New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 1006304 | 45 (0.790) | 3 (0.060) | 3/248 | NT | 6.3% | coding (1234/2430 nt) | PP_0867 | FecA‑like outer membrane receptor |
? | NC_002947 | = 1006326 | 46 (0.850) | coding (1256/2430 nt) | PP_0867 | FecA‑like outer membrane receptor |
GTCGCTGCGCGATTACGACTACTTCGCGGGCCGGCGCAAGGATGTGTCGTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGCCCAACCACCCAGGAAGTCAGTGTCGGTTACCGTTACCTGAAGGAAGCGATGCGCGAACAGTCGAC > NC_002947/1006162‑1006452 | gTCGCTGCGCGATTACGACTACTTCGCGGGCCGGCGCAAGGATGTGTCGTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACAt < 7:322201/147‑1 (MQ=255) gTCGCTGCGCGATTACGACTACTTCGCGGGCCGGCGCAAGGATGTGTCGTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTACGAAGTGCTGACCTACTAAACCGACAGCATCCGCGGCAGCACAATAGCCTCGCGGGccat > 8:322201‑M1/1‑143 (MQ=255) gCTGCGCGATTACGACTACTTCGCGGGCCGGCGCAAGGATGTGTCGTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGa > 2:353691/1‑149 (MQ=255) gACTACTTCGCGGGCCGGCGCAAGGATGTGTCGTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTa > 7:62087/1‑149 (MQ=255) actactTCGCGGGCCGGCGCAAGGATGTGTCGTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTAc > 1:224001‑M2/1‑148 (MQ=255) ttCGCGGGCCGGCGCAAGGATGTGTCGTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGaa < 7:42148/128‑1 (MQ=255) ttCGCGGGCCGGCGCAAGGATGTGTCGTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGaa > 8:42148/1‑128 (MQ=255) cgcgGGCCGGCGCAAGGATGTGTCGTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCgcgc < 2:217837/148‑1 (MQ=255) gcgGGCCGGCGCAAGGATGTGTCGTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGtacgacgacaacgtcttcatgtcccgcgag < 6:309439‑M1/148‑31 (MQ=255) gcAAGGATGTGTCGTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACAcc > 8:203588/1‑149 (MQ=255) aTGTGTCGTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGc > 4:144333/1‑148 (MQ=255) gtgtCGTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCGCACCTTCGCCAt > 1:161199/1‑149 (MQ=255) gtCGTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCAtt > 8:175695/1‑148 (MQ=255) gTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGtacgacgacaacgtcttcatgtcccgcgaggcta < 8:56992‑M1/129‑35 (MQ=255) gTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGtacgacgacaacgtcttcatgtcccgcgaggcta > 7:56992‑M1/1‑95 (MQ=255) ttCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGCCATGAAGACGTTGTCGTCGTACACGCGCAACTACCACACCTTCGCCATTGAAcc > 2:153008/1‑149 (MQ=255) aaTGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCgt < 8:62087/149‑1 (MQ=255) aaTGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCgt < 7:203588/149‑1 (MQ=255) tGGCAGCCGCAGCTCGACGAACCCACCCACTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTAGCGGGACATGAAGACGTTCTAGTAGTACCCGCGCAACTACCACACCTACTCCATTGAACCCCgt > 4:239763/1‑147 (MQ=255) cagcggcagcTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTc < 7:175695/149‑1 (MQ=255) gcggcagcTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTcgc < 3:144333/149‑1 (MQ=255) tCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCAtcttc > 3:81913/1‑149 (MQ=255) tCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCAtcttc > 6:15206/1‑149 (MQ=255) gacgaTGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATcttctt < 4:279485/149‑1 (MQ=255) gacgaTGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATcttctt > 3:279485/1‑149 (MQ=255) aCCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGcc > 7:193284/1‑148 (MQ=255) cGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGCCCAaccacc > 4:232732/1‑148 (MQ=255) gAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGCCCAACCAccc < 3:232732/148‑1 (MQ=255) cTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCGCACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGCCCAACCACCCAGGAAGt < 2:161199/149‑1 (MQ=255) aCCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGCCCAACCACCCAGGAAGTCAg > 4:338478/1‑149 (MQ=255) ccTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGCCCAACCACCCAGGAAGTCAgt < 4:81913/149‑1 (MQ=255) ctacACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGAAGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGCCGATCCACCCAGGAAGTCAGTGTCg < 8:193284/149‑1 (MQ=255) acacCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGCCCAACCACCCAGGAAGTCAGTGTCGgt > 4:48584/1‑149 (MQ=255) cacCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGCCCAACCACCCAgg > 5:277666/1‑134 (MQ=255) cacCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGCCCAACCACCCAgg < 6:277666/134‑1 (MQ=255) acCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTg > 8:135856/1‑115 (MQ=255) acCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTg < 7:135856/115‑1 (MQ=255) acCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGCCCAACCACCCAGGAAGTCAGTGTCGgtta < 3:48584/149‑1 (MQ=255) ccGCCAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGCCCAACCACCCAGGAAGTCAGTGTCGgttac < 8:97021/149‑1 (MQ=255) cGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTc > 2:287689/1‑79 (MQ=255) cGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTc < 1:287689/79‑1 (MQ=255) cGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGCCCAACCACCCAGGAAGTCAGTGTCGgtttcc > 4:314403/1‑149 (MQ=255) gACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGCCCAACCACCCAGGAAGTCAGTGTCGgttaccg > 8:74362/1‑149 (MQ=255) aGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGCCCAACCACCCAGGAAGTCAGTGTCGgttaccgtta < 5:15206/149‑1 (MQ=255) cgcgGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGCCCAACCACCCAGGAAGTCAGTGTCGGTTACCGTTACCTgaa < 3:239763/149‑1 (MQ=255) cgGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGCCCAACCACCCAGGAAGTCAGTGTCGgttaccgtt < 2:238884/140‑1 (MQ=255) cgGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGCCCAACCACCCAGGAAGTCAGTGTCGgttaccgtt > 1:238884/1‑140 (MQ=255) cgGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGCCCAACCACCCAGGAAGTCAGTGTCGGTTACCGTTACCTgaag > 1:351059/1‑148 (MQ=255) agcaCAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGCCCAACCACCCAGGAAGTCAGTGTc > 6:207377/1‑126 (MQ=255) agcaCAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGCCCAACCACCCAGGAAGTCAGTGTc < 5:207377/126‑1 (MQ=255) gcaCAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGCCCAACCACCCAGGAAGTCAGTGTCGGTTACCGTTACCTGAAGGAAGCg < 1:353691/149‑1 (MQ=255) tAGCCTCGCGGGACATGAAGACGTTGTCGTCGTAcccgcgaggctattgtgctgccgcggaagctgtcggtgtagtaggtcagcacttcgaactgggtggcatcgtcgagctgccgctgccatttgaac > 7:56992‑M2/1‑34 (MQ=255) tAGCCTCGCGGGACATGAAGACGTTGTCGTCGTAcccgcgaggctattgtgctgccgcggaagctgtcggtgtagtaggtcagcacttcgaactgggtggcatcgtcgagctgccgctgccatttgaac < 8:56992‑M2/129‑96 (MQ=255) cTCGCGGGACATGAAGACGTTGTCGTCGTAcccgcgaggctattgtgctgccgcggaagctgtcggtgtagtaggtcagcacttcgaactgggtggcatcgtcgagctgccgctgccatttgaacgacacatccttgcgccggcccgc < 6:309439‑M2/148‑119 (MQ=255) gcgGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGCCCAACCACCCAGGAAGTCAGTGTCGGTTACCGTTACCTGAAGGAAGCGATGCGCGAACAg < 1:2425/148‑1 (MQ=255) gtacgacgacaacgtcttcatgtcccgcgaggctattgtgctgccgcggaagctgtcggtgtagtaggtcagcacttcgaactgggtggcatcgtcgagctgccgctgccatttgaacgacacatccttgcgccggcccgcgaagtagt > 1:224001‑M1/1‑1 (MQ=255) | GTCGCTGCGCGATTACGACTACTTCGCGGGCCGGCGCAAGGATGTGTCGTTCAAATGGCAGCGGCAGCTCGACGATGCCACCCAGTTCGAAGTGCTGACCTACTACACCGACAGCTTCCGCGGCAGCACAATAGCCTCGCGGGACATGAAGACGTTGTCGTCGTACCCGCGCAACTACCACACCTTCGCCATTGAACCCCGTGTGTCGCGCATCTTCTTTGCCGGCCCAACCACCCAGGAAGTCAGTGTCGGTTACCGTTACCTGAAGGAAGCGATGCGCGAACAGTCGAC > NC_002947/1006162‑1006452 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |