| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1579919 | 47 (0.830) | 4 (0.080) | 4/242 | NT | 8.3% | coding (1478/3153 nt) | ttgB | efflux pump membrane protein TtgB |
| ? | NC_002947 | = 1579940 | 45 (0.850) | coding (1457/3153 nt) | ttgB | efflux pump membrane protein TtgB | |||||
GCCAGCAGGAATGGCACCTTGTTGCGCAAGATGGCGCCTACACTGCGCTCGTAGCCGTTGACGCTGCGGTCGAAGTTGCGGTTGAACCAGCCGAAGAAGCCACCTTTGGCGGTGTGGTGCTCGCCCTTCTTCAGCGGTTTGAGCATGGTTGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1579766‑1579919‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggttgcgcTGATCTTCACCCCGGCGCTCTGCGCAACCATGCTCAAACCGCTGAAGAAGGGCGAGCACCACACCGCCAAAGGTGGCTTCTTCGGCTGGTTCAACCGCAACTTCGACCGCAGCGTCAACGGCTACGAGCGCAGTGTAGGCGCCATCT < NC_002947/1579940‑1579794 GCCAGCAGGAATGGCACCTTGTTGCGCAAGATGGCGCCTACACTGCGCTCGTAGCCGTTGACGCTGCGGTCGAAGTTGCGGTTGAACCAGCCGAAGAAGCCACCTTTGGCGGTGTGGTGCTCGCCCTTCTTCAGCGGTTTGAGCATGGT > 3:39236/1‑149 AGCAGGAATGGCACCTTGTTGCGCAAGATGGCGCCTACACTGCGCTCGTAGCCGTTGACGCTGCGGTCGAAGTTGCGGTTGAACCAGCCGAAGAAGCCACCTTTGGCGGTGTGGTGCTCGCCCTTCTTCAGCGGTTTGAGCATGGTTGC > 2:322777/1‑149 CACCTTGTTGCGCAAGATGGCGCCTACACTGCGCTCGTAGCCGTTGACGCTGCGGTCGAAGTTGCGGTTGAACCAGCCGAAGAAGCCACCTTTGGCGGTGTGGTGCTCGCCCTTCTTCAGCGGTTTGAGCATGGTTGCG < 3:145326/139‑1 CACCTTGTTGCGCAAGATGGCGCCTACACTGCGCTCGTAGCCGTTGACGCTGCGGTCGAAGTTGCGGTTGAACCAGCCGAAGAAGCCACCTTTGGCGGTGTGGTGCTCGCCCTTCTTCAGCGGTTTGAGCATGGTTGCG > 4:145326/1‑139 GCGCCTACACTGCGCTCGTAGCCGTTGACGCTGCGGTCGAAGTTGCGGTTGAACCAGCCGAAGAAGCCACCTTTGGCGGTGTGGTGCTCGCCCTTCTTCAGCGGTTTGAGCATGGTTGCGCTGATCTTCACCCCGGCGCTCTGCGCAAC < 8:232861/149‑1 CACTGCGCTCGTAGCCGTTGACGCTGCGGTCGAAGTTGCGGTTGAACCAGCCGAAGAAGCCACCTTTGGCGGTGTGGTGCTCGCCCTTCTTCAGCGGTTTGAGCATGGTTGCGCTGATCTTCACCCCGGCGCTCTGCGCAACCATGCTC < 4:39236/149‑1 GTTGAACCAGCCGAAGAAGCCACCTTTGGCGGTGTGGTGCTCGCCCTTCTTCAGCGGTTTGAGCATGGTTGCGCTGATCTTCACCCCGGCGCTCTGCGCAACCATG > 5:150441/1‑106 GTTGAACCAGCCGAAGAAGCCACCTTTGGCGGTGTGGTGCTCGCCCTTCTTCAGCGGTTTGAGCATGGTTGCGCTGATCTTCACCCCGGCGCTCTGCGCAACCATG < 6:150441/106‑1 GTTGCGCTGATCTTCACCCCGGCGCTCTGCGCAACCTTGCTCAAACCGCTGAAGAAGGGCGAGCACCACACCGCCAAAGGTGGCTTCTTCGGCTGGTTCAACCGCAACTTCGACCGCAGCGTCAACGGCTACGAGCGCAGTGTAGGC < 3:279236/147‑1 TTGCGCTGATCTTCACCCCGGCGCTCTGCGCAACCATGCTCAAACCGCTGAAGAAGGGCGAGCACCACACCGCCAAAGGTGGCTTCTTCGGCTGGTTCAACCGCAACTTCGACCGCAGCGTCAACGGCTACGAGCGCAGTGTAGGCGCC < 8:6487/149‑1 GCTGATCTTCACCCCGGCGCTCTGCGCAACCATGCTCAAACCGCTGAAGAAGGGCGAGCACCACACCGCCAAAGGTGGCTTCTTCGGCTGGTTCAACCGCAACTTCGACCGCAGCGTCAACGGCTACGAGCGCAGTGTAGGCGCCATCT > 3:170292/1‑149 GCCAGCAGGAATGGCACCTTGTTGCGCAAGATGGCGCCTACACTGCGCTCGTAGCCGTTGACGCTGCGGTCGAAGTTGCGGTTGAACCAGCCGAAGAAGCCACCTTTGGCGGTGTGGTGCTCGCCCTTCTTCAGCGGTTTGAGCATGGTTGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1579766‑1579919‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggttgcgcTGATCTTCACCCCGGCGCTCTGCGCAACCATGCTCAAACCGCTGAAGAAGGGCGAGCACCACACCGCCAAAGGTGGCTTCTTCGGCTGGTTCAACCGCAACTTCGACCGCAGCGTCAACGGCTACGAGCGCAGTGTAGGCGCCATCT < NC_002947/1579940‑1579794 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |