New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 959664	39 (0.690)	4 (0.070)	4/246	NT	9.8%	coding (469/540 nt)	PP_5460	membrane protein
	?	NC_002947	= 959675	37 (0.690)					coding (480/540 nt)	PP_5460	membrane protein

TGGCTTCTACCTGTGGCTGGTAGCGATGGTGGTGTTTTGCCTGGGGCAAGCCTGGTTTTGCTGGAAGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/959513‑959664 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagcgaGGGCATTTGCGTCGCTGCATACAACGTTACCCCCAGGGCGGCAATCAAGGCGACATCAAGCCAGTTCCAGCCTGGCACGTCGTCAGCCCTTCGCGCCTTCCAGCAAAACCAGGCTTGCCCCAGGCAAAACACCACCATCGCTACCA  <  NC_002947/959675‑959530                                                                                                                                                                                                                                                                                                            TGGCTTCTACCTGTGGCTGGTAGCGATGGTGGTGTTTTGCCTGGGGCAAGCCTGGTTTTGCTGGAAGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAG                                                                                                                                                       >  6:365759/1‑149   GCTTCTACCTGTGGCTGGTAGCGATGGTGGTGTTTTGCCTGGGGCAAGCCTGGTTTTGCTGGAAGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGC                                                                                                                                                      <  8:26838/148‑1                                                                GAAGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCATACAACGTTACCCCCAGGGCGGCAATCAAGGC                                                                                                 >  4:282577/1‑140                                                                GAAGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCGGCATACAACGTTACCCCCAGGGCGGCAATCAAGGC                                                                                                 <  3:282577/140‑1                                                                                                       GCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGAGGGCATTTGCGTCGCTGC                                                                                                                                  >  1:304207/1‑68                                                                                                       GCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGAGGGCATTTGCGTCGCTGC                                                                                                                                  <  2:304207/68‑1                                                                                                                                                    AGCGAGGGCATTTGCGTCGCTGCATACAACGTTACCCCCAGGGCGGCAATCAAGGCGACATCAAGCCAGTTCCAGCCTGGCACGTCGTCAGCCCTTCGCGCCTTCCAGCAAAACCAGGCTTGCCCCAGGCAAAACACCACCATCGCTAC    <  1:80716/149‑1                                                                                                                                                      CGAGGGCATTTGCGTCGCTGCATACAACGTTACCCCCAGGGCGGCAATCAAGGCGACATCAAGCCAGTTCCAGCCTGGCACGTCGTCAGCCCTTCGCGCCTTCCAGCAAAACCAGGCTTGCCCCAGGCAAAACACCACCATCGCTACCA  <  1:203228/149‑1                                                                                                                                                                                                                                                                                                            TGGCTTCTACCTGTGGCTGGTAGCGATGGTGGTGTTTTGCCTGGGGCAAGCCTGGTTTTGCTGGAAGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/959513‑959664 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagcgaGGGCATTTGCGTCGCTGCATACAACGTTACCCCCAGGGCGGCAATCAAGGCGACATCAAGCCAGTTCCAGCCTGGCACGTCGTCAGCCCTTCGCGCCTTCCAGCAAAACCAGGCTTGCCCCAGGCAAAACACCACCATCGCTACCA  <  NC_002947/959675‑959530

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.