New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1225841 =	48 (0.850)	3 (0.060)	3/248	NT	6.0%	coding (650/921 nt)	gltI	glutamate/aspartate ABC transporter substrate‑binding protein
	?	NC_002947	1225900 =	48 (0.890)					coding (591/921 nt)	gltI	glutamate/aspartate ABC transporter substrate‑binding protein

TAGCTCTTGTTGACTTCGCCCGACTTGAAGTAGGCAACGATGGCGTCGTCGACCGCTTTTTTGAACGCAGCGTCATCCTTGCGCACCATGCAGCCGTAGATTTCGTACGACTGAGGGGTACCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCA‑GGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCGGCGTTCATCGCCT  >  NC_002947/1225694‑1225985                                                                                                                                                    |                                                                                                                                                  ccggacctggccggcaagaacgtggtgaccaccgccggtaccacctccgagcgcatcctcaaggcgatgaacgccgacaagcagatgaagatgaacgtgatttccgccaaggaccacggtgaagccttcaacatgctcgaaagcggcc                                                                                                                                                   >  4:14830‑M1/148‑148 (MQ=255)          ttgACTTCGCCCGACTTGAAGTAGGCAACGATGGCGTCGTCGACCGCTTTTTTGAACGCAGCGTCATCCTTGCGCACCATGCAGCCGTAGATTTCGTACGACTGAGGGGTACCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGc                                                                                                                                         <  4:21156/149‑1 (MQ=255)              cTTCGCCCGACTTGAAGTAGGCAACGATGGCGTCGTCGACCGCTTTTTTGAACGCAGCGTCATCCTTGCGCACCATGCAGCCGTAGATTTCGTACGACTGAGGGGTACCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCAtt                                                                                                                                     >  8:236118/1‑149 (MQ=255)               ttCGCCCGACTTGAAGTAGGCAACGATGGCGTCGTCGACCGCTTTTTTGAACGCAGCGTCATCCTTGCGCACCATGCAGCCGTAGATTTCGTACGACTGAGGGGTACCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCAtt                                                                                                                                     >  1:162821/1‑148 (MQ=255)               ttCGCCCGACTTGAAGTAGGCAACGATGGCGTCGTCGACCGCTTTTTTGAACGCAGCGTCATCCTTGCGCACCATGCAGCCGTAGATTTCGTACGACTGAGGGGTACCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCAtt                                                                                                                                     >  6:117335/1‑148 (MQ=255)                 cGCCCGACTTGAAGTAGGCAACGATGGCGTCGTCGACCGCTTTTTTGAACGCAGCGTCATCCTTGCGCACCATGCAGCCGTAGATTTCGTACGACTGAGGGGTACCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCAttt                                                                                                                                    <  5:117335/147‑1 (MQ=255)                    ccGACTTGAAGTAGGCAACGATAGCGTCGTCGACCGCTTTTTTGAACGCAGCGTCATCCTTGCGCACCATGCAGCCGTAGATTTCGTACGACTGAGGGGTACCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCg                                                                                                                               >  7:54043/1‑149 (MQ=255)                       aCTTGAAGTAGGCAACGATGGCGTCGTCGACCGCTTTTTTGAACGCAGCGTCATCCTTGCGCACCATGCAGCCGTAGATTTCGTACGACTGAGGGGTACCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGc                                                                                                                             >  1:357889/1‑148 (MQ=255)                            aaGTAGGCAACGATGGCGTCGTCGACCGCTTTTTTGAACGCAGCGTCATCCTTGCGCACCATGCAGCCGTAGATTTCGTACGACTGAGGGGTACCGGTGATTACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCA‑g                                                                                                                      >  6:132254/1‑149 (MQ=255)                             aGTAGGCAACGATGGCGTCGTCGACCGCTTTTTTGAACGCAGCGTCATCCTTGCGCACCATGCAGCCGTAGATTTCGTACGACTGAGGGGTACCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCA‑gg                                                                                                                     <  3:273198/149‑1 (MQ=255)                                    aaCGATGGCGTCGTCGACCGCTTTTTTGAACGCAGCGTCATCCTTGCGCACCATGCAGCCGTAGATTTCGTACGACTGAGGGGTACCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCA‑GGGcgtcgt                                                                                                              >  8:231680/1‑149 (MQ=255)                                           gCGTCGTCGACCGCTTTTTTGAACGCAGCGTCATCCTTGCGCACCATGCAGCCGTAGATTTCGTACGACAGAGGGGTACCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCA‑GGGCGTCGTCcatca                                                                                                        <  7:236118/148‑1 (MQ=255)                                               cgtcgACCGCTTTTTTGAACGCAGCGTCATCCTTGCGCACCATGCAGCCGTAGATTTCGTACGACTGAGGGGTACCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGc                                                                                                                         >  1:222417/1‑128 (MQ=255)                                               cgtcgACCGCTTTTTTGAACGCAGCGTCATCCTTGCGCACCATGCAGCCGTAGATTTCGTACGACTGAGGGGTACCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGc                                                                                                                         <  2:222417/128‑1 (MQ=255)                                                      cGCTTTTTTGAACGCAGCGTCATCCTTGCGCACCATGCAGCCGTAGATTTCGTACGACTGAGGGGTACCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCA‑GGGCGTCGTCCATCATGAAGGCCACgg                                                                                            >  2:68971/1‑149 (MQ=255)                                                      cGCTTTTTTGAACGCAGCGTCATCCTTGCGCACCATGCAGCCGTAGATTTCGTACGACTGAGGGGTACCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCA‑GGGCGTCGTCCATCATGAAGGCCACgg                                                                                            >  3:295484/1‑149 (MQ=255)                                                           tcaaggcgatgaacgccgacaagcagatgaagatgaacgtgatttccgccaaggaccacggtgaagccttcaacatgctcgaaagcggcCGCGCCTTGGCCATTTCACCGGCGAGCA‑GGGCGTCGTCCATCATGAAGGCCACGgcgc                                                                                         >  8:279967‑M1/90‑147 (MQ=255)                                                           tcaaggcgatgaacgccgacaagcagatgaagatgaacgtgatttccgccaaggaccacggtgaagccttcaacatgctcgaaagcggcCGCGCCTTGGCCATTTCACCGGCGAGCA‑GGGCGTCGTCCATCATGAAGGCCACGgcgc                                                                                         <  7:279967‑M1/58‑1 (MQ=255)                                                            tttGCACGCAGAGTCATCCTTGCGGACCATGCAGCCGTAGATTTAGTACGACTGAGTGGTACCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTGAGCGGCGAGCA‑GTGCGTCGTCCATCATGAAGGCCACGGCGCgg                                                                                       <  4:240677/148‑1 (MQ=255)                                                             aaggcgatgaacgccgacaagcagatgaagatgaacgtgatttccgccaaggaccacggtgaagccttcaacatgctcgaaagcggcCGCGCCTTGGCCATTTCACCGGCGAGCA‑GGGCGTCGTCCATCATGAAGGCCACGGCGCgg                                                                                       >  4:279612‑M1/88‑147 (MQ=255)                                                              tGAACGCAGCGTCATCCTTGCGCAACATGCAGCCGTAGATTTCGTACGACTGAGGGGTACCGGTGATGACCCAGGCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCA‑GGGCGTCGTCCATCATGAAGGCCACGGCGCGGcc                                                                                     <  6:337234/148‑1 (MQ=255)                                                                aaCGCAGCGTCATCCTTGCGCACCATGCAGCCGTAGATTTCGTACGACTGAGGGGTACCGGTGATGACCCAGTCCACTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCA‑GGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCt                                                                                  >  5:58995/1‑149 (MQ=255)                                                                    cAGCGTCATCCTTGCGCACCATGCAGCCGTAGATTTCGTACGACTGAGGGGTACCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCA‑GGGCgtcgtc                                                                                                             <  2:184279/118‑1 (MQ=255)                                                                    cAGCGTCATCCTTGCGCACCATGCAGCCGTAGATTTCGTACGACTGAGGGGTACCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCA‑GGGCgtcgtc                                                                                                             >  1:184279/1‑118 (MQ=255)                                                                      gCGTCATCCTTGCGCACCATGCAGCCGTAGATTTCGTACGACTGAGGGGTACCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCACGGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGa                                                                             <  1:68971/149‑1 (MQ=255)                                                                        gTCATCCTTGCGCACCATGCAGCCGTAGATTTCGTACGACTGAGGGGTACCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCA‑GGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCa                                                                          >  6:110398/1‑149 (MQ=255)                                                                            tCCTTGCGCACCATGCAGCCGTAGATTTCGTACGACTGAGGGGTACCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCA‑GGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGtt                                                                      <  5:110398/149‑1 (MQ=255)                                                                                 gcgcACCATGCAGCCGTAGATTTCGTACGACTGAGGGGTACCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCA‑GGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGaa                                                                   <  3:116387/147‑1 (MQ=255)                                                                                  cgcACCATGCAGCCGTAGATTTCGTACGACTGAGGGGTACCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCA‑GGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGc                                                                <  4:295484/149‑1 (MQ=255)                                                                                       cATGCAGCCGTAGATTTCGTACGACTGAGGGGTACCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCA‑GGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCAc                                                           >  6:176028/1‑149 (MQ=255)                                                                                                gTAGATTTCGTACGACTGAGGGGTACCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCA‑GGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTAGAGCATGTTGAAGGCTTCACCGTGGTCCt                                                  >  6:120757/1‑149 (MQ=255)                                                                                                 tAGATTTCGTACGACTGAGGGGTACCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCA‑GGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAg                                                                  >  4:221138/1‑132 (MQ=255)                                                                                                 tAGATTTCGTACGACTGAGGGGTACCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCA‑GGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAg                                                                  <  3:221138/132‑1 (MQ=255)                                                                                                     tttCGTACGACTGAGGGGTACCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCA‑GGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCg                                             <  7:231680/149‑1 (MQ=255)                                                                                                        cGTACGACTGAGGGGTACCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCA‑GGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTc                                                             >  5:348728/1‑130 (MQ=255)                                                                                                        cGTACGACTGAGGGGTACCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCA‑GGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTc                                                             <  6:348728/130‑1 (MQ=255)                                                                                                            cGACTGAGGGGTACCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCA‑GGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATc                                       <  2:162821/148‑1 (MQ=255)                                                                                                                    gggTACCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCA‑GGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGttcatc                              <  5:132254/149‑1 (MQ=255)                                                                                                                    ggctACCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCA‑GGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGttcatc                              <  3:246852/146‑1 (MQ=255)                                                                                                                        aCCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGACCATTTCACCGGCGAGCA‑GGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGttcatcttca                          >  8:33895/1‑149 (MQ=255)                                                                                                                          cGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCA‑GGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGttcatcttcatc                        >  1:154572/1‑149 (MQ=255)                                                                                                                            gTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCA‑GGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTg                      >  6:68574/1‑149 (MQ=255)                                                                                                                            gTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCA‑GGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTg                      >  6:15192/1‑149 (MQ=255)                                                                                                                             tgatgaCCCAGTACGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCA‑GGGCGTCGTACATCATGAAGGCCACTTCGCGGCCGATTTAGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGc                     <  5:14915/149‑1 (MQ=255)                                                                                                                              gatgaCCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCA‑GGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCg                                             >  7:286238/1‑124 (MQ=255)                                                                                                                              gatgaCCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCA‑GGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCg                                             <  8:286238/124‑1 (MQ=255)                                                                                                                                    ccAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCA‑GGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCgg              >  3:111794/1‑149 (MQ=255)                                                                                                                                      aGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCA‑GGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCGGCg            >  3:352871/1‑149 (MQ=255)                                                                                                                                          cGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCA‑GGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCg               <  7:216082/142‑1 (MQ=255)                                                                                                                                          cGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCA‑GGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCg               >  8:216082/1‑142 (MQ=255)                                                                                                                                            cTGGCTTGCGCGACTTGGACATTTCACCGGCGAGCA‑GGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCGGCGTTCATc      <  2:342426/149‑1 (MQ=255)                                                                                                                                             tGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCA‑GGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCGGCGTTCATCg     >  3:20355/1‑149 (MQ=255)                                                                                                                                                cTTGCGCGCCTTGGCCATTTCACCGGCGAGCA‑GGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCGGCGTTCATCGCCt  <  2:357889/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                  TAGCTCTTGTTGACTTCGCCCGACTTGAAGTAGGCAACGATGGCGTCGTCGACCGCTTTTTTGAACGCAGCGTCATCCTTGCGCACCATGCAGCCGTAGATTTCGTACGACTGAGGGGTACCGGTGATGACCCAGTCCGCTGGCTTGCGCGCCTTGGCCATTTCACCGGCGAGCA‑GGGCGTCGTCCATCATGAAGGCCACGGCGCGGCCGCTTTCGAGCATGTTGAAGGCTTCACCGTGGTCCTTGGCGGAAATCACGTTCATCTTCATCTGCTTGTCGGCGTTCATCGCCT  >  NC_002947/1225694‑1225985

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.