| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1042220 | 35 (0.620) | 4 (0.070) | 4/246 | NT | 9.0% | coding (30/1311 nt) | colS | integral membrane sensor signal transduction histidine kinase |
| ? | NC_002947 | = 1042247 | 48 (0.900) | coding (57/1311 nt) | colS | integral membrane sensor signal transduction histidine kinase | |||||
CCTGATAGCGACAGCCTGCGCAGCCATGTGCATCAGCTGCGCCAGGTGATCGACAAACCGTTTGAGAAACCGTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1042070‑1042220‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcgcGCTCATCAGGGCAAAGGCGATGATGATGCGCTGGGCAAGGCTTTGCTTAAACTCCATCGCGGCCCTCGGCGAGGCGATAGCCGACGCCATGGACGGTATGCAGCAACGGTTTCTCAAACGGTTTGTCGATCACCTGGCGCAGCTGATG < NC_002947/1042247‑1042100 CCTGATAGCGACAGCCTGCGCAGCCATGTGCATCAGCTGCGCCAGGTGATCGACAAACCGTTTGAGAAACCGTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGC < 5:329057/149‑1CCTGATAGCGACAGCCTGCGCAGCCATGTGCATCAGCTGCGCCAGGTGATCGACAAACCGTTTGAGAAACCGTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGC > 7:30184/1‑149 GATAGCGACAGCCTGCGCAGCCATGTGCATCAGCTGCGCCAGGTGATCGACAAACCGTTTGAGAAACCGTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGC < 5:294205/146‑1 GATAGCGACAGCCTGCGCAGCCATGTGCATCAGCTGCGCCAGGTGATCGACAAACCGTTTGAGAAACCGTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGC > 6:294205/1‑146 ACAGCCTGCGCAGCCATGTGCATCAGCTGCGCCAGGTGATCGACAAACCGTTTGAGAAACCGTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCGCTCAT > 6:282842/1‑147 AGCTGCGCCAGGTGATCGACAAACCGTTTGAGAAACCGTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCGCTCATCAGGGCAAAGGCGATGATGATGCGCT < 6:332266/149‑1 CTGCGCCAGGTGATCGACAAACCGTTTGAGAAACCGTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCGCTCATCAGGGCAAAGGCGATGATGATGCGCTGG < 6:337451/149‑1 GCCAGGTGATCGACAAACCGTTTGAGAAACCGTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCGCTCATCAGGGCAAAGGCGATGATGATGCGCTGGGCAA < 5:282842/149‑1 CGCTCATCAGGGCAAAGGCGATGATGATGCGCTGGGCAAGGCTTTGCTTAAACTCCATCGCGGCCCTCGGCGAGGCGATAGCCGACGCCATGGACGGTATGCAGCAACGGTTTCTCAAACGGTTTGTCGATCACCTGGCGCAGCTGATG < 5:243858/149‑1 CCTGATAGCGACAGCCTGCGCAGCCATGTGCATCAGCTGCGCCAGGTGATCGACAAACCGTTTGAGAAACCGTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1042070‑1042220‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcgcGCTCATCAGGGCAAAGGCGATGATGATGCGCTGGGCAAGGCTTTGCTTAAACTCCATCGCGGCCCTCGGCGAGGCGATAGCCGACGCCATGGACGGTATGCAGCAACGGTTTCTCAAACGGTTTGTCGATCACCTGGCGCAGCTGATG < NC_002947/1042247‑1042100 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |