| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1407450 = | 49 (0.860) | 6 (0.110) | 5/248 | NT | 11.6% | intergenic (‑350/‑98) | puuP/PP_1230 | putrescine permease/hypothetical protein |
| ? | NC_002947 | 1407469 = | 45 (0.830) | intergenic (‑369/‑79) | puuP/PP_1230 | putrescine permease/hypothetical protein | |||||
TTTGTTCGGTTTTTGCGCGTTTTTTTGCGATTATGATCAATTTGTGTGTTCGTAAAAATTAACGATCCCTTTGCTTGCCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGCAATCGGTTCTATTCATGAAGAAATCAGTTGGCATCCTTTCCGGCCTGGCTATCGCCATTGCCGTCGCAACTACCGCAGGCGCCT > NC_002947/1407327‑1407617 | tttGTTCGGTTTTTGCGCGTTTTTTTGCGATTATGATCAATTTGTGTGTTCGTAAAAATTAACGATCCCTTTGCTTGCCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCgggg < 4:151445/149‑1 (MQ=255) atggcgatagccaggccggaaaggatgccaactgatttcttcatgaatagaaccgattgctgtccgtaagggcttcgaaggcggccagaggccacgcagaaattgaagagtaccacccccgattgggccagcactcggcccaATCgggg < 8:307760‑M2/7‑1 (MQ=255) tggcgatagccaggccggaaaggatgccaactgatttcttcatgaatagaaccgattgctgtccgtaagggcttcgaaggcggccagaggccacgcagaaattgaagagtaccacccccgattgggccagcactcggcccaATCggggg < 1:217794‑M2/8‑1 (MQ=255) tGTTCGGTTTTTGCGCGTTTTTTTGCGATTATGATCAATTTGTGTGTTCGTAAAAATTAACGATCCCTTTGCTTGCCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCggggg < 5:91564/148‑1 (MQ=255) ggTTTTTGCGCGTTTTTTTGCTATTATGATCAATTTGTGTGTTCGTAAAAATTAACGATCCCTTTGCTTGCCGCAGCGTTATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTa < 1:111357/148‑1 (MQ=255) ggTTTTTGCGCGTTTTTTTGCGATTATGATCAATTTGTGTGTTCGTAAAAATTAACGATCCCTTTGCTTGCCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTa < 4:325391/148‑1 (MQ=255) gTTTTTGCGCGTTTTTTTGCGATTATGATCAATTTGTGTGTTCGTAAAAATTAACGATCCCTTTGCTTGCCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGggtg < 6:315284/144‑1 (MQ=255) gTTTTTGCGCGTTTTTTTGCGATTATGATCAATTTGTGTGTTCGTAAAAATTAACGATCCCTTTGCTTGCCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTAct < 3:40782/149‑1 (MQ=255) gTTTTTGCGCGTTTTTTTGCGATTATGATCAATTTGTGTGTTCGTAAAAATTAACGATCCCTTTGCTTGCCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTACTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGggtg > 5:315284/1‑144 (MQ=255) tttGCGCGTTTTTTTGCGATTATGATCAATTTGTGTGTTCGTAAAAATTAACGATCCCTTTGCTTGCCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTActct < 2:364102/148‑1 (MQ=255) gcgTTTTTTTGCGATTATGATCAATTTGTGTGTTCGTAAAAATTAACGATCCCTTTGCTTGCCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCgggg < 6:47578/133‑1 (MQ=255) gcgTTTTTTTGCGATTATGATCAATTTGTGTGTTCGTAAAAATTAACGATCCCTTTGCTTGCCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCgggg > 5:47578/1‑133 (MQ=255) gcgTTTTTTTGCGATTATGATCAATTTGTGTGTTCGTAAAAATTAACGATCCCTTTGCTTGCCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAAtt > 2:266207/1‑149 (MQ=255) gATTATGATCAATTTGTGTGTTCGTAAAAATTAACGATCCCTTTGCTTGCCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGcc > 4:184435/1‑148 (MQ=255) aTGATCAATTTGTGTGTTCGTAAAAATTAACGATCCCTTTGCTTGCCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTg < 7:262454/148‑1 (MQ=255) tGATCAATTTGTGTGTTCGTAAAAATTAACGATCCCTTTGCTTGCCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGgc > 1:327704/1‑149 (MQ=255) gATCAATTTGTGTGTTCGTAAAAATTAACGATCCCTTTGCTTGCCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGgcc > 5:107293/1‑149 (MQ=255) tttGTGTGTTCGTAAAAATTAACGATCCCTTTGCTTGCCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTc < 4:103570/149‑1 (MQ=255) tAAAAATTAACGATCCCTTTGCTTGCGGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACg > 4:78875/1‑149 (MQ=255) tAAAAATTAACGATCCCTTTGCTTGCCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACg > 2:289060/1‑149 (MQ=255) aaaaTTAACGATCCCTTTGCTTGCCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGa > 8:133461/1‑149 (MQ=255) gtccgtaagggcttcgaaggcggccagaggccacgcagaaattgaagagtaccacccccgattgggccagcactcggcccaATCggggg < 1:104011‑M2/8‑1 (MQ=255) gtccgtaagggcttcgaaggcggccagaggccacgcagaaattgaagagtaccacccccgattgggccagcactcggcccaATCggggg > 2:104011‑M2/82‑89 (MQ=255) gATCCCTTTGCTTGCCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGCAATCg > 3:176388/1‑149 (MQ=255) cTTTGCTTGCCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTGCTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGCAATCGGTTc > 6:66285/1‑148 (MQ=255) cTTTGCTTGCCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGCAATCGGTTc > 3:190200/1‑148 (MQ=255) cttgcCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTCGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGCAATCGGTTCTATTc < 8:84747/148‑1 (MQ=255) gcCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGCAATCGGTTCTATTCAt < 4:176388/147‑1 (MQ=255) cGTGATGTCGGATGTGTCAGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGcc < 1:88229/112‑1 (MQ=255) cGTGATGTCGGATGTGTCAGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGcc > 2:88229/1‑112 (MQ=255) gTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGCAATCGGTTCTATTCATGAAGAAATCa < 3:184435/149‑1 (MQ=255) tGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCTCTCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGCAATCGGTTCTATTCATGAAGAAATCa < 1:289060/149‑1 (MQ=255) gTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGCAATCGGTTCTATTCATGAAGAAATCAGTTgg > 1:27855/1‑149 (MQ=255) gccacgcagaaattgaagagtaccacccccgatTGGGCC‑AGCACTCGGCCCAATc > 6:148421‑M1/34‑55 (MQ=255) gccacgcagaaattgaagagtaccacccccgatTGGGCC‑AGCACTCGGCCCAATc < 5:148421‑M1/22‑1 (MQ=255) tCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGCAATCGGTTCTa > 8:219771/1‑119 (MQ=255) tCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGCAATCGGTTCTa < 7:219771/119‑1 (MQ=255) tCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGCAATCGGTTCTATTCATGAAGAAATCa < 3:168164/134‑1 (MQ=255) tCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGCAATCGGTTCTATTCATGAAGAAATCa > 4:168164/1‑134 (MQ=255) tCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGCAATCGGTTCTATTCATGAAGAAATCAGTTGGCATCCTTTcc < 3:36933/149‑1 (MQ=255) tCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGCAATCGGTTCTATTCATGAAGAAATCAGTTGGCATCCTTTcc < 2:327704/149‑1 (MQ=255) tCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGCAATCGGTTCTATTCATGAAGAAATCAGTTGGCATCCTTTcc > 3:245263/1‑149 (MQ=255) cGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑Gc > 3:299860/1‑69 (MQ=255) cGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑Gc < 4:299860/69‑1 (MQ=255) aaTGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGTAATCGGTTCTATTCATGAAGAAATCAGTTGGCATCCTTTCCGGCCTgg < 1:266207/149‑1 (MQ=255) cATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGTCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGCAATCGGTTCTATTCATGAAGAAATCAGTTGGCATCCTTTCCGGCCTGGCTATc < 7:89000/149‑1 (MQ=255) aTTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGCAATCGGTTCTATTCATGAAGAAATCAGTTGGCATCCTTTCCGGCCTGGCTATCg > 4:214587/1‑149 (MQ=255) tctcGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGCAATCGGTTCTATTCATGAAGAAATCAGTTGGCATCCTTTCCGGCCTGGCTATCGCCa > 7:278439/1‑149 (MQ=255) cccccgatTGGGCCGAGTGCT‑GGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGAc < 1:104011‑M1/81‑1 (MQ=255) cccccgatTGGGCCGAGTGCT‑GGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGAc > 2:104011‑M1/9‑89 (MQ=255) cccccgatTGGGCCGAGTGCT‑GGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGCAATCGGTTCTATTCATGAAGAAATCAGTTGGCATCCTTTCCGGCCTGGCTATCGCCa < 1:217794‑M1/141‑1 (MQ=255) ccccgatTGGGCCGAGTGCT‑GGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGCAATCGGTTCTATTCATGAAGAAATCAGTTGGCATCCTTTCCGGCCTGGCTATCGCCAt < 8:307760‑M1/142‑1 (MQ=255) gACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGCAATCGGTTCTATTCATGAAGAAATCAGTTGGCATCCTTTCCGGCCTGGCTATCGCCAtt < 4:245263/147‑1 (MQ=255) gACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGCAATCGGTTCTATTCATGAAGAAATCAGTTGGCATCCTTTCCGGCCTGGCTATCGCCAt < 2:27855/146‑1 (MQ=255) gattgggccgagtgctggcccaATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGc < 5:148421‑M2/33‑1 (MQ=255) gattgggccgagtgctggcccaATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGc > 6:148421‑M2/23‑55 (MQ=255) cTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGCAATCGGTTCTATTCATGAAGAAATCAGTTGGCATCCTTTCCGGCCTGGCTATCGCCATTGCCGt < 4:190200/149‑1 (MQ=255) aCTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGCAATCGGTTCTATTCATGAAGAAATCAGTTGGCATCCTTTCCGGCCTGGCTATCGCCATTGCCGTCGCAACTAcc > 1:1167/1‑149 (MQ=255) tCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGCAATCGGTTCTATTCATGAAGAAATCAGTTGGCATCCTTTCCGGCCTGGCTATCGCCATTGCCGTCGCAACTACCg > 1:327653/1‑148 (MQ=255) aTCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGCAATCGGTTCTATTCATGAAGAAATCAGTTGGCATCCTTTCCGGCCTGGCTATCGCCATTGCCGTCGCAACTACCGCAGGCGCCt < 3:78875/149‑1 (MQ=255) aTCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCATCTGGCCGCCATCGAAGCCCTTACGGACAGCAATCGGTTCTATTCATGAAGAAATCAGTTGGCATCCTTACCGGCCTGCCTATCGCCATTGCCGTCGCAACTACCGCAGGCGCCt > 1:265115/1‑149 (MQ=255) | TTTGTTCGGTTTTTGCGCGTTTTTTTGCGATTATGATCAATTTGTGTGTTCGTAAAAATTAACGATCCCTTTGCTTGCCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGCAATCGGTTCTATTCATGAAGAAATCAGTTGGCATCCTTTCCGGCCTGGCTATCGCCATTGCCGTCGCAACTACCGCAGGCGCCT > NC_002947/1407327‑1407617 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |