New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1579919	47 (0.830)	4 (0.080)	4/242	NT	8.3%	coding (1478/3153 nt)	ttgB	efflux pump membrane protein TtgB
	?	NC_002947	= 1579940	45 (0.850)					coding (1457/3153 nt)	ttgB	efflux pump membrane protein TtgB

AGATGGCGCCTACACTGCGCTCGTAGCCGTTGACGCTGCGGTCGAAGTTGCGGTTGAACCAGCCGAAGAAGCCACCTTTGGCGGTGTGGTGCTCGCCCTTCTTCAGCGGTTTGAGCATGGTTGCGCAGAGCGCCGGGGTGAAGATCAGCGCAACCAGCACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGAT  >  NC_002947/1579794‑1580085                                                                                                                                                   |                                                                                                                                                  aGATGGCGCCTACACTGCGCTCGTAGCCGTTGACGCTGCGGTCGAAGTTGCGGTTGAACCAGCCGAAGAAGCCACCTTTGGCGGTGTGGTGCTCGCCCTTCTTCAGCGGTTTGAGCATGGTTGCGCAGAGCGCCGGGGTGAAGATCAgc                                                                                                                                                 >  3:170292‑M2/1‑147 (MQ=255)     ggCGCCTACACTGCGCTCGTAGCCGTTGACGCTGCGGTCGAAGTTGCGGTTGAACCAGCCGAAGAAGCCACCTTTGGCGGTGTGGTGCTCGCCCTTCTTCAGCGGTTTGAGCATGGTTGCGCAGAGCGCCGGGGTGAAGATCAgcgcaa                                                                                                                                             <  8:6487‑M2/149‑7 (MQ=255)        gcCTACACTGCGCTCGTAGCCGTTGACGCTGCGGTCGAAGTTGCGGTTGAACCAGCCGAAGAAGCCACCTTTGGCGGTGTGGTGCTCGCCCTTCTTCAGCGGTTTGAGCAAGGTTGCGCAGAGCGCCGGGGTGAAGATCAgcgcaac                                                                                                                                            <  3:279236‑M2/147‑8 (MQ=255)         ccTACACTGCGCTCGTAGCCGTTGACGCTGCGGTCGAAGTTGCGGTTGAACCAGCCGAAGAAGCCACCTTTGGCGGTGTGGTGCTCGCCCTTCTTCAGCGGTTTGAGCATGGTAGCGCAGAGCGCCGGGGTGAAGATCAGCGCAACCAg                                                                                                                                         >  4:283746/1‑149 (MQ=255)           tACACTGCGCTCGTAGCCGTTGACGCTGCGGTCGAAGTTGCGGTTGAACCAGCCGAAGAAGCCACCTTTGGCGGTGTGGTGCTCGCCCTTCTTCAGCGGTTTGAGCATGGTTGCGCAGAGCGCCGGGGTGAAGATCa                                                                                                                                                   >  4:253398/1‑137 (MQ=255)           tACACTGCGCTCGTAGCCGTTGACGCTGCGGTCGAAGTTGCGGTTGAACCAGCCGAAGAAGCCACCTTTGGCGGTGTGGTGCTCGCCCTTCTTCAGCGGTTTGAGCATGGTTGCGCAGAGCGCCGGGGTGAAGATCa                                                                                                                                                   <  3:253398/137‑1 (MQ=255)                tGCGCTCGTAGCCGTTGACGCTGCGGTCGAAGTTGCGGTTGAACCAGCCGAAGAAGCCACCTTTGGCGGTGTGGTGCTCGCCCTTCTTCAGCGGTTTGAGCATGGTTGCGCAGAGCGCCGGGGTGAAGATCAGCGCAACCAGCACCGa                                                                                                                                   >  1:280121/1‑148 (MQ=255)                tGCGCTCGTAGCCGTTGACGCTGCGGTCGAAGTTGCGGTTGAACCAGCCGAAGAAGCCACCTTTGGCGGTGTGGTGCTCGCCCTTCTTCAGCGGTTTGAGCATGGTTGCGCAGAGCGCCGGGGTGAAGATCAGCGCAACCAGCACCGa                                                                                                                                   >  2:297697/1‑148 (MQ=255)                        tAGCCGTTGACGCTGCGGTCGAAGTTGCGGTTGAACCAGCCGAAGAAGCCACCTTTGGCGGTGTGGTGCTCGCCCTTCTTCAGCGGTTTGAGCATGGTTGCGCAGAGCGCCGGGGTGAAGATCAGCGCAACCAGCACCGACAGGCCCAt                                                                                                                          <  1:362431/149‑1 (MQ=255)                        tAGCCGTTGACGCTGCGGTCGAAGTTGCGGTTGAACCAGCCGAAGAAGCCACCTTTGGCGGTGTGGTGCTCGCCCTTCTTCAGCGGTTTGAGCATGGTTGCGCAGAGCGCCGGGGTGAAGATCAGCGCAACCAGCACCGACAGGCCCAt                                                                                                                          >  1:46186/1‑149 (MQ=255)                            cGTTGACGCTGCGGTCGAAGTTGCGGTTGAACCAGCCGAAGAAGCCACCTTTGGCGGTGTGGTGCTCGCCCTTCTTCAGCGGTTTGAGCATGGTTGCGCAGAGCGCCGGGGTGAAGATCAGCGCAACCAGCACCGACAGGCCCATGGcc                                                                                                                      <  2:46186/149‑1 (MQ=255)                            cGTTGACGCTGCGGTCGAAGTTGCGGTTGAACCAGCCGAAGAAGCCACCTTTGGCGGTGTGGTGCTCGCCCTTCTTCAGCGGTTTGAGCATGGTTGCGCAGAGCGCCGGGGTGAAGATCAGCGCAACCAGCACCGACAGGCCCATGGc                                                                                                                       <  3:44310/148‑1 (MQ=255)                             