| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1591794 | 60 (1.060) | 4 (0.070) | 4/246 | NT | 6.5% | coding (100/921 nt) | PP_1395 | AraC family transcriptional regulator |
| ? | NC_002947 | = 1591834 | 58 (1.080) | coding (60/921 nt) | PP_1395 | AraC family transcriptional regulator | |||||
CATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1591642‑1591794‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccgaGCTGATCAACCGCCATGCGGGCGAGCCCTTTGGTCCAGCATCGGCCATCGATGACCTGTACCTGGTGCGTTACACCGAAAATGTACGTTCTGTACCCACCCTGGCGCAGCCTGCCCTGTGCATCCTTGCCCAGGGCAGCAAAAG < NC_002947/1591834‑1591691 CATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGG < 4:214879/149‑1 attTAATGCAGTTGGTCGTAGGCGTACTGCTCGTCACCCATGAACAGGCTTTTGCTGCCCTTGGCAAGGATTCACAGGTTAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGC < 4:349265/146‑1 TACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGAGCTGATCAACCGCCATGCGGG > 6:46484/1‑149 GTCACCCAGGAACAGGCTTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCC > 2:263378/1‑118 TTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGAGCTGATCAACCGCCATGCGGGCGAGCCCTTTGGTCCAGCATCGGCCA < 5:213115/148‑1 CTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGAGCTGATCAACCGCCATGCGGGCGAGCCCTTTGGTCCAGCATCGGCCATCGA < 2:15201/149‑1 TGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGAGCTGATCAACCGCCATGCGGGCGAGCCCTTTGGTCCAGCATCGGCCATCGAT < 5:46484/149‑1 GCCGAGCTGATCAACCGCCATGCGGGCGAGCCCTTTGGTCCAGCATCGGCCATCGATGACCTGTACCTGGTGCGTTACACCGAAAATGTACGTTCTGTACCCACCCTGGCGCAGCCTGCCCTGTGCATCCTTGCCCAGGGCAGCAAAAG < 7:175070/149‑1 CATGTAATGCAGTGGGTCGTAGGCGTACTGCTCGTCACCCAGGAACAGGCTTTTGCTGCCCTGGGCAAGGATGCACAGGGCAGGCTGCGCCAGGGTGGGTACAGAACGTACATTTTCGGTGTAACGCACCAGGTACAGGTCATCGATGGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1591642‑1591794‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccgaGCTGATCAACCGCCATGCGGGCGAGCCCTTTGGTCCAGCATCGGCCATCGATGACCTGTACCTGGTGCGTTACACCGAAAATGTACGTTCTGTACCCACCCTGGCGCAGCCTGCCCTGTGCATCCTTGCCCAGGGCAGCAAAAG < NC_002947/1591834‑1591691 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |