New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3379338	51 (0.900)	6 (0.110)	6/242	NT	10.8%	coding (811/972 nt)	tnpS	cointegrate resolution protein S
	?	NC_002947	= 3379373	52 (0.990)					coding (776/972 nt)	tnpS	cointegrate resolution protein S

AGAAGCTGAAAGTTGACCCAAAGGGCCAGCATGAAGCTCAAGGACAGGTTTAGCTGCAAGGCCGCCAAAGGATATGGCGGGGTCGATGTAGCGCATGGCAGACTTGATGTCTTTCCAGCCTACATAGGTCATCAAGGCCTTGAGATCCCAGCCATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3379183‑3379338 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagccattCGCTGCGCCGTGGCTTCGCCTCTTGGGCCACGGCAAATGGCTGGGATCTCAAGGCCTTGATGACCTATGTAGGCTGGAAAGACATCAAGTCTGCCATGCGCTACATCGACCCCGCCATATCCTTTGGCGGCCTTGCAGCTAAACCTG  <  NC_002947/3379373‑3379227                                                                                                                                                                                                                                                                                                                 AGAAGCTGAAAGTTGACCCAAAGGGCCAGCATGAAGCTCAAGGACAGGTTTAGCTGCAAGGCCGCCAAAGGATATGGCGGGGGCGATGTAGCGCATGGCAGACTTGATGTCTTTCCAGCCTACATAGGTCATCAAGGCCTTGAGATCC                                                                                                                                                             <  3:9044/148‑1  GAAGCTGAAAGTTGACCCAAAGGGCCAGCATGAAGCTCAAGGACAGGTTTAGCTGCAAGGCCGCCAAAGGATATGGCGGGGTCGATGTAGCGCATGGCAGACTTGATGTCTTTCCAGCCTACATAGGTCATCAAGGCCTTGAGATCCCA                                                                                                                                                           <  3:94757/149‑1  GAAGCTGAAAGTTGACCCAAAGGGCCAGCATGAAGCTCAAGGACAGGTTTAGCTGCAAGGCCGCCAAAGGATATGGCGGGGTCGATGTAGCGCATGGCAGACTTGATGTCTTTCCAGCCTACATAGGTCATCAAGGCCGTGAGATCC                                                                                                                                                             >  4:294866/1‑147                    AAAGGGCCAGCATGAAGCTCAAGGACAGGTTTAGCTGCAAGGCCGCCAAAGGATATGGCGGGGTCGATGTAGCGCATGGCAGACTTGATGTCTTTCCAGCCTACATAGGTCATCAAGGCCTTGAGATCCCAGCCATTCGCTGCGCCGTG                                                                                                                                         >  3:234670/1‑149                                    GCTCAAGGACAGGTTTAGCTGCAAGGCCGCCAAAGGATATGGCGGGGTCGATGTAGCGCATGGCAGACTTGATGTCTTTCCAGCCTACATAGGTCATCAAGGCCTTGAGATCCCAGCCATTCGCTGCGCCGTGGCTTCGCCTCTTGGGC                                                                                                                         >  3:145958/1‑149                                              AGGTTTAGCTGCAAGGCCGCCAAAGGATATGGCGGGGTCGATGTAGCGCATGGCAGACTTGATGTCTTTCCAGCCTACATAGGTCATCAAGGCCTTGAGATCCCAGCCATTCGCTGCGCCGTGGCTTCGCCTCTTGGGCCACGGCAAAT                                                                                                               <  4:234670/149‑1                                                   TAGCTGCAAGGCCGCCAAAGGATATGGCGGGGTCGATGTAGCGCATGGCAGACTTGATGTCTTTCCAGCCTACATAGGTCATCAAGGCCTTGAGATCCCAGCCATTCGCTGCGCCGTGGCTTCGCCTCTTGGGCCACGACAAATGGCT                                                                                                           <  4:145958/148‑1                                                                                                             GTCTTTCCAGCCTACATAGGTCATCAAGGCCTTGAGATCCCAGCCATTCGCTGCGCCGTGGCTTCGCCTCTTGGGCCACGGCAAATGGCTGG                                                                                                         <  1:43707/92‑1                                                                                                             GTCTTTCCAGCCTACATAGGTCATCAAGGCCTTGAGATCCCAGCCATTCGCTGCGCCGTGGCTTCGCCTCTTGGGCCACGGCAAATGGCTGG                                                                                                         >  2:43707/1‑92                                                                                                                                                        CCATTCGCTGCGCCGTGGCTTCGCCTCTTGGGCCACGGCAAATGGCTGGGATCTCAAGGCCTTGATGACCTATGTAGGCTGGAAAGACATCAAGTCTGCCATGCGCTACATCGACCCCGCCATATCCTTTGGCGGCCTTGCAGCTAAAC     >  8:337007/1‑149                                                                                                                                                           TTCGCTGCGCCGTGGCTTCGCCTCTTGGGCCACGGCAAATGGCTGGGATCTCAAGGCCTTGATGACCTATGTAGGCTGGAAAGACATCAAGTCTGCCATGCGCTACATAGACCCCGCCATATCCTTTGGCGGCCTTGCAGCTAAACCTG  >  2:63160/1‑149                                                                                                                                                           TTCGCTGCGCCGTGGCTTCGCCTCTTGGGCCACGGCAAATGGCTGAGATCTCAAGGCCTTGATGACCTATGTAGGCTGGAAAGACATCAAGTCTGCCATGCGCTACATCGACCCCGCCATATCCTTTGGCGGCCTTGCAGCTAAACCTG  >  4:295413/1‑149                                                                                                                                                                                                                                                                                                                 AGAAGCTGAAAGTTGACCCAAAGGGCCAGCATGAAGCTCAAGGACAGGTTTAGCTGCAAGGCCGCCAAAGGATATGGCGGGGTCGATGTAGCGCATGGCAGACTTGATGTCTTTCCAGCCTACATAGGTCATCAAGGCCTTGAGATCCCAGCCATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3379183‑3379338 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagccattCGCTGCGCCGTGGCTTCGCCTCTTGGGCCACGGCAAATGGCTGGGATCTCAAGGCCTTGATGACCTATGTAGGCTGGAAAGACATCAAGTCTGCCATGCGCTACATCGACCCCGCCATATCCTTTGGCGGCCTTGCAGCTAAACCTG  <  NC_002947/3379373‑3379227

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.