New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2615294	45 (0.790)	4 (0.070)	4/250	NT	8.3%	coding (4233/4710 nt)	PP_2287	internal core protein
	?	NC_002947	= 2615347	45 (0.830)					coding (4286/4710 nt)	PP_2287	internal core protein

CACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCAC‑CATGCACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATGCTGGATTCCATGGGGATGAATGAGGAGAACCGCCAGAAGTTCCTGGACCAGCGTATGGCCCCCGGCCAGATCGTGGCCAACAGCTTCGGCAAAATTTCTCAGGCTTCTCTTCTGCC  >  NC_002947/2615209‑2615494                                                                                                                                            |                                                                                                                                                    cACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCAC‑CATGCACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCt                                                                                                                                            >  8:27759/1‑148 (MQ=255) cACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCAC‑CATGCACGGCTGGAACAAGTAAATGCTCTTCGCCGCGAACCACCGGGACTGGGCAACGTTTTCCACTGTCATGCACGGGGGATTCCTGACGAGCCt                                                                                                                                            >  1:327240/1‑148 (MQ=255) cACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTCCAC‑CATGCTCGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCATGGGGGATTCCTGGCGAGCCt                                                                                                                                            >  6:180443/1‑148 (MQ=255)   cTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCAC‑CATGCACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGAc                                                                                                                                         <  6:204745/149‑1 (MQ=255)                 acTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCAC‑CATGCACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGaa                                                                                                                           >  5:213976/1‑149 (MQ=255)                 acTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCAC‑CATGCACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGaa                                                                                                                           >  5:170046/1‑149 (MQ=255)                    aGGAAAAGCCATGTTCCAGTTCATGGCCTTCAC‑CATGCACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGAc                                                                                                                                         >  8:253113/1‑132 (MQ=255)                    aGGAAAAGCCATGTTCCAGTTCATGGCCTTCAC‑CATGCACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGAc                                                                                                                                         <  7:253113/132‑1 (MQ=255)                     ggAAAAGCCATGTTCCAGTTCATGGCCTTCACTCATGCACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCa                                                                                                                        >  1:42520/1‑149 (MQ=255)                     ggAAAAGCCATGTTCCAGTTCATGGCCTTCAC‑CATGCACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCAt                                                                                                                       >  1:202288/1‑149 (MQ=255)                      gAAAAGCCATGTTCCAGTTCATGGCCTTCAC‑CATGCACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATg                                                                                                                      >  6:329326/1‑149 (MQ=255)                      gAAAAGCCATGTTCCAGTTCATGGCCTTCAC‑CATGCACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATg                                                                                                                      >  1:325764/1‑149 (MQ=255)                              aTGTTCCAGTTCATGGCCTTCAC‑CATGCACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATGCTGGATTc                                                                                                              >  7:210878/1‑149 (MQ=255)                                gTTCCAGTTCATGGCCTTCAC‑CATGCACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATGCTGGATTCCa                                                                                                            >  4:160615/1‑149 (MQ=255)                                 ttCCAGTTCATGGCCTTCAC‑CATGCACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTg                                                                                                                                                    >  3:76749‑M2/1‑107 (MQ=255)                                 ttCCAGTTCATGGCCTTCAC‑CATGCACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTg                                                                                                                                                    <  4:76749‑M2/108‑2 (MQ=255)                                   ccAGTTCATGGCCTTCAC‑CATGCACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCATggcgaagagcatggacttgttcaagacgtgcatggtgaaggcca                                                                                                         <  2:93312‑M2/149‑45 (MQ=255)                                      gTTCATGGCCTTCAC‑CATGCACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATGCTGGATTCCATggg                                                                                                        >  5:340818/1‑147 (MQ=255)                                      gTTCATGGCCTTCAC‑CATGCACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATGCTGGATTCCATggg                                                                                                        <  6:340818/147‑1 (MQ=255)                                           tGGCCTTCAC‑CATGCACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATGCTGGATTCCATGGGGatgaat                                                                                                 <  6:170046/149‑1 (MQ=255)                                               cTTCAC‑CATGCACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATGCTGGATTCCATGGGGATGAATgag                                                                                              >  5:95011/1‑148 (MQ=255)                                                ttCAC‑CATGCACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATGCTGGATTCCATgg                                                                                                         >  4:54307/1‑136 (MQ=255)                                                ttCAC‑CATGCACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATGCTGGATTCCATgg                                                                                                         <  3:54307/136‑1 (MQ=255)                                                      cATGCACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGAc                                                                                                                                         >  6:306505/1‑99 (MQ=255)                                                          cACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATGCTGGATTCCATGGGGATGAATGAGGAGAACCGc                                                                                     >  1:244585/1‑147 (MQ=255)                                                                      aaGTCCATGCTCTTCGCCGCGAACCACCGGGACAGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATGCTGGATTCCATGGGGATGAATGAGGAGAACCGCCAGAAGTTCCTGGa                                                                       >  1:47283/1‑149 (MQ=255)                                                                        gTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATGCTGGATTCCATgggg                                                                                                       <  3:308587/115‑1 (MQ=255)                                                                        gTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATGCTGGATTCCATgggg                                                                                                       >  4:308587/1‑115 (MQ=255)                                                                            aTGCTCTTGGCCGCTCACCCCCGGGACTGGGCCACGTTGTCCACTGGGCTGCACGGGGGATTCCTggcgaagagcatggacttgttccagccgtgtcatggtgaaggccatgaactggaacatggcttttcctagtgtggtccccatga                                                                 >  1:93312‑M2/1‑65 (MQ=255)                                                                                tctTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTggcgaagagcatggacttgttccagccgtgcatggtgaaggccatgaactggaacatggcttttcctagtgtggtccccatgagtgg                                                              <  3:1221‑M2/148‑88 (MQ=255)                                                                                    cgccgcGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATGCTGGATTCCATGGGGATGAATGAGGAGAACCGCCAGAAGTTCCTGGACCAGCGTATGGc                                                           <  5:329326/147‑1 (MQ=255)                                                                                           caccaccGGGTCTGGTCCACGTTGTCCACTGTCCTGCCCGGGGGAATCCTGGGGATGCTGTCCTACATTGGGCGAACCATGCTGGCTTCCATGGGGATGAATGCGGAGCACCGCCACCATGTCCTGGACCAGCGTATGGCCCCCGGCCa                                                  <  6:213976/148‑1 (MQ=255)                                                                                           aaCCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATGCTGGATTCCATGGGGATGAATGAGGAGAACCGCCAGAAGTTCCTGGACCAGCGTATGGCCCCCGGCCa                                                  <  2:244585/149‑1 (MQ=255)                                                                                              caccGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATGCTGGATTCCATGGGGATGAATGAGGAGAACCGCCAGAAGTTCCTGGACCAGCGTATGGCCCCCGGc                                                    >  5:242676/1‑144 (MQ=255)                                                                                                  gggACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATGCTGGATTCCATGGGGATGAATGAGGAGAACCGCCAGAAGTTCCTGGACCAGCGTATGGCCCCCGGCCAGATCGTg                                           <  7:27759/149‑1 (MQ=255)                                                                                                  gggACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATGCTGGATTCCATGGGGATGAATGAGGAGAACCGCCAGAAGTTCCTGGACCAGCGTATGGCCCCCGGCCAGATCGTg                                           <  3:160615/149‑1 (MQ=255)                                                                                                         ggCCACGTTGTCGACTGTCCTGCACGGGTGATTCCTTGCTATCCTGACATACATGGGCCGAACCATGCTGTATTCCATGTTGATTAATGAGGAGAACCGCCAGAAGTTCCTGGACCAGCGTATGGCCCCCGGCCAGATAGTGGCCAACa                                    <  2:327240/149‑1 (MQ=255)                                                                                                         ggCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTggcgaagagcatggacttgttccagccgtgcatggtgaaggccatgaactggaacatggcttttcctagtgtggtccccatgagtggaatcatggagctaaggtcgttctcct                                    >  4:1221‑M2/1‑36 (MQ=255)                                                                                                         ggCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATGCTGGATTCCATGGGGATGAATGAGGAGAACCGCCAGAAGTTCCTGGACCAGCGTATGGCCCCCGGCCAGATCGTGGCCaa                                      >  1:220289/1‑147 (MQ=255)                                                                                                           ccACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATGCTGGATTCCATGGGGATGAATGAGGAGAACCGCCAGAAGTTCCTGGACCAGCGTATGGCCCCCGGCCAGATCGTGGCCAACAGc                                  >  1:339866/1‑149 (MQ=255)                                                                                                              cGTTGTCCACTGTCCTGCATGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATGCTGGATTCCATGGGGATGAATGAGGAGAACCGCCAGAAGTTCCTGGACCAGCGTATGGCCCCCGGCCAGATCGTGGCCAACAGCTTc                               <  5:180443/149‑1 (MQ=255)                                                                                                                     cACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATGCTGGATTCCATGGGGATGAATGAGGAGAACCGCCAGAAGTTCCTGGACCAGCGTATGGCCCCCGGCCAGATCGTGGCCAACa                                    <  5:302054/137‑1 (MQ=255)                                                                                                                     cACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATGCTGGATTCCATGGGGATGAATGAGGAGAACCGCCAGAAGTTCCTGGACCAGCGTATGGCCCCCGGCCAGATCGTGGCCAACa                                    >  6:302054/1‑137 (MQ=255)                                                                                                                          tCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATGCTGGATTCCATGGGGATGAATGAGGAGAACCGCCAGAAGTTCCTGGACCAGCGTATGGCCCCCGGCCAGATCGTGGCCAACAGCTTCGGCAAAAttt                     <  6:242676/147‑1 (MQ=255)                                                                                                                            cTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATGCGGGATTCCATGGGGATGAATGAGGAGAACCGCCAGAAGTTCCTGGACCAGCGTATGGCGCCCGGCCAGATCGTGGCCAACAGCTTCGGCAAAATTTCTCa                 <  7:184992/149‑1 (MQ=255)                                                                                                                             tGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATGCTGGATTCCATGGGGATGAATGAGGAGAACCGCCAGAAGTTCCTGGACCAGCGTATGGCCCCCGGCCAGATCGTGGCCAACAGCTTCGGCAAAATTtct                   >  1:214087/1‑146 (MQ=255)                                                                                                                               cACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATGCTGGATTCCATGGGGATGAATGAGGAGAACCGCCAGAAGTTCCTGGACCAGCGTATGGCCCCCGGCCAGATCGTGGCCAACAGCTTCGGCAAAATTTCTCa                 <  7:89750/146‑1 (MQ=255)                                                                                                                               cACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATGCTGGATTCCATGGGGATGAATGAGGAGAACCGCCAGAAGTTCCTGGACCAGCGTATGGCCCCCGGCCAGATCGTGGCCAACAGCTTCGGCAAAATTTCTCa                 <  2:214087/146‑1 (MQ=255)                                                                                                                               cACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATGCTGGATTCCATGGGGATGAATGAGGAGAACCGCCAGAAGTTCCTGGACCAGCGTATGGCCCCCGGCCAGATCGTGGCCAACAGCTTCGGCAAAATTTCTCa                 >  8:89750/1‑146 (MQ=255)                                                                                                                               cACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATGCTGGATTCCATGGGGATGAATGAGGAGAACCGCCAGAAGTTCCTGGACCAGCGTATGGCCCCCGGCCAGATCGTGGCCAACAGCTTCGGCAAAATTTCTCAgg               <  2:220289/148‑1 (MQ=255)                                                                                                                                aCGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATGCTGGATTCCATGGGGATGAATGAGGAGAACCGCCAGAAGTTCCTGGACCAGCGTATGGCCCCCGGCCAGATCGTGGCCAACAGCTACGGAAAAATTTCTCAGTct             >  6:17342/1‑149 (MQ=255)                                                                                                                                 cGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATGCTGGATTCCATGGGGATGAATGAGGAGAACCGCCAGAAGTTCCTGGACCAGCGTATGGCCCCCGGCCAGATCGTGGCCAACAGCTTCGGCAAAATTTCTCAGGctt            <  2:202288/149‑1 (MQ=255)                                                                                                                                     ggATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATGCTGGATTCCATGGGGATGAATGAGGAGAACCGCCAGAAGTTCCTGGACCAGCGTATGGCCCCCGGCCAGATCGTGGCCAACAGCTTCGGCAAAATTTCTCAgg               >  7:3418/1‑142 (MQ=255)                                                                                                                                     ggATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATGCTGGATTCCATGGGGATGAATGAGGAGAACCGCCAGAAGTTCCTGGACCAGCGTATGGCCCCCGGCCAGATCGTGGCCAACAGCTTCGGCAAAATTTCTCAgg               <  8:3418/142‑1 (MQ=255)                                                                                                                                        ttCCTGGCGAGCCTGACCTACATGGGCCTAACCATGCTGGATTCCATGGTGATGAATGAGGAGAACCGCCAGAAGTTCCTGGACCAGCGTATGGCCCCCGGCCAGATCGTGGCCAACAGCTTCGGCAAAATTTCTCAGGcttctcttct     <  5:17342/149‑1 (MQ=255)                                                                                                                                            tGGCGAGCCTGACCTACATGGGCCGAACCATGCTGGATTCCATGGGGATGAATGAGGAGAACCGCCAGAAGTTCCTGGACCAGCGTATGGCCCCCGGCCAGATCGTGGCCAACAGCTTCGGCAAAATTTCTCAGGCTTCTCTTCTGcc  >  6:216511/1‑148 (MQ=255)                                                                                                                                            |                                                                                                                                                    CACTCATGGGGACCACACTAGGAAAAGCCATGTTCCAGTTCATGGCCTTCAC‑CATGCACGGCTGGAACAAGTCCATGCTCTTCGCCGCGAACCACCGGGACTGGGCCACGTTGTCCACTGTCCTGCACGGGGGATTCCTGGCGAGCCTGACCTACATGGGCCGAACCATGCTGGATTCCATGGGGATGAATGAGGAGAACCGCCAGAAGTTCCTGGACCAGCGTATGGCCCCCGGCCAGATCGTGGCCAACAGCTTCGGCAAAATTTCTCAGGCTTCTCTTCTGCC  >  NC_002947/2615209‑2615494

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.