New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2901425 =	41 (0.720)	3 (0.060)	3/244	NT	7.4%	coding (507/1908 nt)	quiC	3‑dehydroshikimate dehydratase
	?	NC_002947	2901477 =	37 (0.700)					coding (559/1908 nt)	quiC	3‑dehydroshikimate dehydratase

TGGGGCCGCCACGTCAACACTTACCAGCAAGTGTGGAACCTGGTGCGCCAGGCCGACCACCCGGCACTCGGGGTGATCCTCGACAGCTTCCACACCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGCCGCCACTTTCGCTGCTTCCCGGGGCAGGGCGAAATGGACATGGCCGGTTTCCTGGCGCCGATCCTCGCCACGGGTTACCGTGGCCCG  >  NC_002947/2901330‑2901623                                                                                                                                                     |                                                                                                                                                   tGGGGCCGCCACGTCAACACTTACCAGCAAGTGTGGAACCTGGTGCGCCAGGCCGACCACCCGGCACTCGGGGTGATCCTCGACAGCTTCCACACCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGAt                                                                                                                                                   >  6:310196/1‑149 (MQ=255)  tttcgccctgccccgggaagcagcgaaagtggcggctccactccagcacatccatggccaggatcggcgcatcggccatttgcacgaagaagatCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGAtc                                                                                                                                                  >  1:139090‑M1/95‑149 (MQ=255)     cgccctgccccgggaagcagcgaaagtggcggctccactccagcacatccatggccaggatcggcgcatcggccatttgcacgaagaagatCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGAtctt                                                                                                                                                >  2:338971‑M1/92‑148 (MQ=255)      ccgccACGTCAACACTTACCAGCAAGTGTGGAACCTGGTGCGCCAGGCCGACCACCCGGCACTCGGGGTGATCCTCGACAGCTTCCACACCTTGTCGCTCAAAGGTGACCCCAGCCGCGATCCGCGACATCCCCGGCGACAAGAtcttc                                                                                                                                               <  1:231576/149‑1 (MQ=255)          cACGTCAACACTTACCAGCAAGTGTGGAACCTGGTGCGCCAGGCCGACCACCCGGCACTCGGGGTGATCCTCGACAGCTTCCACACCTTGTCGCTCAAAGGTGACCCGAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGt                                                                                                                                          <  7:164284/149‑1 (MQ=255)               cAACACTTACCAGCAAGTGTGGAACCTGGTGCGCCAGGCCGACCACCCGGCACTCGGGGTGATCCTCGACAGCTTCCACACCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGAtcttc                                                                                                                                               <  7:41400/139‑1 (MQ=255)               cAACACTTACCAGCAAGTGTGGAACCTGGTGCGCCAGGCCGACCACCCGGCACTCGGGGTGATCCTCGACAGCTTCCACACCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGAtcttc                                                                                                                                               >  8:41400/1‑139 (MQ=255)                   acTTACCAGCAAGTGTGGAACCTGGTGCGCCAGGCCGACCACCCGGCACTCGGGGTGATCCTCGACAGCTTCCACACCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGc                                                                                                                                 <  7:335784/149‑1 (MQ=255)                          aGCAAGTGTGGAACCTGGTGCGCCAGGCCGACCACCCGGCACTCGGGGTGATCCTCGACAGCTTCCACACCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGa                                                                                                                              >  6:289920/1‑145 (MQ=255)                          aGCAAGTGTGGAACCTGGTGCGCCAGGCCGACCACCCGGCACTCGGGGTGATCCTCGACAGCTTCCACACCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGa                                                                                                                              <  5:289920/145‑1 (MQ=255)                           gCAAGTGTGGAACCTGGTGCGCCAGGCCGACCACCCGGCACTCGGGGTGATCCTCGACAGCTTCCACACCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATgcgc                                                                                                                         >  4:161286/1‑149 (MQ=255)                               gtgtGGAACCTGGTGCGCCAGGCCGACCACCCGGCACTCGGGGTGATCCTCGACAGCTTCCAAACCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGCCATCCCCGGCGACAAGAACTGCTTCGTGCAAATGGCCGATGCGCCGAt                                                                                                                     >  6:349959/1‑149 (MQ=255)                                    gAACCTGGTGCGCCAGGCCGACCACCCGGCACTCGGGGTGATCCTCGACAGCTTCCACACCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTgg                                                                                                                >  8:144151/1‑149 (MQ=255)                                    gAACCTGGTGCGCCAGGCCGACCACCCGGCACTCGGGGTGATCCTCGACAGCTTCCACACCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTg                                                                                                                 <  2:262572/148‑1 (MQ=255)                                    gAACCTGGTGCGCCAGGCCGACCACCCGGCACTCGGGGTGATCCTCGACAGCTTCCACACCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTg                                                                                                                 <  3:161286/148‑1 (MQ=255)                                                        accaccCGGCACTCGGGGTGATCCTCGACAGCTTCCACACCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCtggagtgg                                                                                            <  1:354690/149‑1 (MQ=255)                                                            cccGGCACTCGGGGTGATCCTCGACAGCTTCCACACCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAgcc                                                                                        >  8:77216/1‑149 (MQ=255)                                                            cccGGCACTCGGGGTGATCCTCGACAGCTTCCACACCTTGTCACTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTgg                                                                                                                <  5:215967/125‑1 (MQ=255)                                                            cccGGCACTCGGGGTGATCCTCGACAGCTTCCACACCTTGTCACTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTgg                                                                                                                >  6:215967/1‑125 (MQ=255)                                                             ccGGCACTCGGGGTGATCCTCGACAGCTTCCACACCTTGTCGCTCAAAGGTGGCCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCtggagtgga                                                                                           >  8:62553/1‑145 (MQ=255)                                                             ccGGCACTCGGGGTGATCCTCGACAGCTTCCACACCTTGTCGCTCAAAGGTGGCCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCtggagtgga                                                                                           <  7:62553/145‑1 (MQ=255)                                                                 cACTCGGGGAGATCCACGACAGCATCCACACCTGGTCGCTCAACGGTGCCCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGCCGCCAc                                                                                   <  8:236602/149‑1 (MQ=255)                                                                  aCTCGGGGTGATCCTCGACAGCTTCCACACCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGCCGCCACt                                                                                  >  1:24386/1‑149 (MQ=255)                                                                      ggggTGATCCTCGACAGCTTCCACACCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGCCGCCACTTTCg                                                                              >  2:208526/1‑149 (MQ=255)                                                                          tGATCCTCGACAGCTTCCACACCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGCCGCCACTTTCgctgc                                                                          >  4:97494/1‑149 (MQ=255)                                                                            aTCCTCGACAGCTTCCACACCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGCCGCCACTTTCgctgct                                                                         <  7:144151/148‑1 (MQ=255)                                                                                   aCAGCTTCCACACCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGCCGCCACTTTCGCTGCTTCCCgggg                                                                 <  2:24386/149‑1 (MQ=255)                                                                                       cTTCCACACCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGCCGCCACTTTCGCTGCTTCCCGGGGCAgg                                                             >  8:322478/1‑149 (MQ=255)                                                                                          ccACACCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGCCGCCACTTTCGCTGCTTCCCGGGGCAGGGc                                                           <  7:217389/148‑1 (MQ=255)                                                                                          ccACACCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGCCGCCACTTTCGCTGCTTCCCGGGGCAGGGc                                                           >  2:138719/1‑148 (MQ=255)                                                                                            acacCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGCCGCCACTTTCGCTGCTTCCCGGGGCAGGGCGa                                                         >  5:74024/1‑148 (MQ=255)                                                                                            aagatcttgtcgccggggatgtcgcggatcgcgctggggtcacctttgagcgacaagATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGCCGCCACTTTCGCTGCTTCCCGGGGCAGGGCg                                                          >  2:338971‑M2/58‑148 (MQ=255)                                                                                              gatcttgtcgccggggatgtcgcggatcgcgctggggtcacctttgagcgacaagATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGCCGCCACTTTCGCTGCTTCCCGGGGCAGGGCGaaa                                                       >  1:139090‑M2/56‑149 (MQ=255)                                                                                               ccTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGCCGCCACTTTCGCTGCTTCCCGGGGCAGGGCGAAATg                                                     <  7:322478/149‑1 (MQ=255)                                                                                                   GTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGCCGCCACTTTCGCTGCTTCCCGGGGCAGGGCGAAATGGAc                                                  >  5:310196‑M1/1‑148 (MQ=255)                                                                                                      GCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGCCGCCACTTTCGCTGCTTCCCGGGGCAGGGCGAAATGGACATgg                                              >  7:77216‑M1/1‑149 (MQ=255)                                                                                                      GCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGCCGCCACTTTCGCTGCTTCCCGGGGCAGGGCGAAATGGACATgg                                              <  7:100399‑M1/149‑1 (MQ=255)                                                                                                       CTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGCCGCCACTTTCGCTGCTTCCCGGGGCa                                                               <  7:260729‑M1/131‑1 (MQ=255)                                                                                                       CTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGCCGCCACTTTCGCTGCTTCCCGGGGCa                                                               >  8:260729‑M1/1‑131 (MQ=255)                                                                                                        tCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGCCGCCACTTTCGCTGCTTCCCGGGGCAGGGCGAAATGGACATGGcc                                            >  7:164062/1‑149 (MQ=255)                                                                                                          ggggatgtcgcggatcgcgctggggtcacctttgagcgacaagATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGCCGCCACTTTCGCTGCTTCCCGGGGCAGGGCGAAATGGACATGGCCg                                           <  2:139090‑M2/106‑1 (MQ=255)                                                                                                            aGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGCCGCCACTTTCGCTGCTTCCCGGGGCAGGGCGAAATGGACATGGCCGGtt                                        <  3:97494/149‑1 (MQ=255)                                                                                                                    ccAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGCCGCCACTTTCGCTGCTTCCCGGGGCAGGGCGAAATGGACATGGCCGGTTTCCTGgcg                                >  8:228636/1‑149 (MQ=255)                                                                                                                              tCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGCCGCCACTTTCGCTGCTTCCCGGGGCAGGGCGAAATGGACATGGCCGGTTTCCTGGCGCCGATCCTc                       >  7:211841/1‑149 (MQ=255)                                                                                                                                cgcgACATCCCCGGCGACAATCTCTTCTTCGTGCAACTGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGCCGCCACTTTCGCTGCTTCCCGGGGCAGGGCGAAATGGACATGGCCGGTTTCCTGGCGCCGATCCTCGc                     <  5:349959/149‑1 (MQ=255)                                                                                                                                cgcgACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGCCGCCACTTTCGCTGCTTCCCGGGGCAGGGCGAAATGGACATGGCCGGTTTCCTGGCGCCGATCCTCGc                     <  8:100399/149‑1 (MQ=255)                                                                                                                                cgcgACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGCCGCCACTTTCGCTGCTTCCCGGGGCAGGGCGAAATGGACATGGCCGGTTTCCTGGCGCCGATCCTCGc                     >  6:90514/1‑149 (MQ=255)                                                                                                                                    aCATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGCCGCCACTTTCGCTGCTTCCCGGGGCAGGGCGAAATGGACATGGCCGGTTTCCTGGCGCCGATCCTCGCCACg                 >  7:39967/1‑149 (MQ=255)                                                                                                                                              cgacaagATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGCCGCCACTTTCGCTGCTTCCCGGGGCAGGGCGAAATGGACATGGCCGGTTTCCTGGCGCCGATCCTCGCCACGGGTTACCGTg       <  8:164062‑M2/142‑1 (MQ=255)                                                                                                                                                   agATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGCCGCCACTTTCGCTGCTTCCCGGGGCAGGGCGAAATGGACATGGCCGGTTTCCTGGCGCCGATCCTCGCCACGGGTTACCGTGGCCCg  <  6:74024‑M2/147‑1 (MQ=255)                                                                                                                                                    gATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGCCGCCACTTTCGCTGCTTCCCGGGGCAGGGCGAAATGGACATGGCCGGTTTCCTGGCGCCGATCCTCGCCACgg                <  4:2156‑M2/133‑1 (MQ=255)                                                                                                                                                    gATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGACGCCACTTTCGCTGCTTCCCGGGGCAGGGCGAAATGGACATGGCCGGTTTCCTGGCGCCGATCCTCGCCACgg                >  3:2156‑M2/2‑134 (MQ=255)                                                                                                                                                     |                                                                                                                                                   TGGGGCCGCCACGTCAACACTTACCAGCAAGTGTGGAACCTGGTGCGCCAGGCCGACCACCCGGCACTCGGGGTGATCCTCGACAGCTTCCACACCTTGTCGCTCAAAGGTGACCCCAG‑CGCGATCCGCGACATCCCCGGCGACAAGATCTTCTTCGTGCAAATGGCCGATGCGCCGATCCTGGCCATGGATGTGCTGGAGTGGAGCCGCCACTTTCGCTGCTTCCCGGGGCAGGGCGAAATGGACATGGCCGGTTTCCTGGCGCCGATCCTCGCCACGGGTTACCGTGGCCCG  >  NC_002947/2901330‑2901623

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.