New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2615294	45 (0.790)	4 (0.070)	4/250	NT	8.3%	coding (4233/4710 nt)	PP_2287	internal core protein
	?	NC_002947	= 2615347	45 (0.830)					coding (4286/4710 nt)	PP_2287	internal core protein

AGGAGAACGACCTTAGCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCACCATG‑CACGGCTGGAACAAGTCCATGCTCTTCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2615182‑2615294 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgccAGGAATCCCCCGTGCAGGACAGTGGACAACGTGGCCCAGTCCCGGTGGTTCGCGGCGAAGAGCATGGACTTGTTCCAGCCGTGCATGGTGAAGGCCATGAACTGGAA  <  NC_002947/2615347‑2615241                                                                                                                                                                                                                               AGGAGAACGACCTTAGCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCACCATG‑CACGGCTGGAACAAGTCCATGCTCTTCGCCAGGAATCCCCCGTGCAGGACAGTGGACAACGTGGCC                                                                         >  4:1221/1‑149                           CCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCACCATG‑CACGGCTGGAACAAGTCCATGCTCTTCGCCAGGAATCCCCCGTGCAGGACAGTGGACAACGTGGCCCAGTCCCGGTGGTTCGCGGCGAAGA                                                <  3:1221/148‑1                               TCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCACCATGACACGGCTGGAACAAGTCCATGCTCTTCGCCAGGAATCCCCCGTGCAGCCCAGTGGACAACGTGGCCCAGTCCCGGGGGTGAGCGGCCAAGAGCAT                                            >  1:93312/1‑149                                                                      TGGCCTTCACCATG‑CACGTCTTGAACAAGTCCATGCTCTTCGCCATGAATCCCCCGTGCAGGACAGTGGACAACGTGGCCCAGTCCCGGTGGTTCGCGGCGAAGAGCATGGACTTGTTCCAGCCGTGCATGGTGAAGGCCATGAACTGG    <  2:93312/149‑1                                                                                                                  CAGGAATCCCCCGTGCAGGACAGTGGACAACGTGGCCCAGTCCCGGTGGTTCGCGGCGAAGAGCATGGACTTGTTCCAGCCGTGCATGGTGAAGGCCATGAACTGGAA  >  3:76749/1‑108                                                                                                                  CAGGAATCCCCCGTGCAGGACAGTGGACAACGTGGCCCAGTCCCGGTGGTTCGCGGCGAAGAGCATGGACTTGTTCCAGCCGTGCATGGTGAAGGCCATGAACTGGAA  <  4:76749/108‑1                                                                                                                                                                                                                               AGGAGAACGACCTTAGCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCACCATG‑CACGGCTGGAACAAGTCCATGCTCTTCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2615182‑2615294 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgccAGGAATCCCCCGTGCAGGACAGTGGACAACGTGGCCCAGTCCCGGTGGTTCGCGGCGAAGAGCATGGACTTGTTCCAGCCGTGCATGGTGAAGGCCATGAACTGGAA  <  NC_002947/2615347‑2615241

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.