New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2901425 =	41 (0.720)	3 (0.060)	3/244	NT	7.4%	coding (507/1908 nt)	quiC	3‑dehydroshikimate dehydratase
	?	NC_002947	2901477 =	37 (0.700)					coding (559/1908 nt)	quiC	3‑dehydroshikimate dehydratase

GGGCGAACATGCCGGCAAGCGTGGCCTGCGCATTGGTTACGAAGCGCTGGCCTGGGGCCGCCACGTCAACACTTACCAGCAAGTGTGGAACCTGGTGCGCCAGGCCGACCACCCGGCACTCGGGGTGATCCTCGACAGCTTCCACACCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGCCGCCACTTTCGCTGCTTCCCGGGGCAGGGCGAAATG  >  NC_002947/2901278‑2901572                                                                                                                                                    |                                                                                                                                                     cgggccacggtaacccgtggcgaggatcggcgccaggaaaccggccatgtccatttcgccctgccccgggaagcagcgaaagtggcggctccactccagcacatccatggccaggatcggcgcatcggccatttgcacgaagaagatCt                                                                                                                                                     <  6:74024‑M1/2‑1 (MQ=255)    cGAACATGCCGGCAAGCGTGGCCTGCGCATTGGTTACGAAGCGCTGGCCTGGGGCCGCCACGTCAACACTTACCAGCAAGTGTGGAACCTGGTGCGCCAGGCCGACCACCCGGCACTCGGGGTGATCCTCGACAGCTTCCACACCTTGt                                                                                                                                                  <  4:91341/149‑1 (MQ=255)      cacggtaacccgtggcgaggatcggcgccaggaaaccggccatgtccatttcgccctgccccgggaagcagcgaaagtggcggctccactccagcacatccatggccaggatcggcgcatcggccatttgcacgaagaagatCTTGTCg                                                                                                                                                <  8:164062‑M1/7‑1 (MQ=255)         aTGCCGGCTAGCGTGGCCTGCGCATTGGTTACGAAGCGCTGGCCTGGGGCCGCCACGTCAACACTTACCAGCAAGTGTAGAACCTGGTGCGCCAGGCCGACCACCCGGCACTCGGGGTGATCCTCGACAGCTTCCACACCTTGTCGCt                                                                                                                                              >  7:236602/1‑148 (MQ=255)              ggCAAGCGTGGCCTGCGCATTGGTTACGAAGCGCTGGCCTGGGGCCGCCACGTCAACACTTACCAGCAAGTGTGGAACCTGGTGCGCCAGGCCGACCACCCGGCACTCGGGGTGATCCTCGACAGCTTCCACACCTTGTCGCTCAAAg                                                                                                                                         >  7:118837/1‑148 (MQ=255)              ggCAAGCGTGGCCTGCGCATTGGTTACGAAGCGCTGGCCTGGGGCCGCCACGTCAACACTTACCAGCAAGTGTGGAACCTGGTGCGCCAGGCCGACCACCCGGCACTCGGGGTGATCCTCGACAGCTTCCACACCTTGTCGCTCAAAg                                                                                                                                         <  8:118837/148‑1 (MQ=255)               ccgtggcgaggatcggcgccaggaaaccggccatgtccatttcgccctgccccgggaagcagcgaaagtggcgtctccactccagcacatccatggccaggatcggcgcatcggccatttgcacgaagaagatc                                                                                                                                                      >  3:2156‑M1/134‑134 (MQ=255)               ccgtggcgaggatcggcgccaggaaaccggccatgtccatttcgccctgccccgggaagcagcgaaagtggcggctccactccagcacatccatggccaggatcggcgcatcggccatttgcacgaagaagatc                                                                                                                                                      <  4:2156‑M1/1‑1 (MQ=255)                         ccTGCGCATTGGTTACGAAGCGCTGGCCTGGGGCCGCCACGTCAACAATTACCAGCAAGTGTGGAACCTGGTGCGCCAGGCCGACCACCCGGCACTCGGGGTGATCCTCGACAGCTTCCACACCTTGTCGCTCAAAGGTGACCCCAg‑cg                                                                                                                            >  1:262572/1‑149 (MQ=255)                          cTGCGCATTGGTTACGAAGCGCTGGCCTGGGGCCGCCACGTCAACACTTACCAGCAAGTGTGGAACCTGGTGCGCCAGGCCGACCACCCGGCACTCGGGGTGATCCTCGACAGCTTCCACACCTTGTCGCTCAAAGGTGACCCCAg‑cgc                                                                                                                           >  2:354690/1‑149 (MQ=255)                           tGCGCATTGGTTACGAAGCGCTGGCCTGGGGCCGCCACGTCAACACTTACCAGCAAGTGTGGAACATGGTGCGCCAGGCCGACCACCCGGCACTCGGGGTGATCCTCGACAGCTTCCACACCTTGTCGCTCAAAGGTGACCCCAg‑cgc                                                                                                                           >  8:217389/1‑148 (MQ=255)                                aTTGGTTACGAAGCGCTGGCCTGGGGCCGCCACGTCAACACTTACCAGCAAGTGTGGAACCTGGTGCGCCAGGCCGACCACCCGGCACTCGGGGTGATCCTCGACAGCTTCCACACCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCcg                                                                                                                     >  8:335784/1‑149 (MQ=255)                                         gAAGCGCTGGCCTGGGGCCGCCACGTCAACACTTACCAGCAAGTGTGGAACCTGGTGCGCCAGGCCGACCACCCGGCACTCGGGGTGATCCTCGACAGCTTCCACACCTTGTCGCTCAAAGGTGACCCCa                                                                                                                                <  4:319898/130‑1 (MQ=255)                                         gAAGCGCTGGCCTGGGGCCGCCACGTCAACACTTACCAGCAAGTGTGGAACCTGGTGCGCCAGGCCGACCACCCGGCACTCGGGGTGATCCTCGACAGCTTCCACACCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATccc                                                                                                            >  2:231576/1‑149 (MQ=255)                                          cggccatgtccatttcgccctgccccgggaagcagcgaaagtggcggctccactccagcacatccatggccaggatcggcgcatcggccatttgcacgaagaagatCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATcccc                                                                                                           <  2:139090‑M1/43‑1 (MQ=255)                                            gcgcTGGCCTGGGGCCGCCACGTCAACACTTACCAGCAAGTGTGGAACCTGGTGCGCCAGGCCGACCACCCGGCACTCGGGGTGATCCTCGACAGCTTCCACACCTTGTCGCTCAAAGGTGACCCCAg                                                                                                                               <  3:182186/128‑1 (MQ=255)                                            gcgcTGGCCTGGGGCCGCCACGTCAACACTTACCAGCAAGTGTGGAACCTGGTGCGCCAGGCCGACCACCCGGCACTCGGGGTGATCCTCGACAGCTTCCACACCTTGTCGCTCAAAGGTGACCCCAg                                                                                                                               >  4:182186/1‑128 (MQ=255)                                                     tGGGGCCGCCACGTCAACACTTACCAGCAAGTGTGGAACCTGGTGCGCCAGGCCGACCACCCGGCACTCGGGGTGATCCTCGACAGCTTCCACACCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGAt                                                                                                >  6:310196/1‑149 (MQ=255)                                                      tttcgccctgccccgggaagcagcgaaagtggcggctccactccagcacatccatggccaggatcggcgcatcggccatttgcacgaagaagatCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGAtc                                                                                               >  1:139090‑M1/95‑149 (MQ=255)                                                         cgccctgccccgggaagcagcgaaagtggcggctccactccagcacatccatggccaggatcggcgcatcggccatttgcacgaagaagatCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGAtctt                                                                                             >  2:338971‑M1/92‑148 (MQ=255)                                                          ccgccACGTCAACACTTACCAGCAAGTGTGGAACCTGGTGCGCCAGGCCGACCACCCGGCACTCGGGGTGATCCTCGACAGCTTCCACACCTTGTCGCTCAAAGGTGACCCCAGCCGCGATCCGCGACATCCCCGGCGACAAGAtcttc                                                                                            <  1:231576/149‑1 (MQ=255)                                                            gccACGTCAACACTTACCAGCAAGTGTGGAACCTGGTGCGCCAGGCCGACCACCCGGCACTCGGGGTGATCCTCGACAGCTACCACACCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACaa                                                                                                   >  8:71477/1‑139 (MQ=255)                                                            gccACGTCAACACTTACCAGCAAGTGTGGAACCTGGTGCGCCAGGCCGACCACCCGGCACTCGGGGTGATCCTCGACAGCTACCACACCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACaa                                                                                                   <  7:71477/139‑1 (MQ=255)                                                              cACGTCAACACTTACCAGCAAGTGTGGAACCTGGTGCGCCAGGCCGACCACCCGGCACTCGGGGTGATCCTCGACAGCTTCCACACCTTGTCGCTCAAAGGTGACCCGAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGt                                                                                       <  7:164284/149‑1 (MQ=255)                                                                   cAACACTTACCAGCAAGTGTGGAACCTGGTGCGCCAGGCCGACCACCCGGCACTCGGGGTGATCCTCGACAGCTTCCACACCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGAtcttc                                                                                            >  8:41400/1‑139 (MQ=255)                                                                   cAACACTTACCAGCAAGTGTGGAACCTGGTGCGCCAGGCCGACCACCCGGCACTCGGGGTGATCCTCGACAGCTTCCACACCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGAtcttc                                                                                            <  7:41400/139‑1 (MQ=255)                                                                       acTTACCAGCAAGTGTGGAACCTGGTGCGCCAGGCCGACCACCCGGCACTCGGGGTGATCCTCGACAGCTTCCACACCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGc                                                                              <  7:335784/149‑1 (MQ=255)                                                                              aGCAAGTGTGGAACCTGGTGCGCCAGGCCGACCACCCGGCACTCGGGGTGATCCTCGACAGCTTCCACACCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGa                                                                           <  5:289920/145‑1 (MQ=255)                                                                              aGCAAGTGTGGAACCTGGTGCGCCAGGCCGACCACCCGGCACTCGGGGTGATCCTCGACAGCTTCCACACCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGa                                                                           >  6:289920/1‑145 (MQ=255)                                                                               gCAAGTGTGGAACCTGGTGCGCCAGGCCGACCACCCGGCACTCGGGGTGATCCTCGACAGCTTCCACACCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATgcgc                                                                      >  4:161286/1‑149 (MQ=255)                                                                                   gtgtGGAACCTGGTGCGCCAGGCCGACCACCCGGCACTCGGGGTGATCCTCGACAGCTTCCAAACCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGCCATCCCCGGCGACAAGAACTGCTTCGTGCAAATGGCCGATGCGCCGAt                                                                  >  6:349959/1‑149 (MQ=255)                                                                                        gAACCTGGTGCGCCAGGCCGACCACCCGGCACTCGGGGTGATCCTCGACAGCTTCCACACCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTgg                                                             >  8:144151/1‑149 (MQ=255)                                                                                        gAACCTGGTGCGCCAGGCCGACCACCCGGCACTCGGGGTGATCCTCGACAGCTTCCACACCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTg                                                              <  3:161286/148‑1 (MQ=255)                                                                                        gAACCTGGTGCGCCAGGCCGACCACCCGGCACTCGGGGTGATCCTCGACAGCTTCCACACCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTg                                                              <  2:262572/148‑1 (MQ=255)                                                                                                            accaccCGGCACTCGGGGTGATCCTCGACAGCTTCCACACCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCtggagtgg                                         <  1:354690/149‑1 (MQ=255)                                                                                                                cccGGCACTCGGGGTGATCCTCGACAGCTTCCACACCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAgcc                                     >  8:77216/1‑149 (MQ=255)                                                                                                                cccGGCACTCGGGGTGATCCTCGACAGCTTCCACACCTTGTCACTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTgg                                                             >  6:215967/1‑125 (MQ=255)                                                                                                                cccGGCACTCGGGGTGATCCTCGACAGCTTCCACACCTTGTCACTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTgg                                                             <  5:215967/125‑1 (MQ=255)                                                                                                                 ccGGCACTCGGGGTGATCCTCGACAGCTTCCACACCTTGTCGCTCAAAGGTGGCCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCtggagtgga                                        <  7:62553/145‑1 (MQ=255)                                                                                                                 ccGGCACTCGGGGTGATCCTCGACAGCTTCCACACCTTGTCGCTCAAAGGTGGCCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCtggagtgga                                        >  8:62553/1‑145 (MQ=255)                                                                                                                     cACTCGGGGAGATCCACGACAGCATCCACACCTGGTCGCTCAACGGTGCCCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGCCGCCAc                                <  8:236602/149‑1 (MQ=255)                                                                                                                      aCTCGGGGTGATCCTCGACAGCTTCCACACCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGCCGCCACt                               >  1:24386/1‑149 (MQ=255)                                                                                                                          ggggTGATCCTCGACAGCTTCCACACCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGCCGCCACTTTCg                           >  2:208526/1‑149 (MQ=255)                                                                                                                              tGATCCTCGACAGCTTCCACACCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGCCGCCACTTTCgctgc                       >  4:97494/1‑149 (MQ=255)                                                                                                                                aTCCTCGACAGCTTCCACACCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGCCGCCACTTTCgctgct                      <  7:144151/148‑1 (MQ=255)                                                                                                                                       aCAGCTTCCACACCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGCCGCCACTTTCGCTGCTTCCCgggg              <  2:24386/149‑1 (MQ=255)                                                                                                                                           cTTCCACACCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGCCGCCACTTTCGCTGCTTCCCGGGGCAgg          >  8:322478/1‑149 (MQ=255)                                                                                                                                              ccACACCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGCCGCCACTTTCGCTGCTTCCCGGGGCAGGGc        <  7:217389/148‑1 (MQ=255)                                                                                                                                              ccACACCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGCCGCCACTTTCGCTGCTTCCCGGGGCAGGGc        >  2:138719/1‑148 (MQ=255)                                                                                                                                                acacCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGCCGCCACTTTCGCTGCTTCCCGGGGCAGGGCGa      >  5:74024/1‑148 (MQ=255)                                                                                                                                                   ccTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGCCGCCACTTTCGCTGCTTCCCGGGGCAGGGCGAAATg  <  7:322478/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                     GGGCGAACATGCCGGCAAGCGTGGCCTGCGCATTGGTTACGAAGCGCTGGCCTGGGGCCGCCACGTCAACACTTACCAGCAAGTGTGGAACCTGGTGCGCCAGGCCGACCACCCGGCACTCGGGGTGATCCTCGACAGCTTCCACACCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGCCGCCACTTTCGCTGCTTCCCGGGGCAGGGCGAAATG  >  NC_002947/2901278‑2901572

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.