New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 959664	39 (0.690)	4 (0.070)	4/246	NT	9.8%	coding (469/540 nt)	PP_5460	membrane protein
	?	NC_002947	= 959675	37 (0.690)					coding (480/540 nt)	PP_5460	membrane protein

TGGTAGCGATGGTGGTGTTTTGCCTGGGGCAAGCCTGGTTTTGCTGGAAGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCGGAGCAGCCGCAGACGCTTTGATACCCACAAGGAGGGTTAGCATGATCAAGCATTACCTGGCAGGCCTGGCACTGGCCTGCGTGCTACCGGTAGCAATGGCGGACGAT  >  NC_002947/959530‑959821                                                                                                                                                  |                                                                                                                                                   tGGTAGCGATGGTGGTGTTTTGCCTGGGGCAAGCCTGGTTTTGCTGGAAGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCtcg                                                                                                                                                 <  1:203228‑M2/149‑4 (MQ=255)   gTAGCGATGGTGGTGTTTTGCCTGGGGCAAGCCTGGTTTTGCTGGAAGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCtcgct                                                                                                                                               <  1:80716‑M2/149‑6 (MQ=255)       cGATGGTGGTGTTTTGCCTGGGGCAAGCCTGGTTTTGCTGGAAGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTgcgc                                                                                                                                           <  4:322010/149‑1 (MQ=255)         aTGGTGGTGTTTTGCCTGGGGCAAGCCTGGTTTTGCTGGAAGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCtt                                                                                                                                         <  5:167774/149‑1 (MQ=255)                  ttttGCCTGGGGCAAGCCTGGTTTTGCTGGAAGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAgg                                                                                                                                >  7:136021/1‑149 (MQ=255)                       ccTGGGGCAAGCCTGGTTTTGCTGGAAGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAgg                                                                                                                           >  1:259273/1‑149 (MQ=255)                             gCAAGCCTGGTTTTGCTGGAAGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGTGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTCCTGa                                                                                                                     >  4:307432/1‑149 (MQ=255)                             gCAAGCCTGGTTTTGCTGGAAGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCaa                                                                                                                             <  1:92900/141‑1 (MQ=255)                             gCAAGCCTGGTTTTGCTGGAAGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCaa                                                                                                                             >  2:92900/1‑141 (MQ=255)                              cAAGCCTGGTTTTGCTGGAAGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGTGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGAt                                                                                                                    <  3:307432/149‑1 (MQ=255)                              cAAGCCTGGTTTTGCTGGAAGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGAt                                                                                                                    <  6:209001/149‑1 (MQ=255)                              cAAGCCTGGTTTTGCTGGAAGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGAt                                                                                                                    <  2:80716/149‑1 (MQ=255)                                aGCCTGGTTTTGCTGGAAGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGc                                                                                                                  <  3:106018/149‑1 (MQ=255)                                  ccTGGTTTTGCTGGAAGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCt                                                                                                                <  5:365759/149‑1 (MQ=255)                                   cTGGTTTTGCGGGAAGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGGTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTTTATTCAGCGACGCAAATGCCCTCGCTGAGCTTCGAGCCAGGCAAGGTGCTGATGCCTc                                                                                                               <  6:215973/149‑1 (MQ=255)                                      gTTTTGCTGGAAGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCg                                                                                                             <  2:203228/148‑1 (MQ=255)                                      gTTTTGCTGGAAGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCg                                                                                                             <  8:136021/148‑1 (MQ=255)                                               gAAGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCGGAGCAGCCGc                                                                                                   <  4:79150/149‑1 (MQ=255)                                                aaGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCGGAGCAGCCg                                                                                                    >  1:362103/1‑147 (MQ=255)                                                      cgAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCGGAGCAGCCGCAGACGCt                                                                                            >  4:274169/1‑149 (MQ=255)                                                       gAAGGGCTGACGACGTGGCTGGCTGGAACTGGCTTGATGTCGCCTTGTTTGCCGCCGTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCGGAGCAGCCGCAGACGCtt                                                                                           <  3:239268/149‑1 (MQ=255)                                                          gggCTGACGACGTGCCAGTCGGGAACTGGCTTGATGTCGCCTTGCTTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCGCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCGGAGCAGCCGCAGAGGCTTTGa                                                                                        <  6:160209/149‑1 (MQ=255)                                                              tGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCGGAGCAGCCGCAGACGCTTTGATAcc                                                                                    >  1:347243/1‑149 (MQ=255)                                                                acgacgTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCGGAGCAGCCGCAGACGCTTTGATACCca                                                                                  <  2:347243/149‑1 (MQ=255)                                                                                 aaCTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCGGAGCAGCAGCAGACGC‑TTGATACCCACAAGGAGGGTTAGCATGa                                                                >  5:94555/1‑149 (MQ=255)                                                                                      gCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGa                                                                                                                     >  5:200931/1‑92 (MQ=255)                                                                                      gCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGa                                                                                                                     <  6:200931/92‑1 (MQ=255)                                                                                      gCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCGGAGCAGCCGCAGACGCTTTGATACCCACAAGGAGGGTTAGCATGATc                                                              <  2:362103/147‑1 (MQ=255)                                                                                        ttGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCGGAGCAGCCGCAGACGCTTTGATACCCACAAGGAGGGTTAGCATGATCAAg                                                           >  1:172859/1‑148 (MQ=255)                                                                                           aTGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCGGAGCAGCCGCAGACGCTTTGATACCCACAAGGAGGGTTAGCATGATCAAGCAt                                                        <  2:259273/148‑1 (MQ=255)                                                                                            tGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCGGAGCAGCCGCAGACGCTTTGATACCCACAAGGAGGGTTAGCATGATCAAGCATTa                                                      >  4:110683/1‑149 (MQ=255)                                                                                              gcgacTTTATTGCCGGCCCGGCGGTAACCTTGTATGCAGCGACGCAACTTCCCGCGCTGCGCTTCGAGCCAGGCAAGGTTCTGCTGCCTCCGGAGCAGCCGCAGACGCTTTGATACCCACAAGCAGGGTTAGCATGATCACGCATTAc                                                     <  2:95614/144‑1 (MQ=255)                                                                                                gCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCCGCGAGGGCATTTGCGtcgctgcatacaacgttacccccagggcggcaatcaaggcgacatcaagccagttccagcctggcacgtcgtcagcccttcgcgccttc                                                           <  3:282577‑M2/140‑90 (MQ=255)                                                                                                gCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGAGGGCATTTGCGtcgctgcatacaacgttacccccagggcggcaatcaaggcgacatcaagccagttccagcctggcacgtcgtcagcccttcgcgccttc                                                           >  4:282577‑M2/1‑51 (MQ=255)                                                                                                  cTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCGGAGCAGCCGCAGACGCTTTGATACCCACAAGGAGGGTTAGCATGATCAAGCATTACCTgg                                                 >  1:342943/1‑148 (MQ=255)                                                                                                     gATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCGGAGCAGCCGCAGACGCTTTGAAACCCACAAGGAGGGTTAGCATGATCAAGCATTACCTGGCAg                                              <  1:76040/148‑1 (MQ=255)                                                                                                      aTTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCGGAGCAGCCGCAGACGCTTTGATACCCACAAGGAGGGTTAGCATGATCAAGCATTACCTGGCAGGc                                            >  3:137938/1‑149 (MQ=255)                                                                                                          ccgccCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCGGAGCAGCCGCAGACGCTTTGATACCCACAAGGAGGGTTAGCATGATCAAGCATTACCTGGCAGGCCTgg                                        >  3:121837/1‑149 (MQ=255)                                                                                                                                 gCAGCGACGCAAATGCCCtcgctgcatacaacgttacccccagggcggcaatcaaggcgacatcaagc                                                                                                  >  1:304207‑M2/1‑18 (MQ=255)                                                                                                                                 gCAGCGACGCAAATGCCCtcgctgcatacaacgttacccccagggcggcaatcaaggcgacatcaagc                                                                                                  <  2:304207‑M2/68‑51 (MQ=255)                                                                                                                                    gCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCGGAGCAGCCGCAGACGCTTTGATACCCACAAGGAGGGTTAGCATGATCAAGCATTACCTGGCAGGCCTGGCACTGGCCt                               <  1:260383/132‑1 (MQ=255)                                                                                                                                    gCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCGGAGCAGCCGCAGACGCTTTGATACCCACAAGGAGGGTTAGCATGATCAAGCATTACCTGGCAGGCCTGGCACTGGCCt                               >  2:260383/1‑132 (MQ=255)                                                                                                                                        cGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCGGAGCAGCCGCAGACGCTTTGATACCCACAAGGAGGGTTAGCATGATCAAGCATTACCTGGCAGGCCTGGCACTGGCCTGCGTGCTACCGGTAGCAATgg          <  4:121837/149‑1 (MQ=255)                                                                                                                                         gCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCGGAGCAGCCGCAGACGCTTTGATACCCACAAGGAGGGTTAGCATGATCAAGCATTACCTGGCAGGCCTGGCACTGGCCTGCGTGCTACCGGTAGCAATGGc         >  8:13828/1‑149 (MQ=255)                                                                                                                                           aaaTGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCGGAGCAGCCGCAGACGCTTTGATACCCACAAGGAGGGTTAGCATGATCAAGCATTACCTGGCAGGCCTGGCACTGGCCTGCGTGCTACCGGTAGCAATGGCg        >  6:80316/1‑148 (MQ=255)                                                                                                                                                 ccTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCGGAGCAGCCGCAGACGCTTTGATACCCACAAGGAGGGTTAGCATGATCAAGCATTACCTGGCAGGCCTGGTACTGGCCTGCGTGCTACCGGTAGCAAt            >  3:338740/1‑138 (MQ=255)                                                                                                                                                 ccTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCGGAGCAGCCGCAGACGCTTTGATACCCACAAGGAGGGTTAGCATGATCAAGCATTACCTGGCAGGCCTGGTACTGGCCTGCGTGCTACCGGTAGCAAt            <  4:338740/138‑1 (MQ=255)                                                                                                                                                 ccTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCGGAGCAGCCGCAGACGCTTTGATACCCACAAGGAGGGTTAGCATGATCAAGCATTACCTGGCAGGCCTGGCACTGGCCTGCGTGCTACCGGTa                 >  5:305651/1‑133 (MQ=255)                                                                                                                                                 ccTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCGGAGCAGCCGCAGACGCTTTGATACCCACAAGGAGGGTTAGCATGATCAAGCATTACCTGGCAGGCCTGGCACTGGCCTGCGTGCTACCGGTa                 <  6:305651/133‑1 (MQ=255)                                                                                                                                                 ccTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCGGAGCAGCCGCAGACGCTTTGATACCCACAAGGAGGGTTAGCATGATCAAGCATTACCTGGCAGGCCTGGCACTGGCCTGCGTGCTACCGGTAGCAATGGCGGACGAt  >  3:133032/1‑148 (MQ=255)                                                                                                                                                 ccTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCGGAGCAGCCGCAGACGCTTTGATACCCACAAGGAGGGTTAGCATGATCAAGCATTACCTGGCAGGCCTGGCACTGGCCTGCGTGCTACCGGTAGCAATGGCGGACGAt  >  4:170174/1‑148 (MQ=255)                                                                                                                                                  cTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCGGAGCAGCCGCAGACGCTTTGATACCCACAAGGAGGGTTAGCATGATCAAGCAt                                                        >  3:114416/1‑93 (MQ=255)                                                                                                                                                  cTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCGGAGCAGCCGCAGACGCTTTGATACCCACAAGGAGGGTTAGCATGATCAAGCAt                                                        <  4:114416/93‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                   TGGTAGCGATGGTGGTGTTTTGCCTGGGGCAAGCCTGGTTTTGCTGGAAGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCGGAGCAGCCGCAGACGCTTTGATACCCACAAGGAGGGTTAGCATGATCAAGCATTACCTGGCAGGCCTGGCACTGGCCTGCGTGCTACCGGTAGCAATGGCGGACGAT  >  NC_002947/959530‑959821

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.