New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1532482	49 (0.860)	4 (0.070)	4/250	NT	7.8%	coding (493/2820 nt)	secA	protein translocase subunit SecA
	?	NC_002947	= 1532501	47 (0.860)					coding (512/2820 nt)	secA	protein translocase subunit SecA

CTGCACGAGGGTATGATCGCAGAAATGCGCACCGGTGAAGGCAAGACCTTGGTCGGTACCTTGGCCGTCTACCTCAACGCATTGTCCGGCAAGGGCGTGCATGTGGTCACCGTCAACGACTACCTGGCGCGCCGTGACGCCAACTGGATGCGCCCGCTGTACGAGTTCCTCGGTCTGTCGGTCGGTATCGTCTCGGCCTTCCAGCCGCCGGAAGAAAAGCGCGCCGCCTATGCAGCCGACATCACCTACGGCACCAACAACGAATTCGGGTTCGACTACCTGCGCGACAACATGGC  >  NC_002947/1532353‑1532648                                                                                                                                                     |                                                                                                                                                    cTGCACGAGGGTATGCTCGCAGAAATGCGCACCGGTGAAGGCAAGACCTTGGTCGGTACCTTGGCCGTCTACCTCAACGCATTGTCCGGCAAGGGCGTGCATGTGGTCACCGTCAACGACTACCTGGCGCGCCGTGACGCCAACTGGAt                                                                                                                                                     <  7:287912/149‑1 (MQ=255)                 tCGCAGAAATGCGCACCGGTGAAGGCAAGACCTTGGTCGGTACCTTGGCCGTCTACCTCAACGCATTGTCCGGCAAGGGCGTGCATGTGGTCACCGTCAACGACTACCTGGCGCGCCGTGACGCCAACTGGATGCGCCCGCTGTACGAg                                                                                                                                     <  8:39277/149‑1 (MQ=255)                              cACCGGTGAAGGCAAGACCTTGGTCGGTACCTTGGCCGTCTACCTCAACTCATTGTCCGGCAAGGGCGTGCATGTGGTCACCGTCAACGACTACCTGGCGCGCCGTGACGCCAACTGGATGCGCCCGCTGTACGAGTTCCTCGGTCTgt                                                                                                                        <  5:34945/149‑1 (MQ=255)                              cACCGGTGAAGGCAAGACCTTGGTCGGTACCTTGGCCGTCTACCTCAACGCATTGTCCGGCAAGGGCGTGCATGTGGTCACCGTCAACGACTACCTGGCGCGCCGTGACGCCAACTGGATGCGCCCGCTGTACGAGTTCCTCGGTCTgt                                                                                                                        <  2:145113/149‑1 (MQ=255)                                         gCAAGACCTTGGTCGGTACCTTGGCCGTCTACCTCAACGCATTGTCCGGCAAGGGCGTGCATGTGGTCACCGTCAACGACTACCTGGCGCGCCGTGACGCCAACTGGATGCGCCCGCTGTACGAGTTCCTCGGt                                                                                                                            <  3:39720/134‑1 (MQ=255)                                         gCAAGACCTTGGTCGGTACCTTGGCCGTCTACCTCAACGCATTGTCCGGCAAGGGCGTGCATGTGGTCACCGTCAACGACTACCTGGCGCGCCGTGACGCCAACTGGATGCGCCCGCTGTACGAGTTCCTCGGt                                                                                                                            >  4:39720/1‑134 (MQ=255)                                         gCAAGACCTTGGTCGGTACCTTGGCCGTCTACCTCAACGCATTGTCCGGCAAGGGCGTGCATGTGGTCACCGTCAACGACTACCTGGCGCGCCGTGACGCCAACTGGATGCGCCCGCTGTACGAGTTCCTCGGTCTGTCGGTCGGTATc                                                                                                             >  5:59026/1‑149 (MQ=255)                                         gCAAGACCTTGGTCGGTACCTTGGCCGTCTACCTCAACGCATTGTCCGGCAAGGGCGTGCATGTGGTCACCGTCAACGACTACCTGGCGCGCCGTGACGCCAACTGGATGCGCCCGCTGTACGAGTTCCTCGGTCTGTCGGTCGGTATc                                                                                                             <  4:91420/149‑1 (MQ=255)                                          cAAGACCTTGGTCGGTACCTTGGCCGTCTACCTCAACGCATTGTCCGGCAAGGGCGTGCATGTGGTCACCGTCAACGACTACCTGGCGCGCCGTGACGCCAACTGGATGCGCCCGCTGTACGAGTTCCTCGGTCTGTCGGTCGGTATCg                                                                                                            >  1:23810/1‑149 (MQ=255)                                                            cTTGGCCGTCTACCTCAACGCATTGTCCGGCAAGGGCGTGCATGTGGTCACCGTCAACGACTACCAGGCGCGCCGTAACGCCAACTGGATGCGCCAGCTGTACGAGTTCCTCGGTCTGTCTGTCGGTATCGTCTCGTCCTTCCAgccgc                                                                                          >  4:235281/1‑149 (MQ=255)                                                             ttGGCCGTCTACCTCAACGCATTGTCCGGCAAGGGCGTGCATGTGGTCACCGTCAACGACTACCTGGCGCGCCGTGACGCCAACTGGATGCGCCCGCTGTACGAGTTCCTCGGTCTGTCGGTCGGTATCGTCTCGGCCTTCCAgccgcc                                                                                         >  8:118042/1‑149 (MQ=255)                                                                 ccGTCTACCTCAACGCATTGTCCGGCAAGGGCGTGCATGTGGTCACCGTCAACGACTACCTGGCGCGCCGTGACGCCAACTGGATGCGCCCGCTGTACGAGTTCCTCGGTCTGTCGGTCGGTATCGTCTCGGCCTTCCAGCCGCCGgaa                                                                                     <  2:328468/149‑1 (MQ=255)                                                                  cGTCTACCTCAACGCATTGTCCGGCAAGGGCGTGCATGTGGTCACCGTCAACGACTACCTGGCGCGCCGTGACGCCAACTGGATGCGCCCGCTGTACGAGTTCCTCGGTCTGTCGGTTGGTATCGTCTCGGCCTTCCAGCCGCCGgaag                                                                                    <  1:345500/149‑1 (MQ=255)                                                                    tCTACCTCAACGCATTGTCCGGCAAGGGCGTGCATGTGGTCACCGTCAACGACTACCTGGCGCGCCGTGACGCCAACTGGATGCGCCCGATGTACGAGTTCCTCGGTCTGTCGGTCGGTATCGTCTCAGCCTTCCAGCCGCCGgaaga                                                                                   >  4:233894/1‑148 (MQ=255)                                                                        ccTCAACGCATTGTCCGGCAAGGGCGTGCATGTGGTCACCGTCAACGACTACCTGGCGCGCCGTGACGCCAACTGGATGCGCCCGCTGTACGAGTTCCTCGGTCt                                                                                                                          <  8:145230/105‑1 (MQ=255)                                                                        ccTCAACGCATTGTCCGGCAAGGGCGTGCATGTGGTCACCGTCAACGACTACCTGGCGCGCCGTGACGCCAACTGGATGCGCCCGCTGTACGAGTTCCTCGGTCt                                                                                                                          >  7:145230/1‑105 (MQ=255)                                                                          tCAACGCATTGTCCGGCAAGGGCGTGCATGTGGTCACCGTCAACGACTACCTGGCGCGCCGTGACGCCAACTGGATGCGCCCGCTGTACGAGTTCCTCGGTCTGTCGGTCGGTATCGTCTCGGCCTTCCAGCCGCCGGAAGAAAAgcgc                                                                            >  7:226406/1‑149 (MQ=255)                                                                            aaCGCATTGTCCGGCAAGGGCGTGCATGTGGGCAGCGTCAACGACTACCTGGCGCGCCGGGACGCCAACTGGATGCGCCCGCTGTACGAGTGCCTCGGTCTGTCGGTCGGTATCGTCTCGGCCTTCCAGCCGCCGGAAGAAAAgcgcgc                                                                          <  6:249739/149‑1 (MQ=255)                                                                              cGCATTGTCCGGCAAGGGCGTGCATGTGGTCACCGTCAACGACTACCTGGCGCGCCGTGACGCCAACTGGATGCGCCCGCTGTACGAGTTCCTCGGTCTGTCGGTCGGTATCGTCTCGGCCTTCCAGCCGCCGGAAGAAAAGCGcgccg                                                                        >  8:273336/1‑149 (MQ=255)                                                                               gCATTGTCCGGCAAGGGCGTGCATGTGGTCACCGTCAACGACTACCTGGCGCGCCGTGACGCCAACTGGATGCGCCCGCTGTACGAGTTCCTCGGTCTGTCGGTCGGTATCGTCTCGGCCTTCCAGCCGCCGGAAGAAAAGCGcgccgc                                                                       >  3:102723/1‑149 (MQ=255)                                                                                cATTGTCCGGCAAGGGCGTGCATGTGGTCACCGTCAACGACTACCTGGCGCGCCGTGACGCCAACTGGATGCGCCCGCTGTACGAGTTCCTCGGTCTGTCGGTCGGTATCGTCTCGGCCTTCCAGCCGCCGGAAGAAAAGCGCgccgcc                                                                      >  5:332688/1‑149 (MQ=255)                                                                                    gTCCGGCAAGGGCGTGCATGTGGTCACCGTCAACGACTACCTGGCGCGCCGTGACGCCAACTGGATGCGCCCGCTGTACGAGTTCCTCGGTCTGTCGGTCGGTATCGTCTCGGCCTTCCAGCCGCCGGAAGAAAAGCGCGCCGCCTAt                                                                   <  7:118042/148‑1 (MQ=255)                                                                                      ccGGCAAGGGCGTGCATGTGGTCACCGTCAACGACTACCTGGCGCGCCGTGACGCCAACTGGATGCGCCCGCTGTACGAGTTCCTCGGTCTGTCGGTCGGTATCGTCTCGGCCTTCCAGCCGCCGGAAGAAAAGCGCGCCGCCTATg                                                                  <  3:308707/147‑1 (MQ=255)                                                                                      ccGGCAAGGGCGTGCATGTGGTCACCGTCAACGACTACCTGGCGCGCCGTGACGCCAACTGGATGCGCCCGCTGTACGAGTTCCTCGGTCTGTCGGTCGGTATCGTCTCGGCCTTCCAGCCGCCGGAAGAAAAGCGCGCCGCCTATg                                                                  >  4:308707/1‑147 (MQ=255)                                                                                        ggCAAGGGCGTGCATGTGGTCACCGTCAACGACTACCTGGCGCGCCGTGACGCCAACTGGATGCGCCCGCTGTACGAGTTCCTCGGTCTGTCGGTCGGTATCGTCTCGGCCTTCCAGCCGCCGGAAGAAAAGCGCGCCGCCTATGCAGc                                                              <  2:23810/149‑1 (MQ=255)                                                                                           aaGGGCGTGCATGTGGTCACCGTCAACGACTACCTGGCGCGCCGTGACGCCAACTGGATGCGCCCGCTGTACGAGTTCCTCGGTCTGTCGGTCGGTATCGTCTCGGCCTTCCAGCCGCCGGAAGAAAAGCGCGCCGCCTATGCAGCCGa                                                           <  6:152470/149‑1 (MQ=255)                                                                                           aaGGGCGTGCATGTGGTCACCGTCAACGACTACCTGGCGCGCCGTGACGCCAACTGGATGCGCCCGCTGTACGAGTTCCTCGGTCTGTCGGTCGGTATCGTCTCGGCCTTCCAGCCGCCGGAAGAAAAGCGCGCCGCCTATGCAGCCGa                                                           <  4:102723/149‑1 (MQ=255)                                                                                                       gtgGTCACCGTCAACGACTACCTGGCGCGCCGTGACGCCAACTGGATGCGCCCGCTGTACGAGTTCCTCGGTCTGTCGGTCGGTATCGTCTCGGCCTTCCAGCCGCCGGAAGAAAAGCGCGCCGCCTATGCAGCCGACATCACCTACgg                                               >  6:138249/1‑149 (MQ=255)                                                                                                             aCCGTCAACGACTACCTGGCGCGCCGTGACGCCAACTGGATGCGCCCGCTGTACGAGTTCCTCGGTCTGTCGGTCGGTATCGTCTCGGCCTTCCAGCCGCCGGAAGAAAAGCGCGCCGCCTATGCAGCCGACATCACCTACGGCACcaa                                         >  4:225375/1‑149 (MQ=255)                                                                                                                gTCAACGACTACCTGGCGCGCCGTGACGCCAACTGGATGCGCCCGCTGTACGAGTTCCTCGGTCTGTCGGTCGGTATCTTCTCGGCCTTCCAGCCGCCGGAAGAAAAGCGCGCCGCCTATGCAGCCGACATCACCTa                                                  <  1:281766/137‑1 (MQ=255)                                                                                                                gTCAACGACTACCTGGCGCGCCGTGACGCCAACTGGATGCGCCCGCTGAACGAGTTCCACGGTCTGTCGGTCGGTATCGTCTCGGCCTTCCCGCCGCCGGAAGAAAAGCGCGCCCCCAATGCACCCGACATCACCTa                                                  >  2:281766/1‑137 (MQ=255)                                                                                                                 tCAACGACTACCTGGCGCGCCGTGACGCCAACTGGATGCGCCCGCTGTACGAGTTCCTCGGTCTGTCGGTCGGTATCGTCTCGGCCTTCCAGCCGCCGGAAGAAAAGCGCGCCGCCTATGCAGCCGACATCACCTACGGCACCaacaac                                     <  3:225375/149‑1 (MQ=255)                                                                                                                   aaCGACTACCTGGCGCGCCGTGACGCCAACTGGATGCGCCCGCTGTACGAGTTCCTCGGTCTGTCGGTCGGTATCGTCTCGGCCTTCCAGCCGCCGGAAGAAAAGCGCGCCGCCTATGCAGCCGACATCACCTACGGCACCAACAACg                                    <  7:273336/148‑1 (MQ=255)                                                                                                                     cGACTACCTGGCGCGCCGTGACGCCAACTGGATGCGCCCGCTGTACGAGTTCCTCGGTCTGTCGGTCGGTATCGTCTCGGCCtt                                                                                                  >  7:99010/1‑84 (MQ=255)                                                                                                                     cGACTACCTGGCGCGCCGTGACGCCAACTGGATGCGCCCGCTGTACGAGTTCCTCGGTCTGTCGGTCGGTATCGTCTCGGCCtt                                                                                                  <  8:99010/84‑1 (MQ=255)                                                                                                                      gACTACCTGGCGCGCCGTGACGCCAACTGGATgcgccaggtagtcgttgacggtgaccacatgtacgcccttgccggacaatgcgttgaggtagacggccaaggtaccgaccaaggtcttgccttcaccggtgcgcatttctgcgatca                                <  1:107228‑M2/149‑118 (MQ=255)                                                                                                                        cTACCTGGCGCGCCGTGACGCCAACTGGATGCGCCCGCTGTACGAGTTCCTCGGTCTGTCGGTCGGTATCGTCTCGGCCTTCCAGCCGCCGGAAGAAAAGCGCTCCGCCTATGCAGCCGACATCACCTACGGCACCAACAACGAATTCg                              <  2:99012/149‑1 (MQ=255)                                                                                                                         tACCTGGCGCGCCGTGACGCCAACTGGATgcgccaggtagtcgttgacggtgaccacatgcacgcccttgccggacaatgcgttgaggtagacggccaaggtaccgaccaaggtcttgccttcaccggtgcgcatttctgcga                                   >  6:246230‑M2/1‑29 (MQ=255)                                                                                                                         tACCTGGCGCGCCGTGACGCCAACTGGATgcgccaggtagtcgttgacggtgaccacatgcacgcccttgccggacaatgcgttgaggtagacggccaaggtaccgaccaaggtcttgccttcaccggtgcgcatttctgcga                                   <  5:246230‑M2/143‑115 (MQ=255)                                                                                                                         tACCTGGCGCGCCGTGACGCCAACTGGATGCGCCCGCTGTACGAGTTCCTCGGTCTGTCGGTCGGTATCGTCTCGGCCTTCCAGCCGCCGGAAGAAAAGCGCGCCGCCTATGCAGCCGACATCACCTACGGCACCAACAACGAATTCgg                             >  2:36019/1‑149 (MQ=255)                                                                                                                           ccTGGCGCGCCGTGACGCCAACTGGATGCGCCCGCTGTACGAGTTCCTCGGTCTGTCGGTCGGTATCGTCTCGGCCTTCCAGCCGACGGAAGAAAAGCGCGCCGCCTATGCAGCCGACATCACCTACGGCACCaacaac                                     <  2:334234/139‑1 (MQ=255)                                                                                                                           ccTGGCGCGCCGTGACGCCAACTGGATGCGCCCGCTGTACGAGTTCCTCGGTCTGTCGGTCGGTATCGTCTCGGCCTTCCAGCCGACGGAAGAAAAGCGCGCCGCCTATGCAGCCGACATCACCTACGGCACCaacaac                                     >  1:334234/1‑139 (MQ=255)                                                                                                                             tGGCGCGCCGTGACGCCAACTGGATGCGCCCGCTGTACGAGTTCCTCGGTCTGTCGGTCGGTATCGTCTCGGCCTTCCAGCCGCCGGAAGAAAAGCGCGCCGCCTATGCAGCCGACATCACCTACGGCACCAACAACGAATTCgg                             >  2:126332/1‑145 (MQ=255)                                                                                                                             tGGCGCGCCGTGACGCCAACTGGATGCGCCCGCTGTACGAGTTCCTCGGTCTGTCGGTCGGTATCGTCTCGGCCTTCCAGCCGCCGGAAGAAAAGCGCGCCGCCTATGCAGCCGACATCACCTACGGCACCAACAACGAATTCgg                             <  1:126332/145‑1 (MQ=255)                                                                                                                                cgcgcCGTGACGCCAACTGGATGCGCCCGCTGTACGAGTTCCTCGGTCTGTCGGTCGGTATCGTCTCGGCCTTCCAGCCGCCGGAAGAAAAGCGCGCCGCCTATGCAGCCGACATCACCTACGGCACCAACAACGAATTCGGGTTCGAc                      <  6:332688/149‑1 (MQ=255)                                                                                                                                 gcgcCGTGACGCCAACTGGATGCGCCCGCTGTACGAGTTCCTCGGTCTGTCGGTCGGTATCGTCTCGGCCTTCCAGCCGCCGGAAGAAAAGCGCGCCGCCTATGCAGCCGACATCACCTACGGCACCAACAACGAATTCGGGTTCGACt                     <  6:59026/149‑1 (MQ=255)                                                                                                                                     cGTGACGCCAACTGGATGCGCCCGCTGTACGAGTTCCTCGGTCTGTCGGTCGGTATCGTCTCGGCCTTCCAGCCGCCGGAAGAAAAGCGCGCCGCCTATGCAGCCGACATCACCTACGGCACCAACAACGAATTCGGGTTCGACTACCt                 >  1:68007/1‑149 (MQ=255)                                                                                                                                         aCGCCAACTGGATGCGCCCGCTGTACGAGTTCCTCGGTCTGTCGGTCGGTATCGTCTCGGCCTTCCAGCCGCCGGAAGAAAAGCGCGCCGCCTATGCAGCCGACATCACCTACGGCACCAACAACGAATTCGGGTTCGACTACCTgcgc             <  3:233894/149‑1 (MQ=255)                                                                                                                                         aCGCCAACTGGATGCGCCCGCTGTACGAGTTCCTCGGTCTGTCGGTCGGTATCGTCTCGGCCTTCCAGCCGCCGGAAGAAAAGCGCGCCGCCTATGCAGCCGACATCACCTACGGCACCAACAACGAATTCGGGTTCGACTACCTgcg              <  5:138249/148‑1 (MQ=255)                                                                                                                                            ccAACTGGATGCGCCCGCTGTACGAGTTCCTCGGTCTGTCGGTCGGTATCGTCTCGGCCTTCCAGCCGCCGGAAGAAAAGCGCGCCGCCTATGCAGCCGACATCACCTACGGCACCAACAACGAATTCGGGTTCGACTACCTGCGCGa           >  3:46386/1‑148 (MQ=255)                                                                                                                                            ccAACTGGATGCGCCCGCTGTACGAGTTCCTCGGTCTGTCGGTCGGTATCGTCTCGGCCTTCCAGCCGCCGGAAGAAAAGCGCGCCGCCTATGCAGCCGACATCACCTACGGCACCAACAACGAATTCGGGTTCGACTACCTGCGCGa           >  3:302730/1‑148 (MQ=255)                                                                                                                                               aCTGGATgcgccaggtagtcgttgacggtgaccacatgcacgcccttgccggacaatgcgttgaggtagacggccaaggtaccgaccaaggtcttgccttcaccggtgcgcatttctgcgatcataccctcgtgcagggtcatgccgcc       >  2:107228‑M2/1‑7 (MQ=255)                                                                                                                                                    aTGCGCCCGCTGTACGAGTTCCTGGGTCTGTCGGTCGGTATCGTCTCGGCCTTCCAGCCGCCGGAAGAAAAGCGCGCCTCCTATGCAGCCGACATCACCTACGGCACCAACAACGAATTCGGGTTCGACTACCTGCGCGACAACATGGc  <  3:235281/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    CTGCACGAGGGTATGATCGCAGAAATGCGCACCGGTGAAGGCAAGACCTTGGTCGGTACCTTGGCCGTCTACCTCAACGCATTGTCCGGCAAGGGCGTGCATGTGGTCACCGTCAACGACTACCTGGCGCGCCGTGACGCCAACTGGATGCGCCCGCTGTACGAGTTCCTCGGTCTGTCGGTCGGTATCGTCTCGGCCTTCCAGCCGCCGGAAGAAAAGCGCGCCGCCTATGCAGCCGACATCACCTACGGCACCAACAACGAATTCGGGTTCGACTACCTGCGCGACAACATGGC  >  NC_002947/1532353‑1532648

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.