New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1407450 =	49 (0.860)	6 (0.110)	5/248	NT	11.6%	intergenic (‑350/‑98)	puuP/PP_1230	putrescine permease/hypothetical protein
	?	NC_002947	1407469 =	45 (0.830)					intergenic (‑369/‑79)	puuP/PP_1230	putrescine permease/hypothetical protein

ATGGCGATAGCCAGGCCGGAAAGGATGCCAACTGATTTCTTCATGAATAGAACCGATTGCTGTCCGTAAGGGCTTCGAAGGCGGCCAGAGGCCACGCAGAAATTGAAGAGTACCACCCCCGATTGGGCCGAGTGCT‑GGCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1407591‑1407450 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcccaATCGGGGGTGGTACTCTTCAATTTCTGCGTGGC  >  NC_002947/1407469‑1407501                                                                                                                                                                                  ATGGCGATAGCCAGGCCGGAAAGGATGCCAACTGATTTCTTCATGAATAGAACCGATTGCTGTCCGTAAGGGCTTCGAAGGCGGCCAGAGGCCACGCAGAAATTGAAGAGTACCACCCCCGATTGGGCC‑AGCACTCGGCCCAATCGGGG                            <  8:307760/149‑1  TGGCGATAGCCAGGCCGGAAAGGATGCCAACTGATTTCTTCATGAATAGAACCGATTGCTGTCCGTAAGGGCTTCGAAGGCGGCCAGAGGCCACGCAGAAATTGAAGAGTACCACCCCCGATTGGGCC‑AGCACTCGGCCCAATCGGGGG                           <  1:217794/149‑1                                                              GTCCGTAAGGGCTTCGAAGGCGGCCAGAGGCCACGCAGAAATTGAAGAGTACCACCCCCGATTGGGCC‑AGCACTCGGCCCAATCGGGGG                           <  1:104011/89‑1                                                              GTCCGTAAGGGCTTCGAAGGCGGCCAGAGGCCACGCAGAAATTGAAGAGTACCACCCCCGATTGGGCC‑AGCACTCGGCCCAATCGGGGG                           >  2:104011/1‑89                                                                                                                         GATTGGGCCGAGTGCT‑GGCCCAATCGGGGGTGGTACTCTTCAATTTCTGCGTGGC  <  5:148421/55‑1                                                                                                                         GATTGGGCCGAGTGCT‑GGCCCAATCGGGGGTGGTACTCTTCAATTTCTGCGTGGC  >  6:148421/1‑55                                                                                                                                                                                  ATGGCGATAGCCAGGCCGGAAAGGATGCCAACTGATTTCTTCATGAATAGAACCGATTGCTGTCCGTAAGGGCTTCGAAGGCGGCCAGAGGCCACGCAGAAATTGAAGAGTACCACCCCCGATTGGGCCGAGTGCT‑GGCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1407591‑1407450 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcccaATCGGGGGTGGTACTCTTCAATTTCTGCGTGGC  >  NC_002947/1407469‑1407501

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.