| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2344137 = | 84 (1.480) | 5 (0.100) | 5/240 | NT | 5.8% | coding (169/456 nt) | soxR | DNA‑binding transcriptional regulator |
| ? | NC_002947 | 2344209 = | 86 (1.640) | coding (97/456 nt) | soxR | DNA‑binding transcriptional regulator | |||||
ACACACGGATGCTCACAGTGGGTGAAGTGGCCAAGCGCAGCGGCGTGGCGGTGTCTGCGCTGCACTTCTACGAAACCAAGGGGCTGATCGCCAGCGTCCGCACGGCTGGCAACCAGCGCCGCTATCCCTCGCTGGTGCTGCGTACCCTGGCGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2344292‑2344137‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcgatcaGCCCCTTGGTTTCGTAGAAGTGCAGCGCAGACACCGCCACGCCGCTGCGCTTGGCCACTTCACCCACTGTGAGCATCCGTGTGTTGTCCGCTGCCATATATGTTCGACCTAAAGTTAAGTTGAGCTTTTATAAGCCGGCCCGGTCGG > NC_002947/2344209‑2344355 ACACACGGATGCTCACAGTGGGTGAAGTGGCCAAGCGCAGCGGCGTGGCGGTGTCTGCGCTGCACTTCTACGAAACCAAGGGGCTGATCGCCAGCGTCCGCACGGCTGGCAACCAGCGCCGCTATCCCTCGCTGGTGCTGCGTACCCTG < 2:150580/149‑1 ctCACGGATGCTCACAGTGGGTGAAGTGGCCAAGCGCAGCGGCGTGGCGGTGTCTGCGCTGCACTTCTACGAAACCAAGGGGCTGATCGCCAGCGTCCGCACGGCTGGCAACCAGCGCCGCTATCCCTCGCTGGTGCTGCGTACCCTGG < 4:666/147‑1 ACACGGATGCTCACAGTGGGTGAAGTGGCCAAGCGCAGCGGCGTGGCGGTGTCTGCGCTGCACTTCTACGAAACCAAGGGGCTGATCGCCAGCGTCCGCACGGCTGGCAACCAGCGCCGCTATCCCTCGCTGGTGCTGCGTACCCTGGC > 1:171149/1‑149 ACACGGATGCTCACAGTGGGTGAAGTGGCCAAGCGCAGCGGCGTGGCGGTGTCTGCGCTGCACTTCTACGAAACCAAGGGGCTGATCGCCAGCGTCCGCACGGCTGGCAACCAGCGCCGCTATCCCTCGCTGGTGCTGCGTACCCTGGC > 3:225588/1‑149 ACACGGATGCTCACAGTGGGTGAAGTGGCCAAGCGCAGCGGCGTGGCGGTGTCTGCGCTGCACTTCTACGAAACCAAGGGGCTGATCGCCAGCGTCCGCACGGCTGGCAACCAGCGCCGCTATCCCTCGCTGGTGCTGCGTACCCTGGC > 5:46630/1‑149 GGATGCTCACAGTGGGTGAAGTGGCCAAGCGCAGCGGCGTGGCGGTGTCTGCGCTGCACTTCTACGAAACCAAGGGGCTGATCGCCAGCGTCCGCACGGCTGGCAACCAGCGCCGCTATCCCTCGCTGGTGCTGCGTACCCTGGCGATC < 8:226135/149‑1 GGATGCTCACAGTGGGTGAAGTGGCCAAGCGCAGCGGCGTGGCGGTGTCTGCGCTGCACTTCTACGAAACCAAGGGGCTGATCGCCAGCGTCCGCACGGCTGGCAACCAGCGCCGCTATCCCTCGCTGGTGCTGCGTACCCTGGCGATC < 6:187026/149‑1 TCACAGTGGGTGAAGTGGCCAAGCGCAGCGGCGTGTCGGTGTCTGCGCTGCACTTCTACGAAACCAAGGGGCTGATCGCCAGCGTCCGCACGGCTGGCAACCAGCGCCGCTATCCCTCGCTGGTGCTGCGTACCCTGG < 6:172629/138‑1 TCACAGTGGGTGAAGTGGCCAAGCGCAGCGGCGTGGCGGTGTCTGCGCTGCACTTCTACGAAACCAAGGGGCTGATCGCCAGCGTCCGCACGGCTGGCAACCAGCGCAGCTATCCCTCGCTGGTGCTGCGTACCCTGG > 5:172629/1‑138 GTGGCCAAGCGCAGCGGCGTGGCGGTGTCTGCGCTGCACTTCTACGAAACCAAGGGGCTGATCGCCAGCGTCCGCACGGCTGGCAACCAGCGCCGCTATCCCTCGCTGGTGCTGCGTACCCTG < 4:293564/123‑1 GTGGCCAAGCGCAGCGGCGTGGCGGTGTCTGCGCTGCACTTCTACGAAACCAAGGGGCTGATCGCCAGCGTCCGCACGGCTGGCAACCAGCGCCGCTATCCCTCGCTGGTGCTGCGTACCCTG > 3:293564/1‑123 