New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1407450 =	49 (0.860)	6 (0.110)	5/248	NT	11.6%	intergenic (‑350/‑98)	puuP/PP_1230	putrescine permease/hypothetical protein
	?	NC_002947	1407469 =	45 (0.830)					intergenic (‑369/‑79)	puuP/PP_1230	putrescine permease/hypothetical protein

GATTAAATACGGGGTTTGTTCGGTTTTTGCGCGTTTTTTTGCGATTATGATCAATTTGTGTGTTCGTAAAAATTAACGATCCCTTTG‑CTTGCCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGCAATCGGTTCTATTCATGAAGAAATCAGTTGGCATCCTTTCCGGCCTGGCTATCGCCATTGCCGT  >  NC_002947/1407313‑1407597                                                                                                                                           |                                                                                                                                                      gATTAAATACGGGGTTTGTTCGGTTTTTGCGCGTTTTTTTGCGATTATGATCAATTTGTGTGTTCGTAAAAATTAACGATCCCTTTGCCCTGCCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCAc                                                                                                                                            <  1:284955/149‑1 (MQ=255)        tACGGGGTTTGTTCGGTTTTTGCGCGTTTTTTTGCGATTATGATCAATTTGTGTGTTCGTAAAAATTAACGATCCCTTTG‑CTTGCCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGccc                                                                                                                                     >  7:84747/1‑148 (MQ=255)               tttGTTCGGTTTTTGCGCGTTTTTTTGCGATTATGATCAATTTGTGTGTTCGTAAAAATTAACGATCCCTTTG‑CTTGCCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCgggg                                                                                                                             <  4:151445/149‑1 (MQ=255)                 tGTTCGGTTTTTGCGCGTTTTTTTGCGATTATGATCAATTTGTGTGTTCGTAAAAATTAACGATCCCTTTG‑CTTGCCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCggggg                                                                                                                            <  5:91564/148‑1 (MQ=255)                   ttCGGTTTTTGCGCGTTTTTTTGCGATTATGATCAATTTGTGTGTTCGTAAAAATTAACGATCCCTTTG‑CTTGCCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCg                                                                                                                                         <  8:172004/133‑1 (MQ=255)                   ttCGGTTTTTGCGCGTTTTTTTGCGATTATGATCAATTTGTGTGTTCGTAAAAATTAACGATCCCTTTG‑CTTGCCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCg                                                                                                                                         >  7:172004/1‑133 (MQ=255)                    tCGGTTTTTGCGCGTTTTTTTGCGATTATGATCAATTTGTGTGTTCGTAAAAATTAACGATCCCTTTG‑CTTGCCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTc                                                                                                                                          >  2:305688/1‑131 (MQ=255)                      ggTTTTTGCGCGTTTTTTTGCTATTATGATCAATTTGTGTGTTCGTAAAAATTAACGATCCCTTTG‑CTTGCCGCAGCGTTATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTa                                                                                                                       <  1:111357/148‑1 (MQ=255)                      ggTTTTTGCGCGTTTTTTTGCGATTATGATCAATTTGTGTGTTCGTAAAAATTAACGATCCCTTTG‑CTTGCCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTa                                                                                                                       <  4:325391/148‑1 (MQ=255)                       gTTTTTGCGCGTTTTTTTGCGATTATGATCAATTTGTGTGTTCGTAAAAATTAACGATCCCTTTG‑CTTGCCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGggtg                                                                                                                          <  6:315284/144‑1 (MQ=255)                       gTTTTTGCGCGTTTTTTTGCGATTATGATCAATTTGTGTGTTCGTAAAAATTAACGATCCCTTTG‑CTTGCCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTAct                                                                                                                     <  3:40782/149‑1 (MQ=255)                       gTTTTTGCGCGTTTTTTTGCGATTATGATCAATTTGTGTGTTCGTAAAAATTAACGATCCCTTTG‑CTTGCCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTACTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGggtg                                                                                                                          >  5:315284/1‑144 (MQ=255)                          tttGCGCGTTTTTTTGCGATTATGATCAATTTGTGTGTTCGTAAAAATTAACGATCCCTTTG‑CTTGCCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTActct                                                                                                                   <  2:364102/148‑1 (MQ=255)                               gcgTTTTTTTGCGATTATGATCAATTTGTGTGTTCGTAAAAATTAACGATCCCTTTG‑CTTGCCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCgggg                                                                                                                             <  6:47578/133‑1 (MQ=255)                               gcgTTTTTTTGCGATTATGATCAATTTGTGTGTTCGTAAAAATTAACGATCCCTTTG‑CTTGCCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCgggg                                                                                                                             >  5:47578/1‑133 (MQ=255)                               gcgTTTTTTTGCGATTATGATCAATTTGTGTGTTCGTAAAAATTAACGATCCCTTTG‑CTTGCCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAAtt                                                                                                             >  2:266207/1‑149 (MQ=255)                                           gATTATGATCAATTTGTGTGTTCGTAAAAATTAACGATCCCTTTG‑CTTGCCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGcc                                                                                                 >  4:184435/1‑148 (MQ=255)                                               