New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3379338	51 (0.900)	6 (0.110)	6/242	NT	10.8%	coding (811/972 nt)	tnpS	cointegrate resolution protein S
	?	NC_002947	= 3379373	52 (0.990)					coding (776/972 nt)	tnpS	cointegrate resolution protein S

AAGTTGACCCAAAGGGCCAGCATGAAGCTCAAGGACAGGTTTAGCTGCAAGGCCGCCAAAGGATATGGCGGGGTCGATGTAGCGCATGGCAGACTTGATGTCTTTCCAGCCTACATAGGTCATCAAGGCCTTGAGATCCCAGCCATTTGCCGTGGCCCAAGAGGCGAAGCCACGGCGCAGCGAATGGCTGGTGTACAGCTCGGCCGATATACCGGCGCGCTGTAGGATCTGGCGCAACAAGCTGATCAGGCTGCCGGGATGCAAGGCCTCGTCGCTCAGGTGCCCCCAGCGATC  >  NC_002947/3379192‑3379485                                                                                                                                                   |                                                                                                                                                    aaGTTGACCCAAAGGGCCAGCATGAAGCTCAAGGACAGGTTTAGCTGCAAGGCCGCCAAAGGATATGGCGGGGTCGATGTAGCGCATGGCAGACTTGATGTCTTTCCAGCCTACATAGGTCATCAAGGCCTTGAGATCCCAGCCATTTg                                                                                                                                                   <  8:123956/149‑1 (MQ=255)       aCCCAAAGGGCCAGCATGAAGCTCAAGGACAGGTTTAGCTGCAAGGCCGCCAAAGGATATGGCGGGGTCGATGTAGCGCATGGCAGACTTGATGTCTTTCCAGCCTACATAGGTCATCAAGGCCTTGAGATCCCAGCCATTTGCCGTgg                                                                                                                                             <  4:255204/149‑1 (MQ=255)         ccAAAGGGCCAGCATGAAGCTCAAGGACAGGTTTAGCTGCAAGGCCGCCAAAGGATATGGCGGGGTCGATGTAGCGCATGGCAGACTTGATGTCTTTCCAGCCTACATAGGTCATCAAGGCCTTGAGATCCCAGCCATTTGCCGt                                                                                                                                               <  4:236373/145‑1 (MQ=255)         ccAAAGGGCCAGCATGAAGCTCAAGGACAGGTTTAGCTGCAAGGCCGCCAAAGGATATGGCGGGGTCGATGTAGCGCATGGCAGACTTGATGTCTTTCCAGCCTACATAGGTCATCAAGGCCTTGAGATCCCAGCCATTTGCCGt                                                                                                                                               >  3:236373/1‑145 (MQ=255)         ccAAAGGGCCAGCATGAAGCTCAAGGACAGGTTTAGCTGCAAGGCCGCCAAAGGATATGGCGGGGTCGATGTAGCGCATGGCAGACTTGATGTCTTTCCAGCCTACATAGGTCATCAAGGCCTTGAGATCCCAGCCATTTGCCGTGGcc                                                                                                                                           >  3:213568/1‑149 (MQ=255)          cAAAGGGCCTGCATGAAGCTCAAGGACTGGTTTATGTGCAAGGCCGCCAAAGGATATGGCGGTGTCGATGTAGCGCTTGGCAGACTTGATGTCTTTCCAGCCTACATAGGTCATCAAGGCCTTGAGATCCCATCCATTTGCCGTGGccc                                                                                                                                          <  2:294011/149‑1 (MQ=255)           aaaGGGCCAGCATGAAGCTCAAGGACAGGTTTAGCTGCAAGGCCGCCAAAGGATATGGCGGGGTCGATGTAGCGCATGGCAGACTTGATGTCTTTCCAGCCTACATAGGTCATCAAGGCCTTGAGATCCCAGCCATTcgctgcgccgtg                                                                                                                                         >  3:234670‑M1/1‑137 (MQ=255)                         aaGCTCAAGGACAGGTTTAGCTGCAAGGCCGCCAAAGGATATGGCGGGGTCGATGTAGCGCATGGCAGACTTGATGTCTTTCCAGCCTACATAGGTCATCAAGGCCTTGAGATCCCAGCCATTTGCCGTGGCCCAAGAGGCGAAGCCAc                                                                                                                           >  7:337007/1‑149 (MQ=255)                           gCTCAAGGACAGGTTTAGCTGCAAGGCCGCCAAAGGATATGGCGGGGTCGATGTAGCGCATGGCAGACTTGATGTCTTTCCAGCCTACATAGGTCATCAAGGCCTTGAGATCCCAGCCATTcgctgcgccgtggcttcgcctcttgggc                                                                                                                         >  3:145958‑M1/1‑121 (MQ=255)                               aaGGACAGGTTTAGCTGCAAGGCCGCCAAAGGATATGGCGGGGTCGATGTAGCGCATGGCAGACTTGATGTCTTTCCAGCCTACATAGGTCATCAAGGCCTTGAGATCCCAGCCATTTGCCGTGGCCCAAGAGGCGAAGCCACGgcg                                                                                                                       >  7:254622/1‑147 (MQ=255)                                    cAGGTTTAGCTGCAAGGCCGCCAAAGGATATGGCGGGGTCTATGTAGCGCATGGCAGACTTGATGTCTTTCCAGCCTACATAGGTCATCAAGGCCTTGAGATCCCAGCCATTTGCCGTGGCCCAAGAGGCGAAGCCACGGCGCAGCGaa                                                                                                                >  2:63160‑M2/1‑147 (MQ=255)                                    cAGGTTTAGCTGCAAGGCCGCCAAAGGATATGGCGGGGTCGATGTAGCGCATGGCAGACTTGATGTCTTTCCAGCCTACATAGGTCATCAAGGCCTTGAGATCTCAGCCATTTGCCGTGGCCCAAGAGGCGAAGCCACGGCGCAGCGaa                                                                                                                >  4:295413‑M2/1‑147 (MQ=255)                                     aGGTTTAGCTGCAAGGCCGCCAAAGGATATGGCGGGGTCGATGTAGCGCATGGCAGACTTGATGTCTTTCCAGCCTACATAGGTCATCAAGGCCTTGAGATCCCAGCCATTcgctgcgccgtggcttcgcctcttgggccacggcaaat                                                                                                               <  4:234670‑M1/149‑39 (MQ=255)                                       gTTTAGCTGCAAGGCCGCCAAAGGATATGGCGGGGTCGATGTAGCGCATGGCAGACTTGATGTCTTTCCAGCCTACATAGGTCATCAAGGCCTTGAGATCCCAGCCATTTGCCGTGGCCCAAGAGGCGAAGCCACGGCGCAGCGaatgg                                                                                                             >  8:337007‑M2/1‑144 (MQ=255)                                          tAGCTGCAAGGCCGCCAAAGGATATGGCGGGGTCGATGTAGCGCATGGCAGACTTGATGTCTTTCCAGCCTACATAGGTCATCAAGGCCTTGAGATCCCAGCCATTcgctgcgccgtggcttcgcctcttgggccacgacaaatggct                                                                                                           <  4:145958‑M1/148‑43 (MQ=255)                                             cTGCAAGGCCGCCAAAGGATATGGCGGGGTCGATGTAGCGCATGGCAGACTTGATGTCTTTCCAGCCTACATAGGTCATCAAGGCCTTGAGATCCCAGCCATTTGCCGTGGCCCAAGAGGCGAAGCCACGGCGCAGCGAATGGCTGgtg                                                                                                       >  6:219367/1‑149 (MQ=255)                                             cTGCAAGGCCGCCAAAGGATATGGCGGGGTCGATGTAGCGCATGGCAGACTTGATGTCTTTCCAGCCTACATAGGTCATCAAGGCCTTGAGATCCCAGCCATTTGCCGTGGCCCAAGAGGCGAAGCCACGGCGCAGCGAATGGCTGgtg                                                                                                       >  8:53244/1‑149 (MQ=255)                                               gCAAGGCCGCCAAAGGATATGGCGGGGTCGATGTAGCGCATGGCAGACTTGATGTCTTTCCAGCCTACATAGGTCATCAAGGCCTTGAGATCCCAGCCATTTGCCGTGGCCCAAGAGGCGAAGCCACGGCGCAGCGAATGGCTGGTGTa                                                                                                     >  3:133569/1‑149 (MQ=255)                                                  aGGCCGCCAAAGGATATGGCGGGGTCGATGTAGCGCATGGCAGACTTGATGTCTTTCCAGCCTACATAGGTCATCAAGGCCTTGAGATCCCAGCCATTTGCCGTGGCCCAAGAGGCGAAGCCACGGCGCAGCGAATGGCTGGTGTACAg                                                                                                  >  8:103824/1‑149 (MQ=255)                                                  aGGCCGCCAAAGGATATGGCGGGGTCGATGTAGCGCATGGCAGACTTGATGTCTTTCCAGCCTACATAGGTCATCAAGGCCTTGAGATCCCAGCCATTTGCCGTGGCCCAAGAGGCGAAGCCACGGCGCAGCGAATGGCTGGTGTACAg                                                                                                  >  6:71765/1‑149 (MQ=255)                                                       gccAAAGGATATGGCGGGGTCGATGTAGCGCATGGCAGACTTGATGTCTTTCCAGCCTACATAGGTCATCAAGGCCTTGAGATCCCAGCCATTTGCCGTGGCCCAAGAGGCGAAGCCACGGCGCAGCGAATGGCTGgtg                                                                                                       >  6:294679/1‑139 (MQ=255)                                                       gccAAAGGATATGGCGGGGTCGATGTAGCGCATGGCAGACTTGATGTCTTTCCAGCCTACATAGGTCATCAAGGCCTTGAGATCCCAGCCATTTGCCGTGGCCCAAGAGGCGAAGCCACGGCGCAGCGAATGGCTGgtg                                                                                                       <  5:294679/139‑1 (MQ=255)                                                       gccAAAGGATATGGCGGGGTCGATGTAGCGCATGGCAGACTTGATGTCTTTCCAGCCTACATAGGTCATCAAGGCCTTGAGATCCCAGCCATTTGCCGTGGCCCAAGAGGCGAAGCCACGGCGCAGCGAATGGCTGGTGTACAGCTCgg                                                                                             <  5:108032/149‑1 (MQ=255)                                                         cAAAGGATATGGCGGGGTCGATGTAGCGCATGGCAGACTTGATGTCTTTCCAGCCTACATAGGTCATCAAGGCCTTGAGATCCCAGCCATTTGCCGTGGCCCAAGAGGCGAAGCCACGGCGCAGCGAATGGCTGGTGTACAGCTCGGcc                                                                                           >  5:127890/1‑149 (MQ=255)                                                                          tCGATGTAGCGCATGGCAGACTTGATGTCTTTCCAGCCTACATAGGTCATCAAGGCCTTGAGATCCCAGCCATTTGCCGTGGCCCAAGAGGCGAAGCCACGGCGCAGCGAATGGCTGGTGTACAGCTCGGCCGATATAc                                                                                    >  6:353224/1‑139 (MQ=255)                                                                          tCGATGTAGCGCATGGCAGACTTGATGTCTTTCCAGCCTACATAGGTCATCAAGGCCTTGAGATCCCAGCCATTTGCCGTGGCCCAAGAGGCGAAGCCACGGCGCAGCGAATGGCTGGTGTACAGCTCGGCCGATATAc                                                                                    <  5:353224/139‑1 (MQ=255)                                                                             aTGTAGCGCATGGCAGACTTGATGTCTTTCCAGCCTACATAGGTCATCAAGGCCTTGAGATCCCAGCCATTTGCCGTGGCCCAAGAGGCGAAGCCACGGCGCAGCGAATGGCTGGTGTACAGCTCGGCCGATATACCGGCGCGCTGTAg                                                                       <  6:127890/149‑1 (MQ=255)                                                                             aTGTAGCGCATGGCAGACTTGATGTCTTTCCAGCCTACATAGGTCATCAAGGCCTTGAGATCCCAGCCATTTGCCGTGGCCCAAGAGGCGAAGCCACGGCGCAGCGAATGGCTGGTGTACAGCTCGGCCGATATACCGGCGCGCTGTAg                                                                       <  4:213568/149‑1 (MQ=255)                                                                                