New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1042220	35 (0.620)	4 (0.070)	4/246	NT	9.0%	coding (30/1311 nt)	colS	integral membrane sensor signal transduction histidine kinase
	?	NC_002947	= 1042247	48 (0.900)					coding (57/1311 nt)	colS	integral membrane sensor signal transduction histidine kinase

ATAGCGACAGCCTGCGCAGCCATGTGCATCAGCTGCGCCAGGTGATCGACAAACCGTTTGAGAAACCGTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCTGGTGGCCGGGGCCTTCGCATTCGGTATCGTCGGCACGGTGCACCTGGTCGAAGAGCGACTGATTTCCTCGGTACTGGGCGGTGACCTGCAGCGCCTGCTGCGTATGGACAGCGTCA  >  NC_002947/1042074‑1042368                                                                                                                                                   |                                                                                                                                                     aTAGCGACAGCCTGCGCAGCCATGTGCATCAGCTGCGCCAGGTGATCGACAAACCGTTTGAGAAACCGTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGca                                                                                                                                                     <  1:203586/148‑1 (MQ=255) aTAGCGACAGCCTGCGCAGCCATGTGCATCAGCTGCGCCAGGTGATCGACAAACCGTTTGAGAAACCGTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGca                                                                                                                                                     <  5:365231/148‑1 (MQ=255)    gCGACAGCCTGCGCAGCCATGTGCATCAGCTGCGCCAGGTGATCGACAAACCGTTTGAGAAACCGTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGcatca                                                                                                                                                  <  5:83906/148‑1 (MQ=255)       aCAGCCTGCGCAGCCATGTGCATCAGCTGCGCCAGGTGATCGACAAACCGTTTGAGAAACCGTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCgctcat                                                                                                                                                >  6:282842‑M1/1‑141 (MQ=255)              gcgcAGCCATGTGCATCAGCTGCGCCAGGTGATCGACAAACCGTTTGAGAAACCGTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCATCATCATCGCCttt                                                                                                                                       >  6:193776/1‑149 (MQ=255)                      aTGTGCATCAGCTGCGCCAGGTGATCGACAAACCGTTTGAGAAACCGTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCtgat                                                                                                                               <  8:30184/149‑1 (MQ=255)                      aTGTGCATCAGCTGCGCCAGGTGATCGACAAACCGTTTGAGAAACCGTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCtgat                                                                                                                               <  5:193776/149‑1 (MQ=255)                           cATCAGCTGCGCCAGGTGATCGACAAACCGTTTGAGAAACCGTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCg                                                                                                                          <  5:243858‑M2/149‑2 (MQ=255)                               aGCTGCGCCAGGTGATCGACAAACCGTTTGAGAAACCGTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCgctcatcagggcaaaggcgatgatgatgcgct                                                                                                                      <  6:332266‑M1/149‑33 (MQ=255)                                 cTGCGCCAGGTGATCGACAAACCGTTTGAGAAACCGTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCgctcatcagggcaaaggcgatgatgatgcgctgg                                                                                                                    <  6:337451‑M1/149‑35 (MQ=255)                                  tGCGCCAGGTGATCGACAAACCGTTTGAGAAACCGTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCtggt                                                                                                                   >  4:150606/1‑149 (MQ=255)                                     gcCAGGTGATCGACAAACCGTTTGAGAAACCGTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCgctcatcagggcaaaggcgatgatgatgcgctgggcaa                                                                                                                <  5:282842‑M1/149‑39 (MQ=255)                                                gACAAACCGTTTGAGAAACCGTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCTGGTGGCCGGGGCCTTCg                                                                                                     >  1:278739/1‑149 (MQ=255)                                                        gTTTGAGAAACCGTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCTGGTGGCCGGGGCCTTCGCAtt                                                                                                 >  6:2681/1‑145 (MQ=255)                                                        gTTTGAGAAACCGTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCTGGTGGCCGGGGCCTTCGCAtt                                                                                                 <  5:2681/145‑1 (MQ=255)                                                            gagaAACCGTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCTGGTGGCCGGGGCCTTCGCATTCGGTAtcg                                                                                         >  2:330857/1‑149 (MQ=255)                                                             agaAACCGTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGcatca                                                                                                                                                  <  7:15349/91‑1 (MQ=255)                                                             agaAACCGTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGcatca                                                                                                                                                  >  8:15349/1‑91 (MQ=255)                                                              gaAACCGTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCTGGTGGCCGGGGCCTTCGCATTCGGTAtcgtc                                                                                       <  3:150606/149‑1 (MQ=255)                                                                         tgcATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCTGGTGGCCGGGGCCTTc                                                                                                      >  3:168884/1‑123 (MQ=255)                                                                         tgcATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCTGGTGGCCGGGGCCTTc                                                                                                      <  4:168884/123‑1 (MQ=255)                                                                             tACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCTGGTGGCCGGGGCCTTCGCATTCGGTATCGTCGGCACGGTGCACCTg                                                                        >  4:78158/1‑149 (MQ=255)                                                                                cGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCTGGTGGCCGGGGGCTTCGCATTCGGTATCGTCGGCACGGTGCACCTGGTc                                                                     >  1:360170/1‑149 (MQ=255)                                                                                  tCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCTGGTGGCCGGGGCCTTCGCATTCGGTATCGTCGGCACGGTGCACCTGGTCg                                                                    >  8:312206/1‑148 (MQ=255)                                                                                       ggCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCTGGTGGCCGGGGCCTTCGCATTCGGTATCGTCGGCACGGTGCACCTGGTCGAAGAGc                                                              >  4:219273/1‑149 (MQ=255)                                                                                             ggCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCTGGTGGCCGGGGCCTTCGCATTCGGTATCGTCGGCACGGTGCACCTGGTCGAAGAGCGACTGa                                                        <  6:243858/149‑1 (MQ=255)                                                                                                    gcctcgccGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCTGGTGGCCGGGGCCTTCGCATTCGGTATCGTCGGCACGGTGCACCTGGTCGAAGAGCGACTGATTTCCTc                                                 <  2:360170/149‑1 (MQ=255)                                                                                                    gcctcgccGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCTGGTGGCCGGGGCCTTCGCATTCGGTATCGTCGGCACGGTGCACCTGGTCGAAGAGCGACTGATTTCATc                                                 >  8:197433/1‑149 (MQ=255)                                                                                                     cctcgccGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCTGGTGGCCGGGGCCTTCGCATTCGGTATCGTCGGCACGGTGCACCTgg                                                                       <  3:34192/126‑1 (MQ=255)                                                                                                     cctcgccGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCTGGTGGCCGGGGCCTTCGCATTCGGTATCGTCGGCACGGTGCACCTgg                                                                       >  4:34192/1‑126 (MQ=255)                                                                                                     cctcgccGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCTGGTGGCCGGGGCCTTCGCATTCGGTATCGTCGGCACGGTGCACCTGGTCGAAGAGCGACTGATTTCCTCg                                                <  3:219273/149‑1 (MQ=255)                                                                                                     cctcgccGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCTGGTGGCCGGGGCCTTCGCATTCGGTATCGTCGGCACGGTGCACCTGGTCGAAGAGCGACTGATTTCCTCg                                                >  4:137506/1‑149 (MQ=255)                                                                                                         gccGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCTGGTGGCCGGGGCCTTCGCATTCGGTATCGTCGGCACGGTGCACCTGGTCGAAGAGCGACTGATTTCCTCGGTa                                             <  2:278739/148‑1 (MQ=255)                                                                                                          ccGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCTGGTGGCCGGGGCCTTCGCATTCGGTATCGTCGGCACGGTGCACCTGGTCGAAGAGCGACTGATTTCCTCGGTACt                                           >  2:4279/1‑149 (MQ=255)                                                                                                               ggCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCTGGTGGCCGGGGCCTTCGCATTCGGTATCGTCGGCACGGTGCACCTGGTCGAAGAGCGACTGATTTCCTCGGTACTGGGCg                                      <  7:312206/149‑1 (MQ=255)                                                                                                                   gcgATGGAGTTTAAGCAAAGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCTGGTGGCCGGGGCCTTCGCATTCGGTATCGTCGGCACGGTGCACCTGGTCGAAGAGCGACTGATTTCCTCGGTACTGGGCGGTGa                                  >  4:44889/1‑149 (MQ=255)                                                                                                                           gTTTAAGCAAAGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCTGGTGGCCGGGGCCTTCGCATTCGGTATCGTCGGCACGGTGCACCTGGTCGAAGAGCGACTGATTTCCTCGGTACTGGGCGGTGACCTGCAgc                          >  2:303648/1‑149 (MQ=255)                                                                                                                                 gCAAAGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCTGGTGGCCGGGGCCTTCGCATTCGGTATCGTCGGCACGGTGCACCTGGTCGAAGAGCGACTGATTTCCTCGGTACTGGGCGGTGACCTGCAGCGCctgc                    >  2:49512/1‑149 (MQ=255)                                                                                                                                 gCAAAGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCTGGTGGCCGGGGCCTTCGCATTCGGTATCGTCGGCACGGTGCACCTGGTCGAAGAGCGACTGATTTCCTCGGTACTGGGCGGTGACCTGCAGCGCctgc                    >  1:282271/1‑149 (MQ=255)                                                                                                                                 gCAAAGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCTGGTGGCCGGGGCCTTCGCATTCGGTATCGTCGGCACGGTGCACCTGGTCGAAGAGCGACTGATTTCCTCGGTACTGGGCGGTGACCTGCAGCGCctgc                    <  1:303648/149‑1 (MQ=255)                                                                                                                                  cAAAGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCTGGTGGCCGGGGCCTTCGCATTCGGTATCGTCGGCACGGTGCACCTGGTCGAAGAGCGACTGATTTCCTCGGTACTGGGCGGTGACCTGCAGCGCctgct                   >  2:89473/1‑149 (MQ=255)                                                                                                                                   aaaGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCTGGTGGCCGGGGCCTTCGCATTCGGTATCGTCGGCACGGTGCACCTGGTCGAAGAGCGACTGATTTCCTCGGTACTGGGCGGTGACCTGCAGCGCctgctg                  >  3:231423/1‑149 (MQ=255)                                                                                                                                   aaaGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCTGGTGGCCGGGGCCTTCGCATTCGGTATCGTCGGCACGGTGCACCTGGTCGAAGAGCGACTGATTTCCTCGGTACTGGGCGGTGACCTGCAGCGCctgctg                  >  6:340401/1‑149 (MQ=255)                                                                                                                                   aaaGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCTGGTGGCCGGGGCCTTCGCATTCGGTATCGTCGGCACGGTGCACCTGGTCGAAGAGCGACTGATTTCCTCGGTACTGGGCGGTGACCTGCAGCGCctgct                   <  7:197433/148‑1 (MQ=255)                                                                                                                                         ttGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCgcgctgggcaaggctttgcttaaactccatcgcggccctcggcgaggcgatagccgacgccatggacggtatgcagcaacggtttctcaaacggtttgtcgatcacctggc            <  5:282842‑M2/149‑112 (MQ=255)                                                                                                                                           gCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCTGGTGGCCGGGGCCTTCGCATTCGGTATCGTCGGCACGGTGCACCTGGTCGAAGAGCGACTGATTTCCTCGGTACTGGGCGGTGACCTGCAGCGCCTGCTGCGTATgg           <  3:78158/148‑1 (MQ=255)                                                                                                                                             ccAGCGCATCATCATCGCCTTTGCCCTGATGAGCgcgctgggcaaggctttgcttaaactccatcgcggccctcggcgaggcgatagccgacgccatggacggtatgcagcaacggtttctcaaacggtttgtcgatcacctggcgcag        <  6:337451‑M2/149‑116 (MQ=255)                                                                                                                                               aGCGCATCATCATCGCCTTTGCCCTGATGAGCgcgctgggcaaggctttgcttaaactccatcgcggccctcggcgaggcgatagccgacgccatggacggtatgcagcaacggtttctcaaacggtttgtcgatcacctggcgcagct      <  6:332266‑M2/149‑118 (MQ=255)                                                                                                                                                   cgctcatcagggcaaaggcgatgatgatgcgctgggcaaggctttgcttaaactccatcgcggccctcggcgaggcgatagccgacgccatggacggtatgcagcaacggtttctcaaacggtttgtcgatcacctggcgcagctgatg  <  5:243858‑M1/149‑149 (MQ=255)                                                                                                                                                   catcatcatCGCCTTTGCCCTGATGAGCGCGCTGGTGGCCGGGGCCTTCGCATTCGGTAGCGTCGGCACGGTGCACCTGGTCGAAGAGCGACTGATTTCCTCGGTACTGGGCGGTGACCTGCAGCGCCTGCTGCGTATGGACAGCGTCa  <  1:330857/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                     ATAGCGACAGCCTGCGCAGCCATGTGCATCAGCTGCGCCAGGTGATCGACAAACCGTTTGAGAAACCGTTGCTGCATACCGTCCATGGCGTCGGCTATCGCCTCGCCGAGGGCCGCGATGGAGTTTAAGCAAAGCCTTGCCCAGCGCATCATCATCGCCTTTGCCCTGATGAGCGCGCTGGTGGCCGGGGCCTTCGCATTCGGTATCGTCGGCACGGTGCACCTGGTCGAAGAGCGACTGATTTCCTCGGTACTGGGCGGTGACCTGCAGCGCCTGCTGCGTATGGACAGCGTCA  >  NC_002947/1042074‑1042368

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.