New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 100630445 (0.790)3 (0.060) 3/248 NT 6.3% coding (1234/2430 nt) PP_0867 FecA‑like outer membrane receptor
?NC_002947 = 1006326 46 (0.850)coding (1256/2430 nt) PP_0867 FecA‑like outer membrane receptor

AACCCGTACCAGTCGCTGCGCGATTACGACTACTTCGCGGGCCGGCGCAAGGATGTGTCGTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1006151‑1006304
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgggTACGACGACAACGTCTTCATGTCCCGCGAGGCTATTGTGCTGCCGCGGAAGCTGTCGGTGTAGTAGGTCAGCACTTCGAACTGGGTGGCATCGTCGAGCTGCCGCTGCCATTTGAACGACACATCCTTGCGCCGGCCCGCGAAGTAGT  <  NC_002947/1006326‑1006179
                                                                                                                                                                                                                                                                                                              
AACCCGTACCAGTCGCTGCGCGATTACGACTACTTCGCGGGCCGGCGCAAGGATGTGTCGTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTC                                                                                                                                                           <  1:121472/149‑1
    CGTACCAGTCGCTGCGCGATTACGACTACTTCGCGGGCCGGCGCAAGGATGTGTCGTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGG                                                                                                                                                       <  4:122864/149‑1
           GTCGCTGCGCGATTACGACTACTTCGCGGGCCGGCGCAAGGATGTGTCGTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTACGAAGTGCTGACCTACTAAACCGACAGCATCCGCGGCAGCACAATAGCCTCGCGGGccat                                                                                                                                                  >  8:322201/1‑143
                TGCGCGATTACGACTACTTCGCGGGCCGGCGCAAGGATGTGTCGTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACAGCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGG                                                                                                                                                       >  8:176026/1‑137
                TGCGCGATTACGACTACTTCGCGGGCCGGCGCAAGGATGTGTCGTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGG                                                                                                                                                       <  7:176026/137‑1
                                    GCGGGCCGGCGCAAGGATGTGTCGTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGTACGACGACAACGTCTTCATGTCCCGCGAG                                                                                                                        <  6:309439/148‑1
                                                           GTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGTACGACGACAACGTCTTCATGTCCCGCGAGGCTA                                                                                                                    >  7:56992/1‑129
                                                           GTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGTACGACGACAACGTCTTCATGTCCCGCGAGGCTA                                                                                                                    <  8:56992/129‑1
                                                            TTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCG                                                                                                                                                        <  6:172079/92‑1
                                                                                                                                                         GTACGACGACAACGTCTTCATGTCCCGCGAGGCTATTGTGCTGCCGCGGAAGCTGTCGGTGTAGTAGGTCAGCACTTCGAACTGGGTGGCATCGTCGAGCTGCCGCTGCCATTTGAACGACACATCCTTGCGCCGGCCCGCGAAGTAGT  >  1:224001/1‑149
                                                                                                                                                                                                                                                                                                              
AACCCGTACCAGTCGCTGCGCGATTACGACTACTTCGCGGGCCGGCGCAAGGATGTGTCGTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1006151‑1006304
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgggTACGACGACAACGTCTTCATGTCCCGCGAGGCTATTGTGCTGCCGCGGAAGCTGTCGGTGTAGTAGGTCAGCACTTCGAACTGGGTGGCATCGTCGAGCTGCCGCTGCCATTTGAACGACACATCCTTGCGCCGGCCCGCGAAGTAGT  <  NC_002947/1006326‑1006179

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.