New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3214224	49 (0.860)	3 (0.060)	3/248	NT	5.9%	coding (139/3129 nt)	mexD	multidrug RND transporter MexD
	?	NC_002947	= 3214263	49 (0.910)					coding (178/3129 nt)	mexD	multidrug RND transporter MexD

CGAGGGAAGTGAGATGTCCAGGTTCTTCATCCATCGCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3214073‑3214224 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaccgACTCCACCATGACCTTGGCCGAAGCGCCGGGGTAGGAGGCGGTGATGGAGATCTGCGGTGGCGCCACGTTGGGGTACTGGGCCACGGGCAAGGATGGAATCACCAGCAAACCGGCCAGTGAAATGAACAACGCCACGACCCAGG  <  NC_002947/3214263‑3214120                                                                                                                                                                                                                                                                                                          CGAGGGAAGTGAGATGTCCAGGTTCTTCATCCATCGCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATC                                                                                                                                                      <  1:181781/148‑1                                            TTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGACTCCACCATGACCTTGGCCGAAGCGCCGGGGTAGGAGGC                                                                                                          >  5:232644/1‑149                                                 CTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGCAGATTAAACCAAAGTGGCGCCAACGCAGATCTCCATCACCGACTCCACCATGACCTTGGCCGAAGCGCCGGGGTAGGAGGCGGTGA                                                                                                     <  6:95771/149‑1                                                    GGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGACTCCACCATGACCTTGGCCGAAGCGCCGGGGTAGGAGGCGGTGATG                                                                                                   <  6:232644/148‑1                                                                                                                                                   TCACCGACTCCACCATGACCTTGGCCGAAGCGCCGGGGTAGGAGGCGGTGATGGAGATCTGCGGTGGCGCCACGTTGGGGTACTGGGCCACGGGCAAGGATGGAATCACCAGCAAACCGGCCAGTGAAATGAACAACGCCACGACCCAG   >  4:25581/1‑149                                                                                                                                                    CACCGACTCCACCATGACCTTGGCCGAAGCGCCGGGGTAGGAGGCGGTGATGGAGATCTGCGGTGGCGCCACGTTGGGGTACTGGGCCACGGGCAAGGATGGAATCACCAGCAAACCGGCCAGTGAAATGAACAACGCCACGACCCAGG  >  5:205516/1‑149                                                                                                                                                                                                                                                                                                          CGAGGGAAGTGAGATGTCCAGGTTCTTCATCCATCGCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3214073‑3214224 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaccgACTCCACCATGACCTTGGCCGAAGCGCCGGGGTAGGAGGCGGTGATGGAGATCTGCGGTGGCGCCACGTTGGGGTACTGGGCCACGGGCAAGGATGGAATCACCAGCAAACCGGCCAGTGAAATGAACAACGCCACGACCCAGG  <  NC_002947/3214263‑3214120

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.