New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1225841 =	48 (0.850)	3 (0.060)	3/248	NT	6.0%	coding (650/921 nt)	gltI	glutamate/aspartate ABC transporter substrate‑binding protein
	?	NC_002947	1225900 =	48 (0.890)					coding (591/921 nt)	gltI	glutamate/aspartate ABC transporter substrate‑binding protein

CCGCGCCGTGGCCTTCATGATGGACGACGCCCTGCTCGCCGGTGAAATGGCCAAGGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1225900‑1225841 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcgGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCGGCGTTCATCGCCTTGAGGATGCGCTCGGAGGTGGTACCGGCGGTGGTCACCACGTTCTTGCCGGCCAGGTCCGG  >  NC_002947/1225900‑1226046                                                                                                                                                                                                                 CCGCGCCGTGGCCTTCATGATGGACGACGCCCTGCTCGCCGGTGAAATGGCCAAGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCGGCGTTCATCGCCTT                                                              >  4:279612/1‑147   GCGCCGTGGCCTTCATGATGGACGACGCCCTGCTCGCCGGTGAAATGGCCAAGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCGGCGTTCATCGCCTTGA                                                            <  7:279967/147‑1   GCGCCGTGGCCTTCATGATGGACGACGCCCTGCTCGCCGGTGAAATGGCCAAGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCGGCGTTCATCGCCTTGA                                                            >  8:279967/1‑147                                                            GGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCGGCGTTCATCGCCTTGAGGATGCGCTCGGAGGTGGTACCGGCGGTGGTCACCACGTTCTTGCCGGCCAGGTCCGG  >  4:14830/1‑148                                                                                                                                                                                                                 CCGCGCCGTGGCCTTCATGATGGACGACGCCCTGCTCGCCGGTGAAATGGCCAAGGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1225900‑1225841 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcgGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCGGCGTTCATCGCCTTGAGGATGCGCTCGGAGGTGGTACCGGCGGTGGTCACCACGTTCTTGCCGGCCAGGTCCGG  >  NC_002947/1225900‑1226046

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.