New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1221777	59 (1.040)	8 (0.150)	7/248	NT	11.9%	coding (1433/1908 nt)	PP_1067	sensor histidine kinase
	?	NC_002947	= 1221820	62 (1.150)					coding (1390/1908 nt)	PP_1067	sensor histidine kinase

TCAGGTTGACCAGAATCTGCTCCAGGCGGGTCTGGTCGATGGCCAGTTGCTGGTCCTCGAACTGGTGGTGCAATTGCAAATGACAGGCACTGATGCGGTTGGCCAGCACCTGCAGGGTGGCCTCTACTGCCTTGGCCAGTGAAGCCTGGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1221625‑1221777 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccgcATCACCGCCAGCCTTCGCTCGTTCGCCCGGCGCGGCGATGACAGCGGCCAGGCTTCACTGGCCAAGGCAGTAGAGGCCACCCTGCAGGTGCTGGCCAACCGCATCAGTGCCTGTCATTTGCAATTGCACCACCAGTTCGAGGACCAGC  <  NC_002947/1221820‑1221673                                                                                                                                                                                                                                                                                                               TCAGGTTGACCAGAATCTGCTCCAGGCGGGTCTGGTCGATGGCCAGTTGCTGGTCCTCGAACTGGTGGTGCAATTGCAAATGACAGGCACTGATGCGGTTGGCCAGCACCTGCAGGGTGGCCTCTACTGCCTTGGCCAGTGAAGCCTGG                                                                                                                                                          <  4:291595/149‑1                                   GTCGATGGCCAGTTGCTGGTCCTCGAACTGGTGGTGCAATTGCAAATGACAGGCACTGATGCGGTTGGCCAGCACCTGCAGGGTGGCCTCTACTGCCTTGGCCAGTGAAGCCTGGCCGCATCACCGCCAGCCTTCGCTCGTTCGCCCGG                                                                                                                        >  2:241767/1‑149                                                     GTCCTCGAACTGGTGGTGCAATTGCAAATGACAGGCACTGATGCGGTTGGCCAGCACCTGCAGGGTGGCCTCTACTGCCTTGGCCAGTGAAGCCTGGCCGCATCACCGCCAGCCTTCGCTCGTTCGCCCGGCGCGGCGATGACAGCGGC                                                                                                      <  1:241767/149‑1                                                      TCCTCGAACTCGTGGTGCAATTGCAAATGACAGGCACTGATGCGGTTGGCCAGCACCTGCAGGGTGGCCTCTACTGCCTTGGCCAGTGAAGCCTGGCCGCATCACCGCCAGCCTTCGCTCGTTCGCCCGGCGCGGCGATGACAGCGGC                                                                                                      >  7:147470/1‑148                                                        cgCGAACTGCTGGTGCAATTGCAAATCACAGGCACTGATGCGGATGGCCAGCACCTGCAGGGTGGCCTCTACTGCCTTGGCCAGTGAAGCCTCGCCGCATCACCGCCAGCCTTCGCTCGATCGCCCGGCGCGGCGATGACAGCGGCCA                                                                                                    <  7:90450/146‑1                                                        CTCGAACTGGTGGTGCAATTGCAAATGACAGGCACTGATGCGGTTGGCCAGCACCTGCAGGGTGGCCTCTACTGCCTTGGCCAGTGAAGCCTGGCCGCATCACCGCCAGCCTTCGCTCGTTCGCCCGGCGCGGCGATGACAGCGGCCAG                                                                                                   <  1:85676/149‑1                                                        CTCGAACTGGTGGTGCAATTGCAAATGACAGGCACTGATGCGGTTGGCCAGCACCTGCAGGGTGGCCTCTACTGCCTTGGCCAGTGAAGCCTGGCCGCATCACCGCCAGCCTTCGCTCGTTCGCCCGGCGCGGCGATGACAGCGGCCA                                                                                                    <  8:147470/148‑1                                                                      GCAATTGCAAATGACAGGCACTGATGCGGTTGGCCAGCTCCTGCAGGGTGGCCTCTACTGCCTTGGCCAGTGAAGCCTGGCCGCATCACCGCCAGCCTTCGCTCGTTCGCCCGGCGCGGCGATGACAGCGGCCAGG                                                                                                  <  3:274079/136‑1                                                                      GCAATTGCAAATGACAGGCACTGATGCGGTTGGCCAGCTCCTGCAGGGTGGCCTCTACTGCCTTGGCCAGTGAAGCCTGGCCGCATCACCGCCAGCCTTCGCTCGTTCGCCCGGCGCGGCGATGACAGCGGCCAGG                                                                                                  >  4:274079/1‑136                                                                                                                                                     GCCGCATCACCGCCAGCCTTCGCTCGTTCGCCCGGCGCGGCGATGACAGCGGCCAGGCTTCACTGGCCAAGGCAGTAGAGGCCACCCTGCAGGTGCTGGCCAACCGCATCAGTGCCTGTCATTTGCAATTGCACCACCAGTTCGAGGAC      >  5:18854/1‑149                                                                                                                                                        GCATCACCGCCAGCCTTCGCTCGTTCGCCCGGCGCGGCGATGACAGCGGCCAGGCTTCACTGGCCAAGGCAGTAGAGGCCACCCTGCAGGTGCTGGCCAACCGCATCAGTGCCTGTCATTTGCAATTGCACCACCAGTTCGAGGCCCAG   >  6:332212/1‑149                                                                                                                                                         CATCACCGCCAGCCTTCGCTCGTTCGCCCGGCGCGGCGATGACAGCGGCCAGGCTTCACTGGCCAAGGCAGTAGAGGCCACCCTGCAGGTGCTGGCCAACCGCATCAGTGCCTGTCATTTGCAATTGCACCACCAGTTCGAGGACCAGC  <  4:114753/149‑1                                                                                                                                                                                                                                                                                                               TCAGGTTGACCAGAATCTGCTCCAGGCGGGTCTGGTCGATGGCCAGTTGCTGGTCCTCGAACTGGTGGTGCAATTGCAAATGACAGGCACTGATGCGGTTGGCCAGCACCTGCAGGGTGGCCTCTACTGCCTTGGCCAGTGAAGCCTGGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1221625‑1221777 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccgcATCACCGCCAGCCTTCGCTCGTTCGCCCGGCGCGGCGATGACAGCGGCCAGGCTTCACTGGCCAAGGCAGTAGAGGCCACCCTGCAGGTGCTGGCCAACCGCATCAGTGCCTGTCATTTGCAATTGCACCACCAGTTCGAGGACCAGC  <  NC_002947/1221820‑1221673

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.