tAGCGCATGGCAGACTTGATGTCTTTCCAGCCTACATAGGTCATCAAGGCCTTGAGATCCCAGCCATTTGCCGTGGCCCAAGAGGCGAAGCCACGGCGCAGCGAATGGCTGGTGTACAGCTCGGCCGATATACCGGCGCGCTGTAGGa                                                                     <  4:133569/148‑1 (MQ=255)                                                                                    gcATGGCAGACTTGATGTCTTTCCAGCCTACATAGGTCATCAAGGCCTTGAGATCCCAGCCATTTGCCGTGGCCCAAGAGGCGAAGCCACGGCGCAGCGAATGGCTGGTGTACAGCTCGGCCGATATACCGGCGCGCTGTAGGATCTgg                                                                >  2:132222/1‑149 (MQ=255)                                                                                    gcATGGCAGACTTGATGTCTTTCCAGCCTACATAGGTCATCAAGGCCTTGAGATCCCAGCCATTTGCCGTGGCCCAAGAGGCGAAGCCACGGCGCAGCGAATGGCTGGTGTACAGCTCGGCCGATATACCGGCGCGCTGTAGGATCTgg                                                                >  6:50144/1‑149 (MQ=255)                                                                                         gCAGACTTGATGTCTTTCCAGCCTACATAGGTCATCAAGGCCTTGAGATCCCAGCCATTTACCGTGGCCCAAGAGGCGAAGCCACGGCGCAGCGAATGGCTGGTGTACAGCTCGGCCGATATACCGGCGCGCTGTAGGa                                                                     <  6:118618/139‑1 (MQ=255)                                                                                         gCAGACTTGATGTCTTTCCAGCCTACATAGGTCATCAAGGCCTTGAGATCCCAGCCATTTACCGTGGCCCAAGAGGCGAAGCCACGGCGCAGCGAATGGCTGGTGTACAGCTCGGCCGATATACCGGCGCGCTGTAGGa                                                                     >  5:118618/1‑139 (MQ=255)                                                                                            gACTTGATGTCTTTCCAGCCTACATAGGTCATCAAGGCCTTGAGATCCCAGCCATTTGCCGTGGCCCAAGAGGCGAAGCCACGGCGCAGCGAATGGCTGGTGTACAGCTCGGCCGATATACCGGCGCGCTGTAGGATCTGGCGcaacaa                                                        <  1:132222/149‑1 (MQ=255)                                                                                                  aTGTCTTTCCAGCCTACATCGGTCATCAAGGCCTTGAGATCCCAGCCATTTGCCGTGGCCCAAGAGGCGAAGCCACGGCGCAGCGAATGGCTGGTGTACAGCTCGGCCGATATACCGGCGCGCTGTAGGATCTGGCGCAACAAGCTGa                                                   <  5:219367/148‑1 (MQ=255)                                                                                                    gTCTTTCCAGCCTACATAGGTCATCAAGGCCTTGAGATCCCAGCCATTcgctgcgccgtggcttcgcctcttgggccacggcaaatggctgg                                                                                                         <  1:43707‑M1/92‑45 (MQ=255)                                                                                                    gTCTTTCCAGCCTACATAGGTCATCAAGGCCTTGAGATCCCAGCCATTcgctgcgccgtggcttcgcctcttgggccacggcaaatggctgg                                                                                                         >  2:43707‑M1/1‑48 (MQ=255)                                                                                                    gTCTTTCCAGCCTACATAGGTCATCAAGGCCTTGAGATCCCAGCCATTTGCCGTGGCCCAAGAGGCGAAGCCACGGCGCAGCGAATGGCTGGTGTACAGCTCGGCCGATATACCGGCGCGCTg                                                                          >  4:252751/1‑123 (MQ=255)                                                                                                    gTCTTTCCAGCCTACATAGGTCATCAAGGCCTTGAGATCCCAGCCATTTGCCGTGGCCCAAGAGGCGAAGCCACGGCGCAGCGAATGGCTGGTGTACAGCTCGGCCGATATACCGGCGCGCTg                                                                          <  3:252751/123‑1 (MQ=255)                                                                                                      cTTTCCAGCCTACATAGGTCATCAAGGCCTTGAGATCCCAGCCATTTGCCGTGGCCCAAGAGGCGAAGCCACGGCGCAGCGAATGGCTGGTGTACAGCTCGGCCGATATACCGGCGCGCTGTAGGATCTGGCGCAACAAGCTGATCAgg                                              >  5:35295/1‑149 (MQ=255)                                                                                                        ccatgcgcTACATAGGTCATCAAGGCCTTGAGATCCCAGCCATTTGCCGTGGCCCAAGAGGCGAAGCCACGGCGCAGCGAATGGCTGGTGTACAGCTCGGCCGATATACCGGCGCGCTGTAGGATCTGGCGCAACAAGCTGATCAg                                               <  7:217673/139‑1 (MQ=255)                                                                                                         tCCAGCCTACATAGGTCATCAAGGCCTTGAGATCCCAGCCATTTGCCGTGGCCCAAGAGGCGAAGCCACGGCGCAGCGAATGGCTGGTGTACAGCTCGGCCGATATACCGGCGCGCTGTAGGATCTGGCGCAACAAGCTGATCAGGCt                                            <  7:103824/148‑1 (MQ=255)                                                                                                         tCCAGCCTACATAGGTCATCAAGGCCTTGAGATCCCAGCCATTTGCCGTGGCCCAAGAGGCGAAGCCACGGCGCAGCGAATGGCTGGTGTACAGCTCGGCCGATATACCGGCGCGCTGTAGGATCTGGCGCAACAAGCTGATCAGGCTg                                           >  5:122505/1‑149 (MQ=255)                                                                                                                  cATAGGTCATCAAGGCCTTGAGGTCCCAGCAATTTGCCGTGGCCCAAGAGGCGAAGCCACGGCGCAGCGAATGGCTGGTGTACAGCTCGGCCGATATACCGGCGCGCTGTAGGATCTGGCGCAACAAGCTGATCAGGCTGCCGGGATg                                   >  7:55273/1‑148 (MQ=255)                                                                                                                  cATAGGTCATCAAGGCCTTGAGATCCCAGCCATTTGCCGTGGCCCAAGAGGCGAAGCCACGGCGCAGCGAATGGCTGGTGTACAGCTCGGCCGATATACCGGCGCGCTGTAGGATCTGGCGCAACAAGCTGa                                                   <  3:258244/132‑1 (MQ=255)                                                                                                                  cATAGGTCATCAAGGCCTTGAGATCCCAGCCATTTGCCGTGGCCCAAGAGGCGAAGCCACGGCGCAGCGAATGGCTGGTGTACAGCTCGGCCGATATACCGGCGCGCTGTAGGATCTGGCGCAACAAGCTGa                                                   >  4:258244/1‑132 (MQ=255)                                                                                                                      ggTCATCAAGGCCTTGAGATCCCAGCCATTTGCCGTGGCCCAAGAGGCGAAGCCACGGCGCAGCGAATGGCTGGTGTAc                                                                                                    <  8:137419/79‑1 (MQ=255)                                                                                                                      ggTCATCAAGGCCTTGAGATCCCAGCCATTTGCCGTGGCCCAAGAGGCGAAGCCACGGCGCAGCGAATGGCTGGTGTACAGCTCGGCCGATATACCGGCGCGCTGTAGGATCTGGCGCAACAAGCTGATCAGGCTGCCGGGATGCAAg                               <  8:55273/148‑1 (MQ=255)                                                                                                                      ggTCATCAAGGCCTTGAGATCCCAGCCATTTGCCGTGGCCCAAGAGGCGAAGCCACGGCGCAGCGAATGGCTGGTGTACAGCTCGGCCGATATACCGGCGCGCTGTAGGATCTGGCGCAACAAGCTGATCAGGCTGCCGGGATGCAAg                               <  5:71765/148‑1 (MQ=255)                                                                                                                       gacatcaAGGCCTTGAGATCCCAGCCATTTGCCGTGGCCCAAGAGGCGAAGCCACGGAGCAGCGAATGCCTGGTGTACAGCTCGCCCGATATACCGGCGCGATGTAGGATCTCGCGCAACAACCTGATCAGGCTGCCGGGAAGCAAGGc                             >  5:162022/3‑149 (MQ=255)                                                                                                                       gTCATCAAGGCCTTGAGATCCCAGCCATTTGCCGTGGCCCAAGAGGCGAAGCCACGGCGCAGCGAATGGCTGGTGTACAGCTCGGCCGATATACCGGCGCGCTGTAGGATCTGGCGCAACAAGCTGATCAGGCTGCCGGGATGCAAGGc                             <  8:254622/149‑1 (MQ=255)                                                                                                                          atcaAGGCCTTGAGATCCCAGCCATTTGCCGTGGCCCAAGAGGCGAAGCCACGGCGCAGCGAATGGCTGGTGTACAGCTCGGCCGATATACCGGCGCGCTGTAGGATCTGGCGCAACAAGCTGATCAGGCTGCCGGGATGCAAGGCCtc                          >  8:225103/1‑149 (MQ=255)                                                                                                                             aaGGCCTTGAGATCCCAGCCATTTGCCGTGGCCCAAGAGGCGAAGCCACGGCGCAGCGAATGGCTGGTGTACAGCTCGGCCGATATACCGGCGCGCTGTAGGATCTGGCGCAACAAGCTGATc                                                 <  3:195373/123‑1 (MQ=255)                                                                                                                             aaGGCCTTGAGATCCCAGCCATTTGCCGTGGCCCAAGAGGCGAAGCCACGGCGCAGCGAATGGCTGGTGTACAGCTCGGCCGATATACCGGCGCGCTGTAGGATCTGGCGCAACAAGCTGATc                                                 >  4:195373/1‑123 (MQ=255)                                                                                                                             aaGGCCTTGAGATCCCAGCCATTTGCCGTGGCCCAAGAGGCGAAGCCACGGCGCAGCGAATGGCTGGTGTACAGCTCGGACGATATACCGGCGCGCTGTAGGATCTGGCGCAACAAGCTGATCAGGCTGCCGGGATGCAAGGCCtcgtc                       >  6:16188/1‑149 (MQ=255)                                                                                                                                      agttCCCAGCGATTTGCCTGGGCCCAAGAGGCGATGGCTGGGCGGAGCGAATGGCTGGTGTACAGCTCGGCCGATATAGGGGCGCGATGTAGGATCTGGCGCTACAAGCTGATCAGGCTGCCGGGATGGTAGGGCTCGTCGCTCTGGt               <  6:162022/145‑1 (MQ=255)                                                                                                                                          cccAGCCATTTGCCGTGGCCCAAGAGGCGAAGCCACGGCGCAGCGAATGGCTGGTGTACAGCTCGGCCGATATACCGGCGCGCTGTAGGATCTGGCGCAACAAGCTGATCa                                                <  5:48058/111‑1 (MQ=255)                                                                                                                                          cccAGCCATTTGCCGTGGCCCAAGAGGCGAAGCCACGGCGCAGCGAATGGCTGGTGTACAGCTCGGCCGATATACCGGCGCGCTGTAGGATCTGGCGCAACAAGCTGATCa                                                >  6:48058/1‑111 (MQ=255)                                                                                                                                           ccAGCCATTTGCCGTGGCCCAAGAGGCGAAGCCACGGCGCAGCGaatggctgggatctcaaggccttgatgacctatgtaggctggaaagac                                                                  >  2:43707‑M2/1‑44 (MQ=255)                                                                                                                                           ccAGCCATTTGCCGTGGCCCAAGAGGCGAAGCCACGGCGCAGCGaatggctgggatctcaaggccttgatgacctatgtaggctggaaagac                                                                  <  1:43707‑M2/92‑49 (MQ=255)                                                                                                                                           ccAGCCATTTGCCGTGGCCCAAGAGGCGAAGCCACGGCGCAGCGAATGGCTGGTGTACAGCTCGGCCGATATACCGGCGCGCTGTAGGATCTGGCGCAACAAGCTGATCAGGCTGCCGGGATGCAAGGCCTCGTCGCTCAGGTTcccc          <  4:9752/148‑1 (MQ=255)                                                                                                                                           ccAGCCATTTGCCGTGGCCCAAGAGGCGAAGCCACGGCGCAGCGAATGGCTGGTGTACAGCTCGGCCGATATACCGGCGCGCTGTAGGATCTGGCGCAACAAGCTGATCAGGCTGCCGGGATGCAAGGCCTCGTCGCTCAGGTGcccc          >  1:351087/1‑148 (MQ=255)                                                                                                                                             aGCCATTTGTCGTGGCCCAAGAGGCGAAGCCACGGCGCAGCGaatggctgggatctcaaggccttgatgacctatgtaggctggaaagacatcaagtctgccatgcgctacatcgaccccgccatatcctttggcggccttgcagcta        <  4:145958‑M2/148‑107 (MQ=255)                                                                                                                                             aGCCATTTGCCGTGGCCCAAGAGGCGAAGCCACGGCGCAGCGAATGGCTGGTGTACAGCTCGGCCGATATACCGGCGAGCTGTAGGATCTGGCGCAACAAGCTGATCAGGCTTCCGGTATGCAACGCCTCGTCGCTCAGGTGCCCCCAg       >  6:368319/1‑149 (MQ=255)                                                                                                                                               ccATTcgctgcgccgtggcttcgcctcttgggccacggcaaatggctgggatctcaaggccttgatgacctatgtaggctggaaagacatcaagtctgccatgcgctacatcgaccccgccatatcctttggcggccttgcagctaaac     >  8:337007‑M1/1‑5 (MQ=255)                                                                                                                                                 aTTTGCCGTGGCCCAAGAGGCGAAGCCACGGCGCAGCGaatggctgggatctcaaggccttgatgacctatgtaggctggaaagacatcaagtctgccatgcgctacatcgaccccgccatatcctttggcggccttgcagctaaacct   <  4:234670‑M2/149‑112 (MQ=255)                                                                                                                                                  ttcgctgcgccgtggcttcgcctcttgggccacggcaaatggctgggatctcaaggccttgatgacctatgtaggctggaaagacatcaagtctgccatgcgctacatagaccccgccatatcctttggcggccttgcagctaaacctg  >  2:63160‑M1/1‑2 (MQ=255)                                                                                                                                                  ttcgctgcgccgtggcttcgcctcttgggccacggcaaatggctgagatctcaaggccttgatgacctatgtaggctggaaagacatcaagtctgccatgcgctacatcgaccccgccatatcctttggcggccttgcagctaaacctg  >  4:295413‑M1/1‑2 (MQ=255)                                                                                                                                                   |                                                                                                                                                    AAGTTGACCCAAAGGGCCAGCATGAAGCTCAAGGACAGGTTTAGCTGCAAGGCCGCCAAAGGATATGGCGGGGTCGATGTAGCGCATGGCAGACTTGATGTCTTTCCAGCCTACATAGGTCATCAAGGCCTTGAGATCCCAGCCATTTGCCGTGGCCCAAGAGGCGAAGCCACGGCGCAGCGAATGGCTGGTGTACAGCTCGGCCGATATACCGGCGCGCTGTAGGATCTGGCGCAACAAGCTGATCAGGCTGCCGGGATGCAAGGCCTCGTCGCTCAGGTGCCCCCAGCGATC  >  NC_002947/3379192‑3379485

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.