GCGGTGTCTGCGCTGCACTTCTACGAAACCAAGGGGCTGATCGCCAGCGTCCGCACGGCTGGCAACCAGCGCCGCTATCCCTCGCTGGTGCTGCGTACCCTGGC < 5:368921/104‑1 GCGGTGTCTGCGCTGCACTTCTACGAAACCAAGGGGCTGATCGCCAGCGTCCGCACGGCTGGCAACCAGCGCCGCTATCCCTCGCTGGTGCTGCGTACCCTGGC > 6:368921/1‑104 GCTGATCGCCAGCGTCCGCACGGCTGGCAACCAGCGCCGCTATCCCTCGCTGGTGCTGCGTACCCTGGCGATCAGCCCCTTGGTTTCGTAGAAGTGCAGCGCAGACACCGCCACGCCGCTGCGCTTGGCCACTTCACCCACTGTGAGCA > 6:38357/1‑149 CTGATCGCCAGCGTCCGCACGGCTGGCAACCAGCGCCGCTATCCCTCGCTGGTGCTGCGTACCCTGGCGATCAGCCCCTTGGTTTCGTAGAAGTGCAGCGCAGACACCGCCACGCCGCTGCGCTTGGCCACTTCACCCGCTGTGAGCAT > 6:63110/1‑149 GATCGCCAGCGTCCGCACGGCTGGCAACCAGCGCCGCTATCCCTCGCTGGTGCTGCGTACCCTGGCGATCAGCACCTTGGTTTCGTAGAAGTGCAGCGCAGACACCGCCACGCCGCTGCGCTTGGCCACTTCACCCACTGTGAGCATCC > 5:265015/1‑149 ATCGCCAGCGTCCGCACGGCTGGCAACCAGCGCCGCTATCCCTCGCTGGTGCTGCGTACCCTGGCGATCAGCCCCTTGGTTTCGTAGAAGTGCAGCGCAGACACCGCCACGCCGCTGCGCTTGGCCACTTCACCCACTGTGAGCATCCG > 3:284605/1‑149 CTGCGTACCCTGGCGATCAGCCCCTTGGTTTCGTAGAAGTGCAGCGCAGACACCGCCACGCCGCTGCGCTTGGCCACTTCACCCACTGTGAGCATCCGTGTGTTGTCCGCTGCCATATATGTTCGACCTAAAGTTAAGTTGAGCTTTTA < 6:265015/149‑1 TGGCGATCAGCCCCTTGGTTTCGTAGAAGTGCAGCGCAGACACCGCCACGCCGCTGCGCTTGGCCACTTCACCCACTGTGAGCATCCGTGTGTTGTCCGCTGCCATATATGTTCGACCTAAAGTTAAGTTGAGCTTTTATAAGCCG > 8:251535/1‑146 TGGCGATCAGCCCCTTGGTTTCGTAGAAGTGCAGCGCAGACACCGCCACGCCGCTGCGCTTGGCCACTTCACCCACTGTGAGCATCCGTGTGTTGTCCGCTGCCATATATGTTCGACCTAAAGTTAAGTTGAGCTTTTATAAGCCG < 7:251535/146‑1 GCGATCAGCCCCTAGGTTTCGTAGAAGTGCAGCGCAGACACCGCCACGCCGCTGCGCTTGGCCACTTCACCCACTGTGAGCATCCGTGTGTTGTCCGCTGCCATATATGTTCGACCTAAAGTTAAGTTGCGCTTTTATTAGCCGtcagg > 6:251021/1‑144 GATCAGCCCCTTGGTTTCGTAGAAGTGCAGCGCAGACACCGCCACGCCGCTGCGCTTGGCCACTTCACCCACTGTGAGCATCCGTGTGTTGTCCGCTGCCATATATGTTCGACCTAAAGTTAAGTTGAGCTTTTATAAGCCGGCCCGGT > 1:223166/1‑149 ATCAGCCCCTTGGTTTCGTAGAAGTGCAGCGCAGACACCGCCACGCCGCTGCGCTTGGCCACTTCACCCACTGTGAGCATCCGTGTGTTGTCCGCTGCCATATATGTTCGACCTAAAGTTAAGTTGAGCTTTTATAAGCCGGCCCGGTC < 2:223166/149‑1 CAGCCCCTTGGTTTCGTAGAAGTGCAGCGCAGACACCGCCACGCCGCTGCGCTTGGCCACTTCACCCACTGTGAGCATCCGTGTGTTGTCCGCTGCCATATATGTTCGACCTAAAGTTAAGTTGAGCTTTTATAAGCCGGCCCGGTCGG > 2:11738/1‑149 ACACACGGATGCTCACAGTGGGTGAAGTGGCCAAGCGCAGCGGCGTGGCGGTGTCTGCGCTGCACTTCTACGAAACCAAGGGGCTGATCGCCAGCGTCCGCACGGCTGGCAACCAGCGCCGCTATCCCTCGCTGGTGCTGCGTACCCTGGCGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2344292‑2344137‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcgatcaGCCCCTTGGTTTCGTAGAAGTGCAGCGCAGACACCGCCACGCCGCTGCGCTTGGCCACTTCACCCACTGTGAGCATCCGTGTGTTGTCCGCTGCCATATATGTTCGACCTAAAGTTAAGTTGAGCTTTTATAAGCCGGCCCGGTCGG > NC_002947/2344209‑2344355 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |