New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1532482	49 (0.860)	4 (0.070)	4/250	NT	7.8%	coding (493/2820 nt)	secA	protein translocase subunit SecA
	?	NC_002947	= 1532501	47 (0.860)					coding (512/2820 nt)	secA	protein translocase subunit SecA

AGCTGATTGGCGGCATGACCCTGCACGAGGGTATGATCGCAGAAATGCGCACCGGTGAAGGCAAGACCTTGGTCGGTACCTTGGCCGTCTACCTCAACGCATTGTCCGGCAAGGGCGTGCATGTGGTCACCGTCAACGACTACCTGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1532333‑1532482 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcATCCAGTTGGCGTCACGGCGCGCCAGGTAGTC  <  NC_002947/1532501‑1532470                                                                                                                                                                                        AGCTGATTGGCGGCATGACCCTGCACGAGGGTATGATCGCAGAAATGCGCACCGGTGAAGGCAAGACCTTGGTCGGTACCTTGGCCGTCTACCTCAACGCATTGTCCGGCAAGGGCGTGCATGTGGTCACCGTCAACGACTACCTGGCG                                   >  1:145113/1‑149         GGCGGCATGACCCTGCACGAGGGTATGATCGCAGAAATGCGCACCGGTGAAGGCAAGACCTTGGTCGGTACCTTGGCCGTCTACCTCAACGCATTGTCCGGCAAGGGCGTGCATGTGGTCACCGTCAACGACTACCTGGCGCATCCAGT                           >  2:107228/1‑149                                  TGATCGCAGAAATGCGCACCGGTGAAGGCAAGACCTTGGTCGGTACCTTGGCCGTCTACCTCAACGCATTGTCCGGCAAGGGCGTACATGTGGTCACCGTCAACGACTACCTGGCGCATCCAGTTGGCGTCACGGCGCGCCAGGTAGTC  <  1:107228/149‑1                                     TCGCAGAAATGCGCACCGGTGAAGGCAAGACCTTGGTCGGTACCTTGGCCGTCTACCTCAACGCATTGTCCGGCAAGGGCGTGCATGTGGTCACCGTCAACGACTACCTGGCGCATCCAGTTGGCGTCACGGCGCGCCAGGTA     <  5:246230/143‑1                                     TCGCAGAAATGCGCACCGGTGAAGGCAAGACCTTGGTCGGTACCTTGGCCGTCTACCTCAACGCATTGTCCGGCAAGGGCGTGCATGTGGTCACCGTCAACGACTACCTGGCGCATCCAGTTGGCGTCACGGCGCGCCAGGTA     >  6:246230/1‑143                                                                                                                                                                                        AGCTGATTGGCGGCATGACCCTGCACGAGGGTATGATCGCAGAAATGCGCACCGGTGAAGGCAAGACCTTGGTCGGTACCTTGGCCGTCTACCTCAACGCATTGTCCGGCAAGGGCGTGCATGTGGTCACCGTCAACGACTACCTGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1532333‑1532482 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcATCCAGTTGGCGTCACGGCGCGCCAGGTAGTC  <  NC_002947/1532501‑1532470

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.