aTGATCAATTTGTGTGTTCGTAAAAATTAACGATCCCTTTG‑CTTGCCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTg                                                                                             <  7:262454/148‑1 (MQ=255)                                                tGATCAATTTGTGTGTTCGTAAAAATTAACGATCCCTTTG‑CTTGCCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGgc                                                                                           >  1:327704/1‑149 (MQ=255)                                                 gATCAATTTGTGTGTTCGTAAAAATTAACGATCCCTTTG‑CTTGCCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑Ag                                                                                                                                               >  3:262624/1‑97 (MQ=255)                                                 gATCAATTTGTGTGTTCGTAAAAATTAACGATCCCTTTG‑CTTGCCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑Ag                                                                                                                                               <  4:262624/97‑1 (MQ=255)                                                 gATCAATTTGTGTGTTCGTAAAAATTAACGATCCCTTTG‑CTTGCCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGgcc                                                                                          >  5:107293/1‑149 (MQ=255)                                                       tttGTGTGTTCGTAAAAATTAACGATCCCTTTG‑CTTGCCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTc                                                                                    <  4:103570/149‑1 (MQ=255)                                                                   tAAAAATTAACGATCCCTTTG‑CTTGCGGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACg                                                                        >  4:78875/1‑149 (MQ=255)                                                                   tAAAAATTAACGATCCCTTTG‑CTTGCCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACg                                                                        >  2:289060/1‑149 (MQ=255)                                                                     aaaaTTAACGATCCCTTTG‑CTTGCCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGa                                                                      >  8:133461/1‑149 (MQ=255)                                                                              gATCCCTTTG‑CTTGCCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGCAATCg                                                             >  3:176388/1‑149 (MQ=255)                                                                                   cTTTG‑CTTGCCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTGCTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGCAATCGGTTc                                                         >  6:66285/1‑148 (MQ=255)                                                                                   cTTTG‑CTTGCCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGCAATCGGTTc                                                         >  3:190200/1‑148 (MQ=255)                                                                                         cttgcCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTCGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGCAATCGGTTCTATTc                                                    <  8:84747/148‑1 (MQ=255)                                                                                            gcCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGCAATCGGTTCTATTCAt                                                  <  4:176388/147‑1 (MQ=255)                                                                                                   cGTGATGTCGGATGTGTCAGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGcc                                                                              <  1:88229/112‑1 (MQ=255)                                                                                                   cGTGATGTCGGATGTGTCAGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGcc                                                                              >  2:88229/1‑112 (MQ=255)                                                                                                    gTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGCAATCGGTTCTATTCATGAAGAAATCa                                        <  3:184435/149‑1 (MQ=255)                                                                                                     tGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCTCTCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGCAATCGGTTCTATTCATGAAGAAATCa                                        <  1:289060/149‑1 (MQ=255)                                                                                                         gTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGCAATCGGTTCTATTCATGAAGAAATCAGTTgg                                   >  1:27855/1‑149 (MQ=255)                                                                                                          gccacgcagaaattgaagagtaccacccccgatTGGGCC‑AGCACTCGGCCCAATc                                                                                                                                 <  5:148421‑M1/22‑1 (MQ=255)                                                                                                          gccacgcagaaattgaagagtaccacccccgatTGGGCC‑AGCACTCGGCCCAATc                                                                                                                                 >  6:148421‑M1/34‑55 (MQ=255)                                                                                                                   tCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGCAATCGGTTCTa                                                       >  8:219771/1‑119 (MQ=255)                                                                                                                   tCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGCAATCGGTTCTa                                                       <  7:219771/119‑1 (MQ=255)                                                                                                                   tCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGCAATCGGTTCTATTCATGAAGAAATCa                                        <  3:168164/134‑1 (MQ=255)                                                                                                                   tCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGCAATCGGTTCTATTCATGAAGAAATCa                                        >  4:168164/1‑134 (MQ=255)                                                                                                                   tCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGCAATCGGTTCTATTCATGAAGAAATCAGTTGGCATCCTTTcc                         <  3:36933/149‑1 (MQ=255)                                                                                                                   tCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGCAATCGGTTCTATTCATGAAGAAATCAGTTGGCATCCTTTcc                         >  3:245263/1‑149 (MQ=255)                                                                                                                   tCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGCAATCGGTTCTATTCATGAAGAAATCAGTTGGCATCCTTTcc                         <  2:327704/149‑1 (MQ=255)                                                                                                                     cGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑Gc                                                                                                       >  3:299860/1‑69 (MQ=255)                                                                                                                     cGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑Gc                                                                                                       <  4:299860/69‑1 (MQ=255)                                                                                                                          aaTGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGTAATCGGTTCTATTCATGAAGAAATCAGTTGGCATCCTTTCCGGCCTgg                  <  1:266207/149‑1 (MQ=255)                                                                                                                               cATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGTCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGCAATCGGTTCTATTCATGAAGAAATCAGTTGGCATCCTTTCCGGCCTGGCTATc             <  7:89000/149‑1 (MQ=255)                                                                                                                                aTTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGCAATCGGTTCTATTCATGAAGAAATCAGTTGGCATCCTTTCCGGCCTGGCTATCg            >  4:214587/1‑149 (MQ=255)                                                                                                                                   tctcGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGCAATCGGTTCTATTCATGAAGAAATCAGTTGGCATCCTTTCCGGCCTGGCTATCGCCa         >  7:278439/1‑149 (MQ=255)                                                                                                                                   cccccgatTGGGCCGAGTGCT‑GGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGAc                                                                     <  1:104011‑M1/81‑1 (MQ=255)                                                                                                                                   cccccgatTGGGCCGAGTGCT‑GGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGAc                                                                     >  2:104011‑M1/9‑89 (MQ=255)                                                                                                                                   cccccgatTGGGCCGAGTGCT‑GGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGCAATCGGTTCTATTCATGAAGAAATCAGTTGGCATCCTTTCCGGCCTGGCTATCGCCa         <  1:217794‑M1/141‑1 (MQ=255)                                                                                                                                    ccccgatTGGGCCGAGTGCT‑GGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGCAATCGGTTCTATTCATGAAGAAATCAGTTGGCATCCTTTCCGGCCTGGCTATCGCCAt        <  8:307760‑M1/142‑1 (MQ=255)                                                                                                                                       gACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGCAATCGGTTCTATTCATGAAGAAATCAGTTGGCATCCTTTCCGGCCTGGCTATCGCCAtt       <  4:245263/147‑1 (MQ=255)                                                                                                                                       gACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGCAATCGGTTCTATTCATGAAGAAATCAGTTGGCATCCTTTCCGGCCTGGCTATCGCCAt        <  2:27855/146‑1 (MQ=255)                                                                                                                                          cTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGCAATCGGTTCTATTCATGAAGAAATCAGTTGGCATCCTTTCCGGCCTGGCTATCGCCATTGCCGt  <  4:190200/149‑1 (MQ=255)                                                                                                                                           |                                                                                                                                                      GATTAAATACGGGGTTTGTTCGGTTTTTGCGCGTTTTTTTGCGATTATGATCAATTTGTGTGTTCGTAAAAATTAACGATCCCTTTG‑CTTGCCGCAGCGTGATGTCGGATGTGTCCGAAAAATGGCATTTCTCGACCTGGGCC‑AGCACTCGGCCCAATCGGGGGTGGTACTCTTCAATTTCT‑GCGTGGCCTCTGGCCGCCTTCGAAGCCCTTACGGACAGCAATCGGTTCTATTCATGAAGAAATCAGTTGGCATCCTTTCCGGCCTGGCTATCGCCATTGCCGT  >  NC_002947/1407313‑1407597

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.