gTTGACGCTGCGGTCGAAGTTGCGGTTGAACCAGCCGAAGAAGCCACCTTTGGCGGTGTGGTGCTCGCCCTTCTTCAGCGGTTTGAGCATGGTTGCGCAGAGCGCCGGGGTGAAGATCAGCGCAACCAGCACCGACAGGCCCATGGCCg                                                                                                                     <  3:283746/149‑1 (MQ=255)                              ttGACGCTGCGGTCGAAGTTGCGGTTGAACCAGCCGAAGAAGCCACCTTTGGCGGTGTGGTGCTCGCCCTTCTTCAGCGGTTTGAGCATGGTTGCGCAGAGCGCCGGGGTGAAGATCAGCGCAACCAGCACCGACAGGCCCATGGCCga                                                                                                                    <  4:158080/149‑1 (MQ=255)                                   gCTGCGGTCGAAGTTGCGGTTGAACCAGCCGAAGAAGCCACCTTTGGCGGTGTGGTGCTCGCCCTTCTTCAGCGGTTTGAGCATGGTTGCGCAGAGCGCCGGGGTGAAGATCAGCGCAACCAGCACCGACAGGCCCATGGCCGAGACGa                                                                                                               <  1:342577/149‑1 (MQ=255)                                   gCTGCGGTCGAAGTTGCGGTTGAACCAGCCGAAGAAGCCACCTTTGGCGGTGTGGTGCTCGCCCTTCTTCAGCGGTTTGAGCATGGTTGCGCAGAGCGCCGGGGTGAAGATCAGCGCAACCAGCACCGACAGGCCCATGGCCGAGACGa                                                                                                               <  1:322777/149‑1 (MQ=255)                                     tGCGGTCGAAGTTGCGGTTGAACCAGCCGAAGAAGCCACCTTTGGCGATGTGGTGCTCGCCCTTCTTCAGCGGTTTGAGCATGGTTGCGCAGAGCGCCGGGGTGAAGATCAGCGCAACCAGCACCGACAGGCCCATGGCCGAGACGATg                                                                                                             >  1:266971/1‑149 (MQ=255)                                                    ggTTGAACCAGCCGAAGAAGCCACCTTTGGCGGTGTGGTGCTCGCCCTTCTTCAGCGGTTTGAGCATGGTTGCGCAGAGCGCCGGGGTGAAGATCAGCGCAACCAGCACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGc                                                                                              <  2:280121/149‑1 (MQ=255)                                                    ggTTGAACCAGCCGAAGAAGCCACCTTTGGCGGTGTGGTGCTCGCCCTTCTTCAGCGGTTTGAGCATGGTTGCGCAGAGCGCCGGGGTGAAGATCAGCGCAACCAGCACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGc                                                                                              <  7:6487/149‑1 (MQ=255)                                                    ggTTGAACCAGCCGAAGAAGCCACCTTTGGCGGTGTGGTGCTCGCCCTTCTTCAGCGGTTTGAGCATGGTTGCGCAGAGCGCCGGGGTGAAGATCAGCGCAACCAGCACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGc                                                                                              <  4:283667/149‑1 (MQ=255)                                                     gTTGAACCAGCCGAAGAAGCCACCTTTGGCGGTGTGGTGCTCGCCCTTCTTCAGCGGTTTGAGCATGGTTGCGCAGAGCGCCGGGGTGAAGATCAGCGCAACCAGCACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGcc                                                                                             >  1:148877/1‑149 (MQ=255)                                                          aCCAGCCGAAGAAGCCACCTTTGGCGGTGTGGTGCTCGCCCTTCTTCAGCGGTTTGAGCATGGTTGCGCAGAGCGCCGGGGTGAAGATCAGCGCAACCAGCACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGCCgg                                                                                           >  6:333111/1‑146 (MQ=255)                                                           ccAGCCGAAGAAGCCACCTTTGGCGGTGTGGTGCTCGCCCTTCTTCAGCGGTTTGAGCATGGTTGCGCAGAGCGCCGGGGTGAAGATCAGCGCAACCAGCACCGACAGGCCCATGGc                                                                                                                       <  4:77203/117‑1 (MQ=255)                                                           ccAGCCGAAGAAGCCACCTTTGGCGGTGTGGTGCTCGCCCTTCTTCAGCGGTTTGAGCATGGTTGCGCAGAGCGCCGGGGTGAAGATCAGCGCAACCAGCACCGACAGGCCCATGGc                                                                                                                       >  3:77203/1‑117 (MQ=255)                                                           ccAGCCGAAGAAGCCACCTTTGGCGGTGTGGTGCTCGCCCTTCTTCAGCGGTTTGAGCATGGTTGCGCAGAGCGCCGGGGTGAAGATCAGCGCAACCAGCACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGCCgg                                                                                           >  2:183592/1‑145 (MQ=255)                                                              gCCGAAGAAGCCACCTTTGGCGGTGTGGTGCTCGCCCTTCTTCAGCGGTTTGAGCATGGTTGCGCAGAGCGCCGGGGTGAAGATCAGCGCAACCAGCACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGCCGGTAGATca                                                                                    <  4:279236/149‑1 (MQ=255)                                                                  aagaagCCACCTTTGGCGGTGTGGTGCTCGCCCTTCTTCAGCGGTTTGAGCATGGTTGCGCAGAGCGCCGGGGTGAAGATCAGCGCAACCAGCACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACAcc                                                                                >  3:187912/1‑149 (MQ=255)                                                                         cACCTTTGGCGGTGTGGTGCTCGCCCTTCTTCAGCGGTTTGAGCATGGTTGCGCAGAGCGCCGGGGTGAAGATCAGCGCAACCAGCACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAg                                                                         >  3:139063/1‑149 (MQ=255)                                                                                        ggtgCTCGCCCTTCTTCAGCGGTTTGAGCATGGTTGCGCAGAGCGCCGGGGTGAAGATCAGCGCAACCAGCACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGc                                                           >  6:295395/1‑148 (MQ=255)                                                                                         gtgCTCGCCCTTCTTCAGCGGTTTGAGCATGGTTGCGCAGAGCGCCGGGGTGAAGATCAGCGCAACCAGCACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCa                                                         <  2:266971/149‑1 (MQ=255)                                                                                                  cttcttCAGCGGTTTGAGCATGGTTGCGCAGAGCGCCGGGGTGAAGATCAGCGCAACCAGCACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGgcag                                                  >  4:232857/1‑147 (MQ=255)                                                                                                          gCGGTTTGAGCATGGTTGCGCAGAGCGCCGGGGTGAAGATCAGCGCAACCAGCACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGcc                                        >  5:151452/1‑149 (MQ=255)                                                                                                              tttGAGCATGGTTGCGCAGAGCGCCGGGGTGAAGATCAGCGCAACCAGCACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGACCGCCATGGGCAGCAGTACGGCCga                                      >  8:66527/1‑147 (MQ=255)                                                                                                                 gAGCATGGTTGCGCAGAGCGCCGGGGTGAAGATCAgcgcaaccatgctcaaaccgctgaagaagggcgagcaccacaccgccaaaggtggcttcttcggctggttcaaccgcaacttcgaccgcagcgtcaacggctacgagcgcagtg                                 <  4:39236‑M2/149‑115 (MQ=255)                                                                                                                  aGCATGGTTGCGCAGAGCGCCGGGGTGAAGATCAGCGCAACCAGCACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCaaa                                                                 >  2:62115/1‑116 (MQ=255)                                                                                                                   gCATGGTTGCGCAGAGCGCCGGGGTGAAGATCAGCGCAACCAGCACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCAc                                >  8:25563/1‑148 (MQ=255)                                                                                                                    cATGGTTGCGCAGAGCGCCGGGGTGAAGATCAgcgcaaccatgctcaaaccgctgaagaagggcgagcaccacaccgccaaaggtggcttcttcggctggttcaac                                                                         >  5:150441‑M2/1‑32 (MQ=255)                                                                                                                    cATGGTTGCGCAGAGCGCCGGGGTGAAGATCAgcgcaaccatgctcaaaccgctgaagaagggcgagcaccacaccgccaaaggtggcttcttcggctggttcaac                                                                         <  6:150441‑M2/106‑75 (MQ=255)                                                                                                                    cATGGTTGCGCAGAGCGCCGGGGTGAAGATCAGCGCAACCAGCACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTg                                                                            >  7:144848/1‑103 (MQ=255)                                                                                                                    cATGGTTGCGCAGAGCGCCGGGGTGAAGATCAGCGCAACCAGCACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTg                                                                            <  8:144848/103‑1 (MQ=255)                                                                                                                     aTGGTTGCGCAGAGCGCCGGGGTGAAGATCAGCGCAACCAGCACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGCCgg                                                                                           >  5:111125/1‑87 (MQ=255)                                                                                                                     aTGGTTGCGCAGAGCGCCGGGGTGAAGATCAGCGCAACCAGCACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGCCgg                                                                                           <  6:111125/87‑1 (MQ=255)                                                                                                                       ggTTGCGCAGAGCGCCGGGGTGAAGATCAGCGCAACCAGCACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCga                                      <  1:186681/138‑1 (MQ=255)                                                                                                                       ggTTGCGCAGAGCGCCGGGGTGAAGATCAGCGCAACCAGCACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCga                                      >  2:186681/1‑138 (MQ=255)                                                                                                                       ggTTGCGCAGAGCGCCGGGGTGAAGATCAGCGCAACCAGCACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGCAGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAggg                           >  2:243394/1‑149 (MQ=255)                                                                                                                        gTTGCGCAGAGCGCCGGGGTGAAGATCAgcgcaaccatgctcaaaccgctgaagaagggcgagcaccacaccgccaaaggtggcttcttcggctggttcaaccgcaacttcgaccgcagcgtcaacggctacgagcgcagtgtaggcgc                          <  8:232861‑M2/149‑122 (MQ=255)                                                                                                                        gTTGCGCAGAGCGCCGGGGTGAAGATCAGCGCAACCAGCACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAggg                           <  5:333111/148‑1 (MQ=255)                                                                                                                        gTTGCGCAGAGCGCCGGGGTGAAGATCAGCGCAACCAGCACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGc                          <  1:183592/149‑1 (MQ=255)                                                                                                                           gcgcAGAGCGCCGGGGTGAAGATCAGCGCAACCAGCACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGa                        <  2:148877/148‑1 (MQ=255)                                                                                                                               agagCGCCGGGGTGAAGATCAGCGCAACCAGCACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATAccc                   <  6:151452/149‑1 (MQ=255)                                                                                                                                        gggTGAAGATCAGCGCAACCAGCACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGgcg          >  8:107402/1‑149 (MQ=255)                                                                                                                                         ggTGAAGATCAGCGCAACCAGCACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGCCTGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGgcgc         <  5:295395/149‑1 (MQ=255)                                                                                                                                          gTGAAGATCAGCGCAACCAGCACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCAcc                               <  1:321514/126‑1 (MQ=255)                                                                                                                                          gTGAAGATCAGCGCAACCAGCACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCAcc                               >  2:321514/1‑126 (MQ=255)                                                                                                                                             aaGATCAGCGCAACCAGCACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTg     >  2:225320/1‑149 (MQ=255)                                                                                                                                                aTCAGCGCAACCAGCACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATAACCACCAGGGCGCCCTGGAt  >  8:244061/1‑149 (MQ=255)                                                                                                                                                  cAGCGCAACCAGCACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGAt  >  6:262792/1‑147 (MQ=255)                                                                                                                                                  cAGCGCAACCAGCACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGAt  <  5:262792/147‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                  AGATGGCGCCTACACTGCGCTCGTAGCCGTTGACGCTGCGGTCGAAGTTGCGGTTGAACCAGCCGAAGAAGCCACCTTTGGCGGTGTGGTGCTCGCCCTTCTTCAGCGGTTTGAGCATGGTTGCGCAGAGCGCCGGGGTGAAGATCAGCGCAACCAGCACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGAT  >  NC_002947/1579794‑1580085

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.