New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 959664	39 (0.690)	4 (0.070)	4/246	NT	9.8%	coding (469/540 nt)	PP_5460	membrane protein
	?	NC_002947	= 959675	37 (0.690)					coding (480/540 nt)	PP_5460	membrane protein

TTCTACCTGTGGCTGGTAGCGATGGTGGTGTTTTGCCTGGGGCAAGCCTGGTTTTGCTGGAAGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCGGAGCAGCCGCAGACGCTTTGATACCCACAAGGAGGGTTAGCATGATCAAGCATTACCTGGCAGGCCTGGCACTGGCCTGCGTGCTACCGGTAGCAA  >  NC_002947/959517‑959810                                                                                                                                                    |                                                                                                                                                   ttCTACCTGTGGCTGGTAGCGATGGTGGTGTTTTGCCTGGGGCAAGCCTGGTTTTGCTGGAAGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGAc                                                                                                                                                   >  5:209001/1‑149 (MQ=255)      ccTGTGGCTGGTAGCGATGGTGGTGTTTTGCCTGGGGCAAGCCTGGTTTTGCTGGAAGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTTCCGCCCTGGTGGTAACGTTGTATGCAGCGCCGCaaa                                                                                                                                              >  5:160209/1‑149 (MQ=255)         ctgGCTGGTAGCGATGGTGGTGTTTTGCCTGGTGCAAGACTGGTTTTGCTTGAAGGCGCTAAGGGATGACGACGTGCCAGGCTTGAACTGGCTTGATGTCGCCTTGATTGACGCCGTGGTGGTAACGTTGTATGCAGCGAAGCAAAttc                                                                                                                                           >  5:215973/2‑147 (MQ=255)          tgGCTGGTAGCGATGGTGGTGTTTTGCCTGGGGCAAGCCTGGTTTTGCTGGAAGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGc                                                                                                                                           <  1:134880/148‑1 (MQ=255)              tGGTAGCGATGGTGGTGTTTTGCCTGGGGCAAGCCTGGTTTTGCTGGAAGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCtcg                                                                                                                                      <  1:203228‑M2/149‑4 (MQ=255)                gTAGCGATGGTGGTGTTTTGCCTGGGGCAAGCCTGGTTTTGCTGGAAGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCtcgct                                                                                                                                    <  1:80716‑M2/149‑6 (MQ=255)                    cGATGGTGGTGTTTTGCCTGGGGCAAGCCTGGTTTTGCTGGAAGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTgcgc                                                                                                                                <  4:322010/149‑1 (MQ=255)                      aTGGTGGTGTTTTGCCTGGGGCAAGCCTGGTTTTGCTGGAAGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCtt                                                                                                                              <  5:167774/149‑1 (MQ=255)                               ttttGCCTGGGGCAAGCCTGGTTTTGCTGGAAGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAgg                                                                                                                     >  7:136021/1‑149 (MQ=255)                                    ccTGGGGCAAGCCTGGTTTTGCTGGAAGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAgg                                                                                                                >  1:259273/1‑149 (MQ=255)                                         ggCAAGCCTGGTTTTGCTGGAAGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCaaa                                                                                                                                              >  6:363256/1‑114 (MQ=255)                                         ggCAAGCCTGGTTTTGCTGGAAGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCaaa                                                                                                                                              <  5:363256/114‑1 (MQ=255)                                          gCAAGCCTGGTTTTGCTGGAAGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGTGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTCCTGa                                                                                                          >  4:307432/1‑149 (MQ=255)                                          gCAAGCCTGGTTTTGCTGGAAGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCaa                                                                                                                  >  2:92900/1‑141 (MQ=255)                                          gCAAGCCTGGTTTTGCTGGAAGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCaa                                                                                                                  <  1:92900/141‑1 (MQ=255)                                           cAAGCCTGGTTTTGCTGGAAGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGTGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGAt                                                                                                         <  3:307432/149‑1 (MQ=255)                                           cAAGCCTGGTTTTGCTGGAAGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGAt                                                                                                         <  6:209001/149‑1 (MQ=255)                                           cAAGCCTGGTTTTGCTGGAAGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGAt                                                                                                         <  2:80716/149‑1 (MQ=255)                                             aGCCTGGTTTTGCTGGAAGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGc                                                                                                       <  3:106018/149‑1 (MQ=255)                                               ccTGGTTTTGCTGGAAGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCt                                                                                                     <  5:365759/149‑1 (MQ=255)                                                cTGGTTTTGCGGGAAGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGGTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTTTATTCAGCGACGCAAATGCCCTCGCTGAGCTTCGAGCCAGGCAAGGTGCTGATGCCTc                                                                                                    <  6:215973/149‑1 (MQ=255)                                                   gTTTTGCTGGAAGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCg                                                                                                  <  8:136021/148‑1 (MQ=255)                                                   gTTTTGCTGGAAGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCg                                                                                                  <  2:203228/148‑1 (MQ=255)                                                            gAAGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGAcgcaaatgccctcgctgcatacaacgttacccccagggcggcaatcaaggc                                                                                                 >  4:282577‑M1/1‑89 (MQ=255)                                                            gAAGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGAcgcaaatgccctcgcggcatacaacgttacccccagggcggcaatcaaggc                                                                                                 <  3:282577‑M1/140‑52 (MQ=255)                                                            gAAGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCGGAGCAGCCGc                                                                                        <  4:79150/149‑1 (MQ=255)                                                             aaGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCGGAGCAGCCg                                                                                         >  1:362103/1‑147 (MQ=255)                                                                   cgAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCGGAGCAGCCGCAGACGCt                                                                                 >  4:274169/1‑149 (MQ=255)                                                                    gAAGGGCTGACGACGTGGCTGGCTGGAACTGGCTTGATGTCGCCTTGTTTGCCGCCGTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCGGAGCAGCCGCAGACGCtt                                                                                <  3:239268/149‑1 (MQ=255)                                                                       gggCTGACGACGTGCCAGTCGGGAACTGGCTTGATGTCGCCTTGCTTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCGCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCGGAGCAGCCGCAGAGGCTTTGa                                                                             <  6:160209/149‑1 (MQ=255)                                                                           tGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCGGAGCAGCCGCAGACGCTTTGATAcc                                                                         >  1:347243/1‑149 (MQ=255)                                                                             acgacgTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCGGAGCAGCCGCAGACGCTTTGATACCca                                                                       <  2:347243/149‑1 (MQ=255)                                                                                              aaCTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCGGAGCAGCAGCAGACGC‑TTGATACCCACAAGGAGGGTTAGCATGa                                                     >  5:94555/1‑149 (MQ=255)                                                                                                   gCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGAgggcatttgcgtcgctgc                                                                                                                                  <  2:304207‑M1/68‑19 (MQ=255)                                                                                                   gCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGAgggcatttgcgtcgctgc                                                                                                                                  >  1:304207‑M1/1‑50 (MQ=255)                                                                                                   gCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGa                                                                                                          <  6:200931/92‑1 (MQ=255)                                                                                                   gCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGa                                                                                                          >  5:200931/1‑92 (MQ=255)                                                                                                   gCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCGGAGCAGCCGCAGACGCTTTGATACCCACAAGGAGGGTTAGCATGATc                                                   <  2:362103/147‑1 (MQ=255)                                                                                                     ttGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCGGAGCAGCCGCAGACGCTTTGATACCCACAAGGAGGGTTAGCATGATCAAg                                                >  1:172859/1‑148 (MQ=255)                                                                                                        aTGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCGGAGCAGCCGCAGACGCTTTGATACCCACAAGGAGGGTTAGCATGATCAAGCAt                                             <  2:259273/148‑1 (MQ=255)                                                                                                         tGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCGGAGCAGCCGCAGACGCTTTGATACCCACAAGGAGGGTTAGCATGATCAAGCATTa                                           >  4:110683/1‑149 (MQ=255)                                                                                                           gcgacTTTATTGCCGGCCCGGCGGTAACCTTGTATGCAGCGACGCAACTTCCCGCGCTGCGCTTCGAGCCAGGCAAGGTTCTGCTGCCTCCGGAGCAGCCGCAGACGCTTTGATACCCACAAGCAGGGTTAGCATGATCACGCATTAc                                          <  2:95614/144‑1 (MQ=255)                                                                                                             gCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCCGCGAGGGCATTTGCGtcgctgcatacaacgttacccccagggcggcaatcaaggcgacatcaagccagttccagcctggcacgtcgtcagcccttcgcgccttc                                                <  3:282577‑M2/140‑90 (MQ=255)                                                                                                             gCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGAGGGCATTTGCGtcgctgcatacaacgttacccccagggcggcaatcaaggcgacatcaagccagttccagcctggcacgtcgtcagcccttcgcgccttc                                                >  4:282577‑M2/1‑51 (MQ=255)                                                                                                               cTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCGGAGCAGCCGCAGACGCTTTGATACCCACAAGGAGGGTTAGCATGATCAAGCATTACCTgg                                      >  1:342943/1‑148 (MQ=255)                                                                                                                  gATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCGGAGCAGCCGCAGACGCTTTGAAACCCACAAGGAGGGTTAGCATGATCAAGCATTACCTGGCAg                                   <  1:76040/148‑1 (MQ=255)                                                                                                                   aTTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCGGAGCAGCCGCAGACGCTTTGATACCCACAAGGAGGGTTAGCATGATCAAGCATTACCTGGCAGGc                                 >  3:137938/1‑149 (MQ=255)                                                                                                                       ccgccCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCGGAGCAGCCGCAGACGCTTTGATACCCACAAGGAGGGTTAGCATGATCAAGCATTACCTGGCAGGCCTgg                             >  3:121837/1‑149 (MQ=255)                                                                                                                                              gCAGCGACGCAAATGCCCtcgctgcatacaacgttacccccagggcggcaatcaaggcgacatcaagc                                                                                       <  2:304207‑M2/68‑51 (MQ=255)                                                                                                                                              gCAGCGACGCAAATGCCCtcgctgcatacaacgttacccccagggcggcaatcaaggcgacatcaagc                                                                                       >  1:304207‑M2/1‑18 (MQ=255)                                                                                                                                                aGCGAgggcatttgcgtcgctgcatacaacgttacccccagggcggcaatcaaggcgacatcaagccagttccagcctggcacgtcgtcagcccttcgcgccttccagcaaaaccaggcttgccccaggcaaaacaccaccatcgctac    <  1:80716‑M1/149‑145 (MQ=255)                                                                                                                                                 gCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCGGAGCAGCCGCAGACGCTTTGATACCCACAAGGAGGGTTAGCATGATCAAGCATTACCTGGCAGGCCTGGCACTGGCCt                    >  2:260383/1‑132 (MQ=255)                                                                                                                                                 gCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCGGAGCAGCCGCAGACGCTTTGATACCCACAAGGAGGGTTAGCATGATCAAGCATTACCTGGCAGGCCTGGCACTGGCCt                    <  1:260383/132‑1 (MQ=255)                                                                                                                                                  cGAgggcatttgcgtcgctgcatacaacgttacccccagggcggcaatcaaggcgacatcaagccagttccagcctggcacgtcgtcagcccttcgcgccttccagcaaaaccaggcttgccccaggcaaaacaccaccatcgctacca  <  1:203228‑M1/149‑147 (MQ=255)                                                                                                                                                    |                                                                                                                                                   TTCTACCTGTGGCTGGTAGCGATGGTGGTGTTTTGCCTGGGGCAAGCCTGGTTTTGCTGGAAGGCGCGAAGGGCTGACGACGTGCCAGGCTGGAACTGGCTTGATGTCGCCTTGATTGCCGCCCTGGGGGTAACGTTGTATGCAGCGACGCAAATGCCCTCGCTGCGCTTCGAGCCAGGCAAGGTGCTGATGCCTCCGGAGCAGCCGCAGACGCTTTGATACCCACAAGGAGGGTTAGCATGATCAAGCATTACCTGGCAGGCCTGGCACTGGCCTGCGTGCTACCGGTAGCAA  >  NC_002947/959517‑959810

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.