| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2901425 = | 41 (0.720) | 3 (0.060) | 3/244 | NT | 7.4% | coding (507/1908 nt) | quiC | 3‑dehydroshikimate dehydratase |
| ? | NC_002947 | 2901477 = | 37 (0.700) | coding (559/1908 nt) | quiC | 3‑dehydroshikimate dehydratase | |||||
CCATGTCCATTTCGCCCTGCCCCGGGAAGCAGCGAAAGTGGCGGCTCCACTCCAGCACATCCATGGCCAGGATCGGCGCATCGGCCATTTGCACGAAGAAGATCTTGTCGCCGGGGATGTCGCGGATCGCGCTGGGGTCACCTTTGAGCGACAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2901579‑2901425‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgacaagATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGCCGCCACTTTCGCTGCTTCCCGGGGCAGGGCGAAATGGACATGGCCGGTTTCCTGGCGCCGATCCTCGCCACGGGTTACCGTGGCCCG > NC_002947/2901477‑2901623 CCATGTCCATTTCGCCCTGCCCCGGGAAGCAGCGAAAGTGGCGGCTCCACTCCAGCACATCCATGGCCAGGATCGGCGCATCGGCCATTTGCACGAAGAAGATCTTGTCGCCGGGGATGTCGCGGATCGCGCTGGGGTCACCTTTGAGC < 7:100399/149‑1CCATGTCCATTTCGCCCTGCCCCGGGAAGCAGCGAAAGTGGCGGCTCCACTCCAGCACATCCATGGCCAGGATCGGCGCATCGGCCATTTGCACGAAGAAGATCTTGTCGCCGGGGATGTCGCGGATCGCGCTGGGGTCACCTTTGAGC > 7:77216/1‑149 GTCCATTTCGCCCTGCCCCGGGAAGCAGCGAAAGTGGCGGCTCCACTCCAGCACATCCATGGCCAGGATCGGCGCATCGGCCATTTGCACGAAGAAGATCTTGTCGCCGGGGATGTCGCGGATCGCGCTGGGGTCACCTTTGAGCGAC > 5:310196/1‑148 TGCCCCGGGAAGCAGCGAAAGTGGCGGCTCCACTCCAGCACATCCATGGCCAGGATCGGCGCATCGGCCATTTGCACGAAGAAGATCTTGTCGCCGGGGATGTCGCGGATCGCGCTGGGGTCACCTTTGAG < 7:260729/131‑1 TGCCCCGGGAAGCAGCGAAAGTGGCGGCTCCACTCCAGCACATCCATGGCCAGGATCGGCGCATCGGCCATTTGCACGAAGAAGATCTTGTCGCCGGGGATGTCGCGGATCGCGCTGGGGTCACCTTTGAG > 8:260729/1‑131 AAGATCTTGTCGCCGGGGATGTCGCGGATCGCGCTGGGGTCACCTTTGAGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGCCGCCACTTTCGCTGCTTCCCGGGGCAGGGCG > 2:338971/1‑148 GATCTTGTCGCCGGGGATGTCGCGGATCGCGCTGGGGTCACCTTTGAGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGCCGCCACTTTCGCTGCTTCCCGGGGCAGGGCGAAA > 1:139090/1‑149 GGGGATGTCGCGGATCGCGCTGGGGTCACCTTTGAGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGCCGCCACTTTCGCTGCTTCCCGGGGCAGGGCGAAATGGACATGGCCG < 2:139090/149‑1 CGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGCCGCCACTTTCGCTGCTTCCCGGGGCAGGGCGAAATGGACATGGCCGGTTTCCTGGCGCCGATCCTCGCCACGGGTTACCGTG < 8:164062/149‑1 AGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGCCGCCACTTTCGCTGCTTCCCGGGGCAGGGCGAAATGGACATGGCCGGTTTCCTGGCGCCGATCCTCGCCACGGGTTACCGTGGCCCG < 6:74024/149‑1 GATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGCCGCCACTTTCGCTGCTTCCCGGGGCAGGGCGAAATGGACATGGCCGGTTTCCTGGCGCCGATCCTCGCCACGG < 4:2156/134‑1 GATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGACGCCACTTTCGCTGCTTCCCGGGGCAGGGCGAAATGGACATGGCCGGTTTCCTGGCGCCGATCCTCGCCACGG > 3:2156/1‑134 CCATGTCCATTTCGCCCTGCCCCGGGAAGCAGCGAAAGTGGCGGCTCCACTCCAGCACATCCATGGCCAGGATCGGCGCATCGGCCATTTGCACGAAGAAGATCTTGTCGCCGGGGATGTCGCGGATCGCGCTGGGGTCACCTTTGAGCGACAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2901579‑2901425‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgacaagATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGCCGCCACTTTCGCTGCTTCCCGGGGCAGGGCGAAATGGACATGGCCGGTTTCCTGGCGCCGATCCTCGCCACGGGTTACCGTGGCCCG > NC_002947/2901477‑2901623 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |