New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 1225841 =48 (0.850)3 (0.060) 3/248 NT 6.0% coding (650/921 nt) gltI glutamate/aspartate ABC transporter substrate‑binding protein
?NC_002947 1225900 = 48 (0.890)coding (591/921 nt) gltI glutamate/aspartate ABC transporter substrate‑binding protein

TTTGAACGCAGCGTCATCCTTGCGCACCATGCAGCCGTAGATTTCGTACGACTGAGGGGTACCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCAGGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCGGCGTTCATCGCCTTGAGGATGCGCTCGGAGGTGGTACCGGCGGTGGTCACCACGTTCTTGCCGGCCAGGTCCGG  >  NC_002947/1225753‑1226046
                                                                                                                                                    |                                                                                                                                                   
tttGCACGCAGAGTCATCCTTGCGGACCATGCAGCCGTAGATTTAGTACGACTGAGTGGTACCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTGAGCGGCGAGCAGTGCGTCGTCCATCATGAAGGCCACGGCGCgg                                                                                                                                                     <  4:240677/148‑1 (MQ=255)
 aaggcgatgaacgccgacaagcagatgaagatgaacgtgatttccgccaaggaccacggtgaagccttcaacatgctcgaaagcggcCGCGCCTTGGCCATTTCACCGGCGAGCAGGGCGTCGTCCATCATGAAGGCCACGGCGCgg                                                                                                                                                     >  4:279612‑M1/88‑147 (MQ=255)
  tGAACGCAGCGTCATCCTTGCGCAACATGCAGCCGTAGATTTCGTACGACTGAGGGGTACCGGTGATGACCCAGGCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCAGGGCGTCGTCCATCATGAAGGCCACGGCGCGGcc                                                                                                                                                   <  6:337234/148‑1 (MQ=255)
    aaCGCAGCGTCATCCTTGCGCACCATGCAGCCGTAGATTTCGTACGACTGAGGGGTACCGGTGATGACCCAGTCCACTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCAGGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCt                                                                                                                                                >  5:58995/1‑149 (MQ=255)
          gCGTCATCCTTGCGCACCATGCAGCCGTAGATTTCGTACGACTGAGGGGTACCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCACGGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGa                                                                                                                                           <  1:68971/149‑1 (MQ=255)
            gTCATCCTTGCGCACCATGCAGCCGTAGATTTCGTACGACTGAGGGGTACCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCAGGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCa                                                                                                                                        >  6:110398/1‑149 (MQ=255)
                tCCTTGCGCACCATGCAGCCGTAGATTTCGTACGACTGAGGGGTACCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCAGGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGtt                                                                                                                                    <  5:110398/149‑1 (MQ=255)
                     gcgcACCATGCAGCCGTAGATTTCGTACGACTGAGGGGTACCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCAGGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGaa                                                                                                                                 <  3:116387/147‑1 (MQ=255)
                      cgcACCATGCAGCCGTAGATTTCGTACGACTGAGGGGTACCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCAGGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGc                                                                                                                              <  4:295484/149‑1 (MQ=255)
                           cATGCAGCCGTAGATTTCGTACGACTGAGGGGTACCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCAGGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCAc                                                                                                                         >  6:176028/1‑149 (MQ=255)
                                    gTAGATTTCGTACGACTGAGGGGTACCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCAGGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTAGAGCATGTTGAAGGCTTCACCGTGGTCCt                                                                                                               >  6:120757/1‑149 (MQ=255)
                                     tAGATTTCGTACGACTGAGGGGTACCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCAGGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAg                                                                                                                                >  4:221138/1‑132 (MQ=255)
                                     tAGATTTCGTACGACTGAGGGGTACCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCAGGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAg                                                                                                                                <  3:221138/132‑1 (MQ=255)
                                         tttCGTACGACTGAGGGGTACCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCAGGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCg                                                                                                          <  7:231680/149‑1 (MQ=255)
                                            cGTACGACTGAGGGGTACCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCAGGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTc                                                                                                                           >  5:348728/1‑130 (MQ=255)
                                            cGTACGACTGAGGGGTACCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCAGGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTc                                                                                                                           <  6:348728/130‑1 (MQ=255)
                                                cGACTGAGGGGTACCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCAGGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATc                                                                                                    <  2:162821/148‑1 (MQ=255)
                                                        gggTACCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCAGGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGttcatc                                                                                           <  5:132254/149‑1 (MQ=255)
                                                        ggctACCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCAGGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGttcatc                                                                                           <  3:246852/146‑1 (MQ=255)
                                                            aCCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGACCATTTCACCGGCGAGCAGGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGttcatcttca                                                                                       >  8:33895/1‑149 (MQ=255)
                                                              cGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCAGGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGttcatcttcatc                                                                                     >  1:154572/1‑149 (MQ=255)
                                                                gTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCAGGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTg                                                                                   >  6:68574/1‑149 (MQ=255)
                                                                gTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCAGGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTg                                                                                   >  6:15192/1‑149 (MQ=255)
                                                                 tgatgaCCCAGTACGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCAGGGCGTCGTACATCATGAAGGCCACTTCGCGGCCGATTTAGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGc                                                                                  <  5:14915/149‑1 (MQ=255)
                                                                  gatgaCCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCAGGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCg                                                                                                          <  8:286238/124‑1 (MQ=255)
                                                                  gatgaCCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCAGGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCg                                                                                                          >  7:286238/1‑124 (MQ=255)
                                                                        ccAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCAGGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCgg                                                                           >  3:111794/1‑149 (MQ=255)
                                                                          aGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCAGGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCGGCg                                                                         >  3:352871/1‑149 (MQ=255)
                                                                              cGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCAGGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCg                                                                            >  8:216082/1‑142 (MQ=255)
                                                                              cGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCAGGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCg                                                                            <  7:216082/142‑1 (MQ=255)
                                                                                cTGGCTTGCGCGACTTGGACATTTCACCGGCGAGCAGGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCGGCGTTCATc                                                                   <  2:342426/149‑1 (MQ=255)
                                                                                 tGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCAGGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCGGCGTTCATCg                                                                  >  3:20355/1‑149 (MQ=255)
                                                                                    cTTGCGCGCCTTGGCCATTTCACCGGCGAGCAGGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCGGCGTTCATCGCCt                                                               <  2:357889/149‑1 (MQ=255)
                                                                                        ccgcgccgtggccttcatgatggacgacgccctgctcgccggtgaaatggccaaggcgcgGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCGGCGTTCATCGCCtt                                                              >  4:279612‑M2/61‑147 (MQ=255)
                                                                                          gcgccgtggccttcatgatggacgacgccctgctcgccggtgaaatggccaaggcgcgGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCGGCGTTCATCGCCTTGa                                                            >  8:279967‑M2/59‑147 (MQ=255)
                                                                                          gcgccgtggccttcatgatggacgacgccctgctcgccggtgaaatggccaaggcgcgGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCGGCGTTCATCGCCTTGa                                                            <  7:279967‑M2/89‑1 (MQ=255)
                                                                                              ttGGCCATTTCACCGGCGAGCAGGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCGGCGTTc                                                                      <  4:256213/132‑1 (MQ=255)
