New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3092861 =	43 (0.760)	3 (0.060)	3/246	NT	6.6%	coding (822/939 nt)	PP_2701	LysR family transcriptional regulator
	?	NC_002947	3092943 =	44 (0.820)					coding (904/939 nt)	PP_2701	LysR family transcriptional regulator

GGCGGGCGATAACCCAAGCAACGTCTCACTAGGCATGTACTACCACTTCTGACCCCACGGGGCGGGTCTGCTTGAGCACCTGCCCGCGCAAGCTGTGGAACAGCTCCTGGGCAGGCGCCGTGAGGCTGTGGCGGTCGATGCAGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3093006‑3092861 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagaccCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGTTGCTTGGGTTATCGCCCGCCTGATCCACCGGGGTGCCGGCGTAGGTGACCGACGAGGCGCGCTGGTTGGCGATCATGCCAAGGCGTCCATAAAGGGCCCAGCGG  >  NC_002947/3092943‑3093090                                                                                                                                                                                                                                                                                                        GGCGGGCGATAACCCAAGCAACGTCTCACTAGGCATGTACTACCACTTCTGACCCCACGGGGCGGGTCTGCTTGAGCACCTGCCCGCGCAAGCTGTGGAACAGCTCCTGGGCAGGCGCCGTGAGGCTGTGGCGGTCGATGCAGAC                                                                                                                                                       >  2:255056/1‑145                                                                GGGTCTGCTTGAGCACCTGCCCGCGCAAGCTGTGGAACAGCTCCTGGGCAGGCGCCGTGAGGCTGTGGCGGTCGATGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGTTGCTTGGGTTATCGCCCGCCT                                                                                     >  4:254206/1‑148                                                                 GGTCTGCTTGAGCACCTGCCCGCGCAAGCTGTGGAACAGCTCCTGGGCAGGCGCCGTGAGGCTGTGGCGGTCGATGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGTGACGTTGCTTGGGTTATCGCCCGCCTGA                                                                                   >  7:166979/1‑149                                                                                                           CTGGGCAGGCGCCGTGAGGCTGTGGCGGTCGATGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGTTGCTTGGGTTATCGCCCGCCTGATCCACCGGGGTGCCGGCGTAGGTGACCGACGAGGCGCGCTGG                                         <  3:254206/149‑1                                                                                                                                                  CCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGTTGCTTGGGTTATCGCCCGCCTGATCCACCGGGGTGCCGGCGTAGGTGACCGACGAGGCGCGCTGGTTGGCGATCATGCCAAGGCGTCCATAAAGGGCCCAGCGG  >  3:210477/1‑149                                                                                                                                                  CCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGTTGCTTGGGTTATCGCCCGCCTGATCCACCGGGGTGCCGGCGTAGGTGACCGACGAGGCGCGCTGGTTGGCGATCATGCCAAGGCGTCCATAAAGGGCCCAGCGG  >  5:334354/1‑149                                                                                                                                                  CCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGTTGCTTGGGTTATCGCCCGCCTGATCCACCGGGGTGCCGGCGTAGGTGACCGACGAGGCGCGCTGGTTGGCGATCATGCCAAGGCGTCCATAAAGGGCCCAGCGG  >  5:339728/1‑149                                                                                                                                                  CCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGTTGCTTGGGTTATCGCCCGCCTGATCCACCGGGGTGCCGGCGTAGGTGACCGACGAGGCGCGCTGGTTGGCGATCATGCCAAGGCGTCCATAAAGGGCCCAGCGG  >  6:152423/1‑149                                                                                                                                                                                                                                                                                                        GGCGGGCGATAACCCAAGCAACGTCTCACTAGGCATGTACTACCACTTCTGACCCCACGGGGCGGGTCTGCTTGAGCACCTGCCCGCGCAAGCTGTGGAACAGCTCCTGGGCAGGCGCCGTGAGGCTGTGGCGGTCGATGCAGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3093006‑3092861 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagaccCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGTTGCTTGGGTTATCGCCCGCCTGATCCACCGGGGTGCCGGCGTAGGTGACCGACGAGGCGCGCTGGTTGGCGATCATGCCAAGGCGTCCATAAAGGGCCCAGCGG  >  NC_002947/3092943‑3093090

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.