New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3451460 =	49 (0.860)	4 (0.070)	4/246	NT	7.5%	coding (1987/2478 nt)	PP_3069	outer membrane autotransporter
	?	NC_002947	3451513 =	52 (0.970)					coding (1934/2478 nt)	PP_3069	outer membrane autotransporter

TCAAAGGGTTTGCCCTGGCCGTTCACGACCGCAGCGTGGGCGACCTGAAGCTCGATGGCGATAGCGTGGGCACCTACTGGACGCTGGTCGGGCCACAGGGCGCGTACCTGGACGCGGTGTTGCAATACACCCGCCTGGATGGCCGCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3451609‑3451460 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgcccTGTGGCCCGACCAGCGTCCAGTAGGTGCCCACGCTATCGCCATCGAGCTTCAGGTCGCCCACGCTGCGGTCGTGAACGGCCAGGGCAAACCCTTTGACGTCGGCGTCCAGGCGGCTATGGCTTACGTAGATACCAACATGCTGGCG  >  NC_002947/3451513‑3451658                                                                                                                                                                                                                                                                                                          TCAAAGGGTTTGCCCTGGCCGTTCACGACCGCAGCGTGGGCGACCTGAAGCTCGATGGCGATAGCGTGGGCACCTACTGGACGCTGGTCGGGCCACAGGGCGCGTACCTGGACGCGGTGTTGCAATACACCCGCCTGGATGGCCGCGCC                                                                                                                                                     >  2:8526/1‑149                                                                                             CCACAGGGCGCGTACCTGGACGCGGTGTTGCAATACACCCGCCTGGATGGCCGCGCCCTGTGGCCCGACCAGCGTCCAGTAGGTGCCCACGCTATCGCCATCGAGCTTCAGGTCGCCCACGCTGCGGTCGTGAACGGCCAGGGCAAACC                                                         >  1:201235/1‑149                                                                                                 AGGGCGCGTACCTGGACGCGGTGTTGCAATACACCCGCCTGGATGGCCGCGCCCTGTGGCCCGACCAGCGTCCAGTAGGTGCCCACGCTATCGCCATCGAGCTTCAGGTCGCCCACGCTGCGGTCGTGAACGGCCAGGGCAAACCCTTT                                                     >  7:153904/1‑149                                                                                                  GGGCGCGTACCTGGACGCGGTGTTGCAATACACCCGCCTGGATGGCCGCGCCCTGTGGCCCGACCAGCGTCCAGTAGGTGCCCACGCTATCGCCATCGAGCTTCAGGTCGCCCACGCTGCGGTCGTGAACGGCCAGGGCAAACCCTTTG                                                    <  2:201235/149‑1                                                                                                                ACGCGGTGTTGCAATACACCCGCCTGGATGGCCGCGCCCTGTGGCCCGACCAGCGTCCAGTAGGTGCCCACGCTATCGCCATCGAGCTTCAGGTCGCCCACGCTGCGGTCGTGAACGGCCAGGGCAAACCCTTTGACGTCGGCGTCCAG                                      <  8:153904/149‑1                                                                                                                                                    CCCTGTGGCCCGACCAGCGTCCAGTAGGTGCCCACGCTATCGCCATCGAGCTTCAGGTCGCCCACGCTGCGGTCGTGAACGGCCAGGGCAAACCCTTTGACGTCGGCGTCCAGGCGGCTATGGCTTACGTAGATACCAACATGCTGGCG  <  2:117137/149‑1                                                                                                                                                     CCTGTGGCCCGACCAGCGTCCAGTAGGTGCCCACGCTATCGCCATCGAGCTTCAGGTCGCCCACGCTGCGGTC                                                                             >  5:86380/1‑73                                                                                                                                                     CCTGTGGCCCGACCAGCGTCCAGTAGGTGCCCACGCTATCGCCATCGAGCTTCAGGTCGCCCACGCTGCGGTC                                                                             <  6:86380/73‑1                                                                                                                                                                                                                                                                                                          TCAAAGGGTTTGCCCTGGCCGTTCACGACCGCAGCGTGGGCGACCTGAAGCTCGATGGCGATAGCGTGGGCACCTACTGGACGCTGGTCGGGCCACAGGGCGCGTACCTGGACGCGGTGTTGCAATACACCCGCCTGGATGGCCGCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3451609‑3451460 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgcccTGTGGCCCGACCAGCGTCCAGTAGGTGCCCACGCTATCGCCATCGAGCTTCAGGTCGCCCACGCTGCGGTCGTGAACGGCCAGGGCAAACCCTTTGACGTCGGCGTCCAGGCGGCTATGGCTTACGTAGATACCAACATGCTGGCG  >  NC_002947/3451513‑3451658

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.