New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2615294	45 (0.790)	4 (0.070)	4/250	NT	8.3%	coding (4233/4710 nt)	PP_2287	internal core protein
	?	NC_002947	= 2615347	45 (0.830)					coding (4286/4710 nt)	PP_2287	internal core protein

GATGCACCGTGAGTCTCGCCGTGTCATCCAGGAGAACGACCTTAGCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCAC‑CATG‑CACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATGCTGGATTCCATGGGGATGAATGAGGAGAACCGCCAGAAGTTCCTGGACCAGCGTATGGC  >  NC_002947/2615153‑2615437                                                                                                                                                |                                                                                                                                                gATGCACCGTGAGTCTCGCCGTGTCATCCAGGAGAACGACCTTAGCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCAC‑CATG‑CACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAac                                                                                                                                           >  1:17959/1‑148 (MQ=255) gATGCACCGTGAGTCTCGCCGTGTCATCCAGGAGAACGACCTTAGCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCAC‑CATG‑CACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAac                                                                                                                                           >  1:264151/1‑148 (MQ=255)         gTGAGTCTCGCCGTGTCATCCAGGAGAACGACCTTAGCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCAC‑CATG‑CACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGAc                                                                                                                                  >  7:37658/1‑149 (MQ=255)            aGTCTCGCCGTGTCATCCAGGAGAACGACCTTAGCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCAC‑CATG‑CACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTgg                                                                                                                               <  5:189998/149‑1 (MQ=255)                    cGTGTCATCCAGGAGAACGACCTTAGCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCAC‑CATG‑CACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCa                                                                                                                           <  4:56524/145‑1 (MQ=255)                    cGTGTCATCCAGGAGAACGACCTTAGCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCAC‑CATG‑CACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCa                                                                                                                           >  3:56524/1‑145 (MQ=255)                    cGTGTCATCCAGGAGAACGACCTTAGCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCAC‑CATG‑CACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGtt                                                                                                                       <  8:37658/149‑1 (MQ=255)                           tcgaGGAGAACGACCTTAGCTCCATGATTCCAGTCATGGGGACCGCACTAGGAAGAGCCATGTTCCAGTTCTTGGCCTTCAA‑CATG‑CACGGCTGGAGCAAGTCCAGGCTCTACGCGGCGAACCACCGGGCCTGGGCCACGTTGTccccg                                                                                                                >  8:184992/4‑146 (MQ=255)                              aGGAGAACGACCTTAGCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCAC‑CATG‑CACGGCTGGAACAAGTCCATGCTCTTCGCCaggaatcccccgtgcaggacagtggacaacgtggcc                                                                                                             >  4:1221‑M1/1‑113 (MQ=255)                              aGGAGAACGACCTTAGCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCAC‑CATG‑CACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCa                                                                                                                  >  5:233238/1‑144 (MQ=255)                              aGGAGAACGACCTTAGCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCAC‑CATG‑CACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCa                                                                                                                  <  6:233238/144‑1 (MQ=255)                              aGGAGAACGACCTTAGCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCAC‑CATG‑CACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTc                                                                                                             <  2:17959/149‑1 (MQ=255)                              aGGAGAACGACCTTAGCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCAC‑CATG‑CACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTc                                                                                                             <  2:264151/149‑1 (MQ=255)                               ggAGAACGACCTTAGCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCAC‑CATG‑CACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTcc                                                                                                            >  5:204745/1‑149 (MQ=255)                                        ccTTAGCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCAC‑CATG‑CACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGTGACTGGGCCACGTTGTCCACTGTCCTGCACgggg                                                                                                   <  2:119038/149‑1 (MQ=255)                                                 cATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCAC‑CATG‑CACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTgg                                                                                                                               <  1:345408/112‑1 (MQ=255)                                                 cATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCAC‑CATG‑CACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTgg                                                                                                                               >  2:345408/1‑112 (MQ=255)                                                        ccACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCAC‑CATG‑CACGGCTGGAACAAGTCCATGCTCTTCGCCaggaatcccccgtgcaggacagtggacaacgtggcccagtcccggtggttcgcggcgaaga                                                                                    <  3:1221‑M1/148‑62 (MQ=255)                                                         cACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCAC‑CATG‑CACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACgg                                                                                                     >  2:78738/1‑130 (MQ=255)                                                         cACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCAC‑CATG‑CACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACgg                                                                                                     <  1:78738/130‑1 (MQ=255)                                                         cACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCAC‑CATG‑CACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCt                                                                                   >  8:27759/1‑148 (MQ=255)                                                         cACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCAC‑CATG‑CACGGCTGGAACAAGTAAATGCTCTTCGCCGCGAACCACCGGGACTGGGCAACGTTTTCCACTGTCATGCACGGGGGATTCCTGACGAGCCt                                                                                   >  1:327240/1‑148 (MQ=255)                                                         cACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTCCAC‑CATG‑CTCGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCATGGGGGATTCCTGGCGAGCCt                                                                                   >  6:180443/1‑148 (MQ=255)                                                           cTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCAC‑CATG‑CACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGAc                                                                                <  6:204745/149‑1 (MQ=255)                                                            tCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCAC‑CATGACACGGCTGGAACAAGTCCATGCTCTTCGCCaggaatcccccgtgcagcccagtggacaacgtggcccagtcccgggggtgagcggccaagagcat                                                                                >  1:93312‑M1/1‑84 (MQ=255)                                                                         acTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCAC‑CATG‑CACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGaa                                                                  >  5:170046/1‑149 (MQ=255)                                                                         acTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCAC‑CATG‑CACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGaa                                                                  >  5:213976/1‑149 (MQ=255)                                                                           tAGGAAAAGCCATGTTCCAGTTCATGGCCTTCAC‑CATG‑CACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACgggg                                                                                                   >  1:37963/1‑114 (MQ=255)                                                                           tAGGAAAAGCCATGTTCCAGTTCATGGCCTTCAC‑CATG‑CACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACgggg                                                                                                   <  2:37963/114‑1 (MQ=255)                                                                            aGGAAAAGCCATGTTCCAGTTCATGGCCTTCAC‑CATG‑CACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGAc                                                                                <  7:253113/132‑1 (MQ=255)                                                                            aGGAAAAGCCATGTTCCAGTTCATGGCCTTCAC‑CATG‑CACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGAc                                                                                >  8:253113/1‑132 (MQ=255)                                                                             ggAAAAGCCATGTTCCAGTTCATGGCCTTCACTCATG‑CACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCa                                                               >  1:42520/1‑149 (MQ=255)                                                                             ggAAAAGCCATGTTCCAGTTCATGGCCTTCAC‑CATG‑CACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCAt                                                              >  1:202288/1‑149 (MQ=255)                                                                              gAAAAGCCATGTTCCAGTTCATGGCCTTCAC‑CATG‑CACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATg                                                             >  1:325764/1‑149 (MQ=255)                                                                              gAAAAGCCATGTTCCAGTTCATGGCCTTCAC‑CATG‑CACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATg                                                             >  6:329326/1‑149 (MQ=255)                                                                                      aTGTTCCAGTTCATGGCCTTCAC‑CATG‑CACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATGCTGGATTc                                                     >  7:210878/1‑149 (MQ=255)                                                                                        gTTCCAGTTCATGGCCTTCAC‑CATG‑CACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATGCTGGATTCCa                                                   >  4:160615/1‑149 (MQ=255)                                                                                         ttCCAGTTCATGGCCTTCAC‑CATG‑CACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTg                                                                                           <  4:76749‑M2/108‑2 (MQ=255)                                                                                         ttCCAGTTCATGGCCTTCAC‑CATG‑CACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTg                                                                                           >  3:76749‑M2/1‑107 (MQ=255)                                                                                           ccAGTTCATGGCCTTCAC‑CATG‑CACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCATggcgaagagcatggacttgttcaagacgtgcatggtgaaggcca                                                <  2:93312‑M2/149‑45 (MQ=255)                                                                                              gTTCATGGCCTTCAC‑CATG‑CACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATGCTGGATTCCATggg                                               >  5:340818/1‑147 (MQ=255)                                                                                              gTTCATGGCCTTCAC‑CATG‑CACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATGCTGGATTCCATggg                                               <  6:340818/147‑1 (MQ=255)                                                                                                   tGGCCTTCAC‑CATG‑CACGTCTTGAACAAGTCCATGCTCTTCGCCatgaatcccccgtgcaggacagtggacaacgtggcccagtcccggtggttcgcggcgaagagcatggacttgttccagccgtgcatggtgaaggccatgaactgg                                        <  2:93312‑M1/149‑106 (MQ=255)                                                                                                   tGGCCTTCAC‑CATG‑CACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATGCTGGATTCCATGGGGatgaat                                        <  6:170046/149‑1 (MQ=255)                                                                                                       cTTCAC‑CATG‑CACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATGCTGGATTCCATGGGGATGAATgag                                     >  5:95011/1‑148 (MQ=255)                                                                                                        ttCAC‑CATG‑CACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATGCTGGATTCCATgg                                                >  4:54307/1‑136 (MQ=255)                                                                                                        ttCAC‑CATG‑CACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATGCTGGATTCCATgg                                                <  3:54307/136‑1 (MQ=255)                                                                                                              cATG‑CACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGAc                                                                                >  6:306505/1‑99 (MQ=255)                                                                                                                   cACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATGCTGGATTCCATGGGGATGAATGAGGAGAACCGc                            >  1:244585/1‑147 (MQ=255)                                                                                                                               aaGTCCATGCTCTTCGCCGCGAACCACCGGGACAGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATGCTGGATTCCATGGGGATGAATGAGGAGAACCGCCAGAAGTTCCTGGa              >  1:47283/1‑149 (MQ=255)                                                                                                                                 gTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATGCTGGATTCCATgggg                                              <  3:308587/115‑1 (MQ=255)                                                                                                                                 gTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATGCTGGATTCCATgggg                                              >  4:308587/1‑115 (MQ=255)                                                                                                                                     aTGCTCTTGGCCGCTCACCCCCGGGACTGGGCCACGTTGTCCACTGGGCTGCACGGGGGATTCCTggcgaagagcatggacttgttccagccgtgtcatggtgaaggccatgaactggaacatggcttttcctagtgtggtccccatga        >  1:93312‑M2/1‑65 (MQ=255)                                                                                                                                         tctTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTggcgaagagcatggacttgttccagccgtgcatggtgaaggccatgaactggaacatggcttttcctagtgtggtccccatgagtgg     <  3:1221‑M2/148‑88 (MQ=255)                                                                                                                                             cgccgcGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATGCTGGATTCCATGGGGATGAATGAGGAGAACCGCCAGAAGTTCCTGGACCAGCGTATGGc  <  5:329326/147‑1 (MQ=255)                                                                                                                                               ccgcGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACggg                                                                                                    <  7:208434/47‑1 (MQ=255)                                                                                                                                               ccgcGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACggg                                                                                                    >  8:208434/1‑47 (MQ=255)                                                                                                                                                caggaatcccccgtgcaggacagtggacaacgtggcccagtcccggtggttcgcggcgaagagcatggacttgttccagccgtgcatggtgaaggccatgaactggaa                                      >  3:76749‑M1/1‑1 (MQ=255)                                                                                                                                                caggaatcccccgtgcaggacagtggacaacgtggcccagtcccggtggttcgcggcgaagagcatggacttgttccagccgtgcatggtgaaggccatgaactggaa                                      <  4:76749‑M1/108‑108 (MQ=255)                                                                                                                                                |                                                                                                                                                GATGCACCGTGAGTCTCGCCGTGTCATCCAGGAGAACGACCTTAGCTCCATGATTCCACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCAC‑CATG‑CACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATGCTGGATTCCATGGGGATGAATGAGGAGAACCGCCAGAAGTTCCTGGACCAGCGTATGGC  >  NC_002947/2615153‑2615437

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.