New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1006304	45 (0.790)	3 (0.060)	3/248	NT	6.3%	coding (1234/2430 nt)	PP_0867	FecA‑like outer membrane receptor
	?	NC_002947	= 1006326	46 (0.850)					coding (1256/2430 nt)	PP_0867	FecA‑like outer membrane receptor

GACTACTTCGCGGGCCGGCGCAAGGATGTGTCGTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGCCCAACCACCCAGGAAGTCAGTGTCGGTTACCGTTACCTGAAGGAAGCGATGCGCGAACAGTCGACTCGCCTGGCGCTGATC  >  NC_002947/1006178‑1006468                                                                                                                                                     |                                                                                                                                               gACTACTTCGCGGGCCGGCGCAAGGATGTGTCGTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTa                                                                                                                                                >  7:62087/1‑149 (MQ=255)  actactTCGCGGGCCGGCGCAAGGATGTGTCGTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTAc                                                                                                                                               >  1:224001‑M2/1‑148 (MQ=255)         cgcgGGCCGGCGCAAGGATGTGTCGTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCgcgc                                                                                                                                         <  2:217837/148‑1 (MQ=255)                    gcAAGGATGTGTCGTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACAcc                                                                                                                             >  8:203588/1‑149 (MQ=255)                          aTGTGTCGTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGc                                                                                                                        >  4:144333/1‑148 (MQ=255)                            gtgtCGTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCGCACCTTCGCCAt                                                                                                                     >  1:161199/1‑149 (MQ=255)                              gtCGTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCAtt                                                                                                                    >  8:175695/1‑148 (MQ=255)                                  ttCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGCCATGAAGACGTTGTCGTCGTACACGCGCAACTACCACACCTTCGCCATTGAAcc                                                                                                               >  2:153008/1‑149 (MQ=255)                                      aaTGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCgt                                                                                                           <  8:62087/149‑1 (MQ=255)                                      aaTGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCgt                                                                                                           <  7:203588/149‑1 (MQ=255)                                        tGGCAGCCGCAGCTCGACGAACCCACCCACTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTAGCGGGACATGAAGACGTTCTAGTAGTACCCGCGCAACTACCACACCTACTCCATTGAACCCCgt                                                                                                           >  4:239763/1‑147 (MQ=255)                                           cagcggcagcTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTc                                                                                                      <  7:175695/149‑1 (MQ=255)                                             gcggcagcTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTcgc                                                                                                    <  3:144333/149‑1 (MQ=255)                                                     tCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCAtcttc                                                                                            >  6:15206/1‑149 (MQ=255)                                                     tCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCAtcttc                                                                                            >  3:81913/1‑149 (MQ=255)                                                       gacgaTGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATcttctt                                                                                          >  3:279485/1‑149 (MQ=255)                                                       gacgaTGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATcttctt                                                                                          <  4:279485/149‑1 (MQ=255)                                                                aCCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGcc                                                                                  >  7:193284/1‑148 (MQ=255)                                                                        cGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGCCCAaccacc                                                                          >  4:232732/1‑148 (MQ=255)                                                                         gAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGCCCAACCAccc                                                                         <  3:232732/148‑1 (MQ=255)                                                                               cTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCGCACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGCCCAACCACCCAGGAAGt                                                                  <  2:161199/149‑1 (MQ=255)                                                                                  aCCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGCCCAACCACCCAGGAAGTCAg                                                               >  4:338478/1‑149 (MQ=255)                                                                                   ccTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGCCCAACCACCCAGGAAGTCAgt                                                              <  4:81913/149‑1 (MQ=255)                                                                                       ctacACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGAAGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGCCGATCCACCCAGGAAGTCAGTGTCg                                                          <  8:193284/149‑1 (MQ=255)                                                                                         acacCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGCCCAACCACCCAGGAAGTCAGTGTCGgt                                                        >  4:48584/1‑149 (MQ=255)                                                                                          cacCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGCCCAACCACCCAgg                                                                      <  6:277666/134‑1 (MQ=255)                                                                                          cacCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGCCCAACCACCCAgg                                                                      >  5:277666/1‑134 (MQ=255)                                                                                           acCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTg                                                                                        >  8:135856/1‑115 (MQ=255)                                                                                           acCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTg                                                                                        <  7:135856/115‑1 (MQ=255)                                                                                           acCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGCCCAACCACCCAGGAAGTCAGTGTCGgtta                                                      <  3:48584/149‑1 (MQ=255)                                                                                            ccGCCAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGCCCAACCACCCAGGAAGTCAGTGTCGgttac                                                     <  8:97021/149‑1 (MQ=255)                                                                                             cGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTc                                                                                                                          <  1:287689/79‑1 (MQ=255)                                                                                             cGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTc                                                                                                                          >  2:287689/1‑79 (MQ=255)                                                                                             cGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGCCCAACCACCCAGGAAGTCAGTGTCGgtttcc                                                    >  4:314403/1‑149 (MQ=255)                                                                                              gACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGCCCAACCACCCAGGAAGTCAGTGTCGgttaccg                                                   >  8:74362/1‑149 (MQ=255)                                                                                                 aGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGCCCAACCACCCAGGAAGTCAGTGTCGgttaccgtta                                                <  5:15206/149‑1 (MQ=255)                                                                                                       cgcgGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGCCCAACCACCCAGGAAGTCAGTGTCGGTTACCGTTACCTgaa                                          <  3:239763/149‑1 (MQ=255)                                                                                                         cgGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGCCCAACCACCCAGGAAGTCAGTGTCGgttaccgtt                                                 >  1:238884/1‑140 (MQ=255)                                                                                                         cgGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGCCCAACCACCCAGGAAGTCAGTGTCGgttaccgtt                                                 <  2:238884/140‑1 (MQ=255)                                                                                                         cgGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGCCCAACCACCCAGGAAGTCAGTGTCGGTTACCGTTACCTgaag                                         >  1:351059/1‑148 (MQ=255)                                                                                                             agcaCAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGCCCAACCACCCAGGAAGTCAGTGTc                                                           <  5:207377/126‑1 (MQ=255)                                                                                                             agcaCAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGCCCAACCACCCAGGAAGTCAGTGTc                                                           >  6:207377/1‑126 (MQ=255)                                                                                                              gcaCAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGCCCAACCACCCAGGAAGTCAGTGTCGGTTACCGTTACCTGAAGGAAGCg                                   <  1:353691/149‑1 (MQ=255)                                                                                                                    tAGCCTCGCGGGACATGAAGACGTTGTCGTCGTAcccgcgaggctattgtgctgccgcggaagctgtcggtgtagtaggtcagcacttcgaactgggtggcatcgtcgagctgccgctgccatttgaac                                                 >  7:56992‑M2/1‑34 (MQ=255)                                                                                                                    tAGCCTCGCGGGACATGAAGACGTTGTCGTCGTAcccgcgaggctattgtgctgccgcggaagctgtcggtgtagtaggtcagcacttcgaactgggtggcatcgtcgagctgccgctgccatttgaac                                                 <  8:56992‑M2/129‑96 (MQ=255)                                                                                                                        cTCGCGGGACATGAAGACGTTGTCGTCGTAcccgcgaggctattgtgctgccgcggaagctgtcggtgtagtaggtcagcacttcgaactgggtggcatcgtcgagctgccgctgccatttgaacgacacatccttgcgccggcccgc                          <  6:309439‑M2/148‑119 (MQ=255)                                                                                                                           gcgGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGCCCAACCACCCAGGAAGTCAGTGTCGGTTACCGTTACCTGAAGGAAGCGATGCGCGAACAg                       <  1:2425/148‑1 (MQ=255)                                                                                                                                  aTGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGCCCAACCACCCAGGAAGTCAGTGTCGGTTACCGTTACCTGAAGGAAGCGATGCGCGAACAGTCGACTCg               <  3:338478/149‑1 (MQ=255)                                                                                                                                    gAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGCCCAACCACCCAGGAAGTCAGTGTCGGTTACCGTTACCTGAAGGAAGCGATGCGCGAACAGTCGACTCGcc             >  7:92125/1‑149 (MQ=255)                                                                                                                                    gAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGCCCAACCACCCAGGAAGACAGAGTCGGTTACCGTTACCTGAAGGAAGCGATGAGCGAACAGTCGACTCGcc             >  5:225306/1‑149 (MQ=255)                                                                                                                                              tcgtagTACCCGCGCAACTAGCACACCTTCGAGATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGCCCAACCACCCAGGAAGTCAGTGTCGGTTACCGTTACCTGAAGGAAGCGATGCGCGAACAGTCGACTCGCCTGGCGCTGa    <  6:225306/148‑1 (MQ=255)                                                                                                                                                gtcgtACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGCCCAACCACCCAGGAAGTCAGTGTCGGTTACCGTTACCTGAAGGAAGCGATGCGCGAACAGTCGACTCGCCTGGCGCTGATc  <  7:74362/148‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                               GACTACTTCGCGGGCCGGCGCAAGGATGTGTCGTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGCCCAACCACCCAGGAAGTCAGTGTCGGTTACCGTTACCTGAAGGAAGCGATGCGCGAACAGTCGACTCGCCTGGCGCTGATC  >  NC_002947/1006178‑1006468

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.