                                                                                              ttGGCCATTTCACCGGCGAGCAGGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCGGCGTTc                                                                      >  3:256213/1‑132 (MQ=255)
                                                                                                   cATTTCACCGGCGAGCAGGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCGGCGTTCATCGCCTTGAGGATGCGCTCgg                                                <  6:58995/149‑1 (MQ=255)
                                                                                                        cACCGGCGAGCAGGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCGGCGTTCATCGCCTTGAGGATGCGCTCGGAggt                                            <  7:33895/148‑1 (MQ=255)
                                                                                                         aCCGGCGAGCAGGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCGGCGTTCATCGCCTTGAGGATGCGCTCGGAggtg                                           <  4:20355/148‑1 (MQ=255)
                                                                                                         aCCGGCGAGCAGGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCGGCGTTCATCGCCTTGAGGATGCGCTCGGAggtg                                           <  2:154572/148‑1 (MQ=255)
                                                                                                         aCCGGCGAGCAGGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCGGCGTTCATCGCCTTGAGGATGCGCTCGGAggtg                                           <  5:68574/148‑1 (MQ=255)
                                                                                                             gCGAGCAGGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCGGCGTTCATCGCCTTGAGGATGCGCTCGGAGGTGGTAcc                                      >  4:278200/1‑149 (MQ=255)
                                                                                                                     gggCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCGGCGTTCATCGCCTTGAGGATGCGCTCGGAgg                                             <  1:62123/135‑1 (MQ=255)
                                                                                                                     gggCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCGGCGTTCATCGCCTTGAGGATGCGCTCGGAgg                                             >  2:62123/1‑135 (MQ=255)
                                                                                                                     gggCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCGGCGTTCATCGCCTTGAGGATGCGCTCGGAGGTGGTACCGGCggtg                               <  2:8845/149‑1 (MQ=255)
                                                                                                                          tcgtcCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCGGCGTTCATCGCCTTGAGGATGCGCTCGGAGGTGGTACCGGCGGTGGTcac                          >  2:96494/1‑149 (MQ=255)
                                                                                                                            gtcCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGATGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCGGCGTTCATCGCCTTGAGGATGCGCTCGGAGGTGGTACCGGCGGTGGTcac                          >  1:281283/1‑148 (MQ=255)
                                                                                                                                atcatGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCGGCGTTCATCGCCTTGAGGATGCGCTCGGAGGTGGTACCGGCGGTGGTCACCACGt                     >  4:84860/1‑148 (MQ=255)
                                                                                                                                 tcatGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCGGCGTTCATCGCCTTGAGGATGCGCTCGGAGGTGGTACCGGCGGTGGTCACCACGTTc                   <  3:278200/149‑1 (MQ=255)
                                                                                                                                     gAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCGGCGt                                                                        >  6:196663/1‑92 (MQ=255)
                                                                                                                                     gAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCGGCGt                                                                        <  5:196663/92‑1 (MQ=255)
                                                                                                                                        ggCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCGGCGTTCATCGCCTTGAGGATGCGCTCGGAGGTGGTACCGGCGGTGGTCACCACGTTCTTGCCgg            >  2:113540/1‑149 (MQ=255)
                                                                                                                                          ccACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCGGCGTTCATCGCCTTGAGGATGCGCTCGGAGGTGGTACCGGCGGTGGTCACCACGTTCTTGCCGGcc          <  4:352871/149‑1 (MQ=255)
                                                                                                                                           cACGCCGCGGCCGCTTACGAGCATGTAGAAGGCATCACCGTGGTCGTTGGCCGAAATCACGTAGATCTTCATCTGCTTGTCGGCGTTCTTCGCCTTGAGGAAGCCCTCCGAGGTGGTACCGGCGGTGGTCACCACGTTCTTGCCGGCCa         >  8:313474/1‑149 (MQ=255)
                                                                                                                                                   gGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCGGCGTTCATCGCCTTGAGGATGCGCTCGGAGGTGGTACCGGCGGTGGTCACCACGTTCTTGCCGGCCAGGTCCgg  >  4:14830‑M2/2‑148 (MQ=255)
                                                                                                                                                    |                                                                                                                                                   
TTTGAACGCAGCGTCATCCTTGCGCACCATGCAGCCGTAGATTTCGTACGACTGAGGGGTACCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCAGGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCGGCGTTCATCGCCTTGAGGATGCGCTCGGAGGTGGTACCGGCGGTGGTCACCACGTTCTTGCCGGCCAGGTCCGG  >  NC_002947/1225753‑1226046

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.