| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1686020 = | 53 (0.940) | 4 (0.080) | 4/242 | NT | 8.1% | coding (759/1425 nt) | patD | medium chain aldehyde dehydrogenase |
| ? | NC_002947 | 1686099 = | 42 (0.800) | coding (680/1425 nt) | patD | medium chain aldehyde dehydrogenase | |||||
GCCGCGGCCAGACGGTCGGCAACCCGTTGATAACCCACCCCAAGGTGCGCATGGTGTCGCTGACCGGCTCGATCCCCACCGGCGCGCACATCATCAGCGCCACCGCCGACAGCGTGAAACGCATGCACATGGAGCTGGGCGGCAAGGCGCCGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1686174‑1686020‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccggtgGGGATCGAGCCGGTCAGCGACACCATGCGCACCTTGGGGTGGGTTATCAACGGGTTGCCGACCGTCTGGCCGCGGCCGAAGAGAATGTTCAGCACCCCCGGCGGCAGCAAGTCCTGGGCCAGCTCGCCCAGGCGCAGGGCCGTCAGC > NC_002947/1686099‑1686245 GCCGCGGCCAGACGGTCGGCAACCCGTTGATAACCCACCCCAAGGTGCGCATGGTGTCGCTGACCGGCTCGATCCCCACCGGCGCGCACATCATCAGCGCCACCGCCGACAGCGTGAAACGCATGCACATGGAGCTGGGCGGCAAGGCG > 8:214775/1‑149 CCGCGGCCAGACGGTCGGCAACCCGTTGATAACCCACCCCAAGGTGCGCATGGTGTCGCTGCCCGGCTCGATCCCCACCGGCGCGCACATCATCAGCGCCACCGCCGACAGCGTGAAACGCATGCACATGGAGCTGGGCGGCAAGGCGC > 7:197151/1‑149 CCGCGGCCAGACGGTCGGCAACCCGTTGATAACCCACCCCAAGGTGCGCATGGTGTCGCTGACCGGCTCGATCCCCACCGGCGCGCACATCATCAGCGCCACCGCCGACAGCGTGAAACGCATGCACATGGAGCTGGGCGGCAAGGCGC > 6:84834/1‑149 CGGCCAGACGGTCGGCAACCCGTTGATAACCCACCCCAAGGTGCGCATGGTGTCGCTGACCGGCTCGATCCCCACCGGCGCGCACATCATCAGCGCCACCGCCGACAGCGTGAAACGCATGCACATGGAGCTGGGCGGCAAGGCGCCGG < 5:84834/149‑1 CCCACCCCAAGGTGCGCATGGTGTCGCTGACCGGCTCGATCCCCACCGGCGCGCACATCATCAGCGCCACCGCCGACAGCGTGAAACGCATGCACATGGAGCTGGGCGGCAAGGCGC > 5:360091/1‑117 CCCACCCCAAGGTGCGCATGGTGTCGCTGACCGGCTCGATCCCCACCGGCGCGCACATCATCAGCGCCACCGCCGACAGCGTGAAACGCATGCACATGGAGCTGGGCGGCAAGGCGC < 6:360091/117‑1 CCCACCGGCGCGCACATCATCAGCGCCACCGCCGACAGCGTGAAACGCATGCACATGGAGCTGGGCGGCAAGGCGCCGGTGGGGATCGAGCCGGTCAGCGACACCATGCACACCTTGGGGTGGGTTATCAACGGGTTGCCGACCGTCTG > 7:42533/1‑149 CACCGGCGCGCACATCATCAGCGCCACCGCCGACAGCGTGAAACGCATGCACATGGAGCTGGGCGGCAAGGCGCCGGTGGGGATCGAGCCGGTCAGCGACACCATGCGCACCTTGGGGTGGGTTATCAACGGGTTGCCGA > 3:178693/1‑140 CACCGGCGCGCACATCATCAGCGCCACCGCCGACAGCGTGAAACGCATGCACATGGAGCTGGGCGGCAAGGCGCCGGTGGGGATCGAGCCGGTCAGCGACACCATGCGCACCTTGGGGTGGGTTATCAACGGGTTGCCGA < 4:178693/140‑1 AGCGCCACCGCCGACAGCGTGAAACGCATGCACATGGAGCTGGGCGGCAAGGCGCCGGTGGGGATCGAGCCGGTCAGCGACACCATGCACACCTTGGGGTGGGTTATCAACGGGTTGCCGACCGTCTGGCCGCGGCCGAAGAGAATGTT < 8:42533/149‑1 TGGGGATCGAGCCGGTCAGCGACACCATGCGCACCTTGGGGTGGGTTATCAACGGGTTGCCGACCGTCTGGCCGCGGCCGAAGAGAATGTTCAGCACCCCCGGCGGCAGCAAGTCCTGGGCCAGCTCGCCCAGGCGCAGGGCCGTCAGC < 5:234206/149‑1 GCCGCGGCCAGACGGTCGGCAACCCGTTGATAACCCACCCCAAGGTGCGCATGGTGTCGCTGACCGGCTCGATCCCCACCGGCGCGCACATCATCAGCGCCACCGCCGACAGCGTGAAACGCATGCACATGGAGCTGGGCGGCAAGGCGCCGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1686174‑1686020‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccggtgGGGATCGAGCCGGTCAGCGACACCATGCGCACCTTGGGGTGGGTTATCAACGGGTTGCCGACCGTCTGGCCGCGGCCGAAGAGAATGTTCAGCACCCCCGGCGGCAGCAAGTCCTGGGCCAGCTCGCCCAGGCGCAGGGCCGTCAGC > NC_002947/1686099‑1686245 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |