New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3092861 =	43 (0.760)	3 (0.060)	3/246	NT	6.6%	coding (822/939 nt)	PP_2701	LysR family transcriptional regulator
	?	NC_002947	3092943 =	44 (0.820)					coding (904/939 nt)	PP_2701	LysR family transcriptional regulator

TGATGATGGCGCTGAAGCTGTTGAAGAACACGGAATCGTTGATGACCATCAGCGAACTGGCGGTGGACCAAGGGTTTACCTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGTTGCTTGGGTTATCGCC  >  NC_002947/3092713‑3093002                                                                                                                                                     |                                                                                                                                              ccgctgggccctttatggacgccttggcatgatcgccaaccagcgcgcctcgtcggtcacctacgccggcaccccggtggatcaggcgggcgataacccaagcaacgtctcactaggcatgtactaccacttctgaccccacggggcgg                                                                                                                                               >  6:152423‑M1/149‑149 (MQ=255) ccgctgggccctttatggacgccttggcatgatcgccaaccagcgcgcctcgtcggtcacctacgccggcaccccggtggatcaggcgggcgataacccaagcaacgtctcactaggcatgtactaccacttctgaccccacggggcgg                                                                                                                                               >  5:339728‑M1/149‑149 (MQ=255) ccgctgggccctttatggacgccttggcatgatcgccaaccagcgcgcctcgtcggtcacctacgccggcaccccggtggatcaggcgggcgataacccaagcaacgtctcactaggcatgtactaccacttctgaccccacggggcgg                                                                                                                                               >  5:334354‑M1/149‑149 (MQ=255) ccgctgggccctttatggacgccttggcatgatcgccaaccagcgcgcctcgtcggtcacctacgccggcaccccggtggatcaggcgggcgataacccaagcaacgtctcactaggcatgtactaccacttctgaccccacggggcgg                                                                                                                                               >  3:210477‑M1/149‑149 (MQ=255)    tgatgGCGCTGAAGCTGTTGAAGAACACGGAATCGTTGATGACCATCAGCGAACTGGCGGTGGACCAAGGGTTTACCTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTc                                                                                                                                            <  6:138419/149‑1 (MQ=255)      atgGCGCTGAAGCTGTTGAAGAACACGGAATCGTTGATGACCATCAGCGAACTGGCGGTGGACCAAGGGTTTACCTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTg                                                                                                                                          >  4:125759/1‑149 (MQ=255)        ggCGCTGAAGCTGTTGAAGAACACGGAATCGTTGATGACCATCAGCGAACTGGCGGTGGACCAAGGGTTTACCTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCa                                                                                                                                        >  3:151558/1‑149 (MQ=255)         gcgcTGAAGCTGTTGAAGAACACGGAATCGTTGATGACCATCAGCGAACTGGCGGTGGACCAAGGGTTTACCTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCAt                                                                                                                                       >  4:246896/1‑149 (MQ=255)               aaGCTGTTGAAGAACACGGAATCGTTGATGACCATCAGCGAACTGGCGGTGGACCAAGGGTTTACCTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGAcc                                                                                                                                  <  4:152763/148‑1 (MQ=255)                     ttGAAGAACACGGAATCGTTGATGACCATCAGCGAACTGGCGGTGGACCAAGGGTTTACCTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCcaca                                                                                                                            <  8:126662/148‑1 (MQ=255)                     ttGAAGAACACGGAATCGTTGATGACCATCAGCGAACTGGCGGTGGACCAAGGGTTTACCTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAg                                                                                                                           >  3:214254/1‑149 (MQ=255)                     ttGAAGAACACGGAATCGTTGATGACCATCAGCGAACTGGCGGTGGACCAAGGGTTTACCTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAg                                                                                                                           <  3:246896/149‑1 (MQ=255)                     ttGAAGAACACGGAATCGTTGATGACCATCAGCGAACTGGCGGTGGACCAAGGGTTTACCTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAg                                                                                                                           >  7:284771/1‑149 (MQ=255)                     ttGAAGAACACGGAATCGTTGATGACCATCAGCGAACTGGCGGTGGACCAAGGGTTTACCTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGAAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCTCCACAg                                                                                                                           >  4:292167/1‑149 (MQ=255)                           aaCACGGAATCGTTGATGACCATCAGCGAACTGGCGGTGGACCAAGGGTTTACCTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCAc                                                                                                                     >  6:231596/1‑149 (MQ=255)                                  aaTCGTTGATGACCATCAGCGAACTGGCGGTGGACCAAGGGTTTACCTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGTAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCt                                                                                                              >  7:191050/1‑149 (MQ=255)                                      gTTGATGACCATCAGCGAACTGGCGGTGGACCAAGGGTTTACCTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGcc                                                                                                           >  2:177421/1‑148 (MQ=255)                                      gTTGATGACCATCAGCGAACTGGCGGTGGACCAAGGGTTTACCTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGcc                                                                                                           >  2:171894/1‑148 (MQ=255)                                        ccagcgcgcctcgtcggtcacctacgccggcaccccggtggatcaggcgggcgataacccaagcaacgtctcactaggcatgtactaccacttctgaccccacggggcgGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAg                                                                                                        <  3:254206‑M1/40‑1 (MQ=255)                                         gatgcCCATAAGCGAACTGGCGGTGGACCAAGGGTTTACCTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAg                                                                                                        <  7:139783/148‑1 (MQ=255)                                         gatgaCCATCAGCGAACTGGCGGTGGACCAAGGGTTTACCTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAg                                                                                                        <  8:183322/148‑1 (MQ=255)                                         gatgaCCATCAGCGAACTGGCGGTGGACCAAGGGTTTACCTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAg                                                                                                        <  8:284771/148‑1 (MQ=255)                                                 tCAGCGAACTGGCGGTGGACCAAGGGTTTACCTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTc                                                                                               <  1:177421/149‑1 (MQ=255)                                                 tCAGCGAACTGGCGGTGGACCAAGGGTTTACCTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTc                                                                                               <  1:171894/149‑1 (MQ=255)                                                         cTGGCGGTGGACCAAGGGTTTACCTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCtt                                                                                       <  8:222150/149‑1 (MQ=255)                                                          tGGCGGTGGACCAAGGGTTTACCTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTg                                                                                      >  4:20718/1‑149 (MQ=255)                                                                               ccTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGa                                                                                                      <  4:307604/112‑1 (MQ=255)                                                                               ccTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGa                                                                                                      >  3:307604/1‑112 (MQ=255)                                                                               ccTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCa                                                                  <  8:191050/148‑1 (MQ=255)                                                                                cTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGa                                                                >  1:255056/1‑149 (MQ=255)                                                                                  tcaggcgggcgataacccaagcaacgtcacactaggcatgtactaccacttctgaccccacggggcgGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGAcc                                                              >  7:166979‑M1/68‑149 (MQ=255)                                                                                    aggcgggcgataacccaagcaacgtctcactaggcatgtactaccacttctgaccccacggggcgGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGAccc                                                             >  4:254206‑M1/66‑148 (MQ=255)                                                                                      tATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGt                                                                           <  4:313010/132‑1 (MQ=255)                                                                                      tATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGt                                                                           >  3:313010/1‑132 (MQ=255)                                                                                      tATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCAACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGcc                                                          >  4:213344/1‑149 (MQ=255)                                                                                               cGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTc                                                                                               <  4:71825/103‑1 (MQ=255)                                                                                               cGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGc                                                                   >  8:34835/1‑131 (MQ=255)                                                                                               cGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGc                                                                   <  7:34835/131‑1 (MQ=255)                                                                                                   ttCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAg                                              >  8:336462/1‑148 (MQ=255)                                                                                                       tcgCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTg                                         <  3:20718/149‑1 (MQ=255)                                                                                                         gCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTgg                                        <  7:336462/148‑1 (MQ=255)                                                                                                          ccATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGgta                                      <  5:231596/149‑1 (MQ=255)                                                                                                            aTGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGgtagt                                    <  4:214254/149‑1 (MQ=255)                                                                                                                                   ggATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGTTGCtt             <  3:213344/149‑1 (MQ=255)                                                                                                                                         ccccATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGTTGCTTGGGTTa       <  3:125759/149‑1 (MQ=255)                                                                                                                                           ccATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGCCGTTGCTTGGGTTATc     >  8:90059/1‑149 (MQ=255)                                                                                                                                            cATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGtt                 <  6:364586/136‑1 (MQ=255)                                                                                                                                            cATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGtt                 >  5:364586/1‑136 (MQ=255)                                                                                                                                            cATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGTTGCTTGGGTTATcg    >  3:168598/1‑149 (MQ=255)                                                                                                                                            cATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTACACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGTTGCTTGGGTTATcg    >  6:29626/1‑149 (MQ=255)                                                                                                                                              tCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGTTGCTTGGGTTATcgcc  <  5:29626/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                              TGATGATGGCGCTGAAGCTGTTGAAGAACACGGAATCGTTGATGACCATCAGCGAACTGGCGGTGGACCAAGGGTTTACCTACGGTATCGATTGCGAGTTCGTCGCCATGGCGGTGCAGGAGTTGATTCCGGATTACCCCATCAATCTGGTCTGCATCGACCGCCACAGCCTCACGGCGCCTGCCCAGGAGCTGTTCCACAGCTTGCGCGGGCAGGTGCTCAAGCAGACCCGCCCCGTGGGGTCAGAAGTGGTAGTACATGCCTAGTGAGACGTTGCTTGGGTTATCGCC  >  NC_002947/3092713‑3093002

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.