New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3451460 = | 49 (0.860) | 4 (0.070) | 4/246 | NT | 7.5% | coding (1987/2478 nt) | PP_3069 | outer membrane autotransporter |
? | NC_002947 | 3451513 = | 52 (0.970) | coding (1934/2478 nt) | PP_3069 | outer membrane autotransporter |
GGCGCTTTCCAGCGCGACCTTTTGCGCAATCAACTGAGCTTGCGGTTCCACGCGCCAGCGCTCGGACAGGGTGATGGGGTAGCCCGATTCCAGTGAAGCTGTCCAGGCGTGGCCGTCGAGGTTCAGCGTGTCGCCACGCTCGGAGCGGGCGCGGCCATCCAGGCGGGTGTATTGCAACACCGCGTCCAGGTACGCGCCCTGTGGCCCGACCAGCGTCCAGTAGGTGCCCACGCTATCGCCATCGAGCTTCAGGTCGCCCACGCTGCGGTCGTGAACGGCCAGGGCAAA > NC_002947/3451314‑3451601 | cgccagcatgttggtatctacgtaagccatagccgcctggacgccgacgtcaaagggtttgccctggccgttcacgaccgcagcgtgggcgacctgaagctcgatggcgatagcgtgggcacctactggacgctggtcgggccacaggg < 2:117137‑M1/3‑1 (MQ=255) gcTTTCCAGCGCGACCTTTTGCGCAATCAACTGAGCTTGCGGTTCCACGCGCCAGCGCTCGGACAGGGTGATGGGGTAGCCCGATTCCAGTGAAGCTGTCCAGGCGTGGCCGTCGAGGTTCAGCGTGTCGCCACGCTCGGAGCGGgcgc > 1:341338/1‑149 (MQ=255) tttCCAGCGCGACCTTTTGCGCAATCAACTGAGCTTGCGGTTCCACGCGCCAGCGCTCGGACAGGGTGATGGGGTAGACCGATTCCAGTGAAGCTGTCCAGGCGTGGCCGTCGAGGTTCAGCGTGTCGCCACGCTCGgagcgggagcgg > 3:260646/1‑149 (MQ=255) gACCTTTTGCGCAATCAACTGAGCTTGCGGTTCCACGCGCCAGCGCTCGGACAGGGTGATGGGGTAGCCCGATTCCAGTGAAGCTGTCCAGGCGTGGCCGTCGAGGTTCAGCGTGTCGCCACGCTCGGAGCGGGCGCGGCCATCCAGGc > 1:314048/1‑149 (MQ=255) cTTTTGCGCAATCAACTGAGCTTGCGGTTCCACGCGCCAGCGCTCGGACAGGGTGATGGGGTAGCCCGATTCCAGTGAAGCTGTCCAGGCGTGGCCGTCGAGGTTCAGCGTGTCGCCACGCTCGGAGCGGGCGCGGCCATCCAGGCggg > 3:224654/1‑149 (MQ=255) cTTTTGCGCAATCAACTGAGCTTGCGGTTCCACGCGCCAGCGCTCGGACAGGGTGATGGGGTAGCCCGATTCCAGTGAAGCTGTCCAGGCGTGGCCGTCGAGGTTCAGCGTGTCGCCACGCTCGGAGCGGGCGCGGCCATCCAGGCggg < 8:117428/149‑1 (MQ=255) ctggacgccgacgtcaaagggtttgccctggccgttcacgaccgcagcgtgggcgacctgaagctcgatggcgatagcgtgggcacctactggacgctggtcgggccacaGGGCGCGGCCATCCAGGCGGGTGTATTGCAACACCGCGt < 8:153904‑M1/39‑1 (MQ=255) aGCTTGCGGTTCCACGCGCCAGCGCTCGGACAGGGTGATGGGGTAGCCCGATTCCAGTGAAGCTGTCCAGGCGTGGCCGTCGAGGTTCAGCGTGTCGCCACGCTCGGAGCGGGCGCGGCCATCCAGGCGGGTGTATTGCAACACcgcg < 4:224654/148‑1 (MQ=255) gCGGTTCCACGCGCCAGCGCTCGGACAGGGTGATGGGGTAGCCCGATTCCAGTGAAGCTGTCCAGGCGTGGCCGTCGAGGTTCAGCGTGTCGCCACGCTCGGAGCGGGCGCGGCCATCCAGGCGGGTGTATTGCAACACCGCGTCCAg < 6:60611/148‑1 (MQ=255) cGGTTCCACGCGCCAGCGCTCGGACAGGGTTTTGGGGTAGCCCGATTCCAGTGAAGCTGTCCAGGCGTGGCCGTCGAGGTTCAGCGTGTCGCCACGCTCGGAGCGGGCGCGGCCATCCAGGCGGGTGTATTGCAACACCGCGTCCAGGt < 2:298058/149‑1 (MQ=255) cGGTTCCACGCGCCAGCGCTCGGACAGGGTGATGAGGTAGCCCGATTCCAGTGAAGCTGTCCAGGCGTGGCCGTCGAGGTTCAGCGTGTCGCCACGCTCGGAGCGGGCGCGGCCATCCAGGCGGGTGTATTGCAACACCGCGTCCAgg > 1:53844/1‑148 (MQ=255) gTTCCACGCGCCAGCGCTCGGACAGGGTGATGGGGTAGCCCGATTCCAGTGAAGCTGTCCAGGCGTGGCCGTCGAGGTTCAGCGTGTCGCCACGCTCGGAGCGGGCGCGGCCATCCAGGCGGGTGTATTGCAACACCGCGTCCAGGTAc > 1:117137/1‑149 (MQ=255) ttCCACGCGCCAGCGCTCGGACAGGGTGATGGGGTAGCCCGATTCCAGTGAAGCTGTCCAGGCGTGGCCGTCGAGGTTCAGCGTGTCGCCACGCTCGGAGCGGGCGCGGCCATCCAGGCGGGTGTATTg > 1:54431/1‑129 (MQ=255) ttCCACGCGCCAGCGCTCGGACAGGGTGATGGGGTAGCCCGATTCCAGTGAAGCTGTCCAGGCGTGGCCGTCGAGGTTCAGCGTGTCGCCACGCTCGGAGCGGGCGCGGCCATCCAGGCGGGTGTATTg < 2:54431/129‑1 (MQ=255) aCGCGCCAGCGCTCGGACAGGGTGATGGGGTAGCCCGATTCCAGTGAAGCTGTCCAGGCGTGGCCGTCGAGGTTCAGCGTGTCGCCACGCTCGGAGCGGGCGCGGCCATCCAGGCGGGTGTATTGCAACACCGCGTCCAGGTACGCGcc > 4:331685/1‑149 (MQ=255) caaagggtttgccctggccgttcacgaccgcagcgtgggcgacctgaagctcgatggcgatagcgtgggcacctactggacgctggtcgggccacaGGGCGCGGCCATCCAGGCGGGTGTATTGCAACACCGCGTCCAGGTACGCGccc < 2:201235‑M1/53‑1 (MQ=255) aaagggtttgccctggccgttcacgaccgcagcgtgggcgacctgaagctcgatggcgatagcgtgggcacctactggacgctggtcgggccacaGGGCGCGGCCATCCAGGCGGGTGTATTGCAACACCGCGTCCAGGTACGCGCCCt > 7:153904‑M1/96‑149 (MQ=255) gcCAGCGCTCGGACAGGGTGATGGGGTAGCCCGATTCCAGTGAAGCTGTCCAGGCGTGGCCGTCGAGGTTCAGCGTGTCGCCACGCTCGGAGCGGGCGCGGCCATCCAGGCGGGTGTATTGCAACACCGCGTCCAGGTACGCGCCCtgt < 2:341338/149‑1 (MQ=255) ggtttgccctggccgttcacgaccgcagcgtgggcgacctgaagctcgatggcgatagcgtgggcacctactggacgctggtcgggccacaGGGCGCGGCCATCCAGGCGGGTGTATTGCAACACCGCGTCCAGGTACGCGCCCTGTgg > 1:201235‑M1/92‑149 (MQ=255) cAGCGCTCGGACAGGGTGATGGGGTAGCCCGATTCCAGTGAAGCTGTCCAGGCGTGGCCGTCGAGGTTCAGCGTGTCGCCACGCTCGGAGCGGGCGCGGCCATCCAGGCGGGTGTATTGCAACACCGCGTCCAGGTACGCGCCCtgtg > 5:241877/1‑148 (MQ=255) cAGCGCTCGGACAGGGTGATGGGGTAGCCCGATTCCAGTGAAGCTGTCCAGGCGTGGCCGTCGAGGTTCAGCGTGTCGCCACGCTCGGAGCGGGCGCGGCCATCCAGGCGGGTGTATTGCAACACCGCGTCCAGGTACGCGCCCtgtg < 6:241877/148‑1 (MQ=255) gcTCGGACAGGGTGATGGGGTAGCCCGATTCCAGTGAAGCTGTCCAGGCGTGGCCGTCGAGGTTCAGCGTGTCGCCACGCTCGGAGCGGGCGCGGCCATCCAGGCGGGTGTATTGCAACACCGCGTCCAGGTACGCGCCCTGTGGccc > 8:76791/1‑148 (MQ=255) cTCGGACAGGGTGTTGGCGTAGCCCGATTCCAGTGAAGCTGTCCAGGCGTGGGCGTCGAGGTTCAGCGTGTCGCCACGCTCGGAGCGGGCGCGGCCATCCAGGCGGGTGTATTGCAACTCCGCGTCCAGGTACGCGCCCTGTGGCCCGa < 1:26604/149‑1 (MQ=255) cTCGGACAGGGTGATGGGGTAGCCCGATTCCAGTGAAGCTGTCCAGGCGTGGCCGTCGAGGTTCAGCGTGTCGCCACGCTCGGAGCGGGCGCGGCCATCCAGGCGGGTGTATTGCAACNCCGCGTCCAGGTACGCGCCCTGTGGCCCGa < 1:31975/149‑1 (MQ=255) ggACAGGGTGATGGGGTAGCCCGATTCCAGTGAAGCTGTCCAGGCGTGGCCGTCGAGGTTCAGCGTGTCGCCACGCTCGGAGCGGGCGCGGCCATCCAGGCGGGTGTATTGCAACACCGCGTCCAGGTACGCGCCCTGTGGCCCGAc > 8:264716/1‑147 (MQ=255) gACAGGGTGATGGGGTAGCCCGATTCCAGTGAAGCTGTCCAGGCGTGGCCGTCGAGGTTCAGCGTGTCGCCACGCTCGGAGCGGGCGCGGCCATCCAGGCGGGTGTATTGCAACACCGCGTCCAGGTACGCGCCCTGTGGCCCGACCAg > 2:59293/1‑149 (MQ=255) aCAGGGTGATGGGGTAGCCCGATTCCAGTGAAGCTGTCCAGGCGTGGCCGTCGAGGTTCAGCGTGTCGCCACGCTCGGAGCGGGCGCGGCCATCCAGGCGGGTGTATTGCAACACCGCGTCCAGGTACGCGCCCTGTGGCCCGACCAGc < 3:65755/149‑1 (MQ=255) gggTGATGGGGTAGCCCGATTCCAGTGAAGCTGTCCAGGCGTGGCCGTCGAGGTTCAGCGTGTCGCCACGCTCGGAGCGGGCGCGGCCATCCAGGCGGGTGTATTGCAACACCGCGTCCAGGTACGCGCCCTGTGGCCCGACCAGCGTc < 7:264716/149‑1 (MQ=255) ggTGATGGGGTAGCCCGATTCCAGTGAAGCTGTCCAGGCGTGGCCGTCGAGGTTCAGCGTGTCGCCACGCTCGGAGCGGGCGCGGCCATCCAGGCGGGTGTATTGCAACACCGCGTCCAGGTACGCGCCCTGTGGCCCGACCAGCGTc < 2:314048/148‑1 (MQ=255) ggataggggTAGCCCGATGCCAGTGAAGCTGTCCAGGCGTGGCCGTCGAGGTTCAGCGTGTCGCCACGCTCGGAGCGGGCGCGGCCATCCAGGCGGGTGTATTGCAACACCGCGTCCAGGTACGCGCCCTGTGGCCCGACCAGCGTCCa < 1:306284/144‑1 (MQ=255) gTGATGGGGTAGCCCGATTCCAGTGAAGCTGTCCAGGCGTGGCCGTCGAGGTTCAGCGTGTCGCCACGCTCGGAGCGGGCGCGGCCATCCAGGCGGGTGTATTGCAACACCGCGTCCAGGTACGCGCCCTGTGGCCCGACCAGCGTCCa < 3:331685/149‑1 (MQ=255) ggggTAGCCCGATTCCAGTGAAGCTGTCCAGGCGTGGCCGTCGAGGTTCAGCGTGTCGCCACGCTCGGAGCGGGCGCGGCCATCCAGGCGGgt > 1:191609/1‑93 (MQ=255) ggggTAGCCCGATTCCAGTGAAGCTGTCCAGGCGTGGCCGTCGAGGTTCAGCGTGTCGCCACGCTCGGAGCGGGCGCGGCCATCCAGGCGGgt < 2:191609/93‑1 (MQ=255) gaccgcagcgtgggcgacctgaagctcgatggcgatagcgtgggcacctactggacgctggtcgggccacagg < 6:86380‑M1/2‑1 (MQ=255) gaccgcagcgtgggcgacctgaagctcgatggcgatagcgtgggcacctactggacgctggtcgggccacagg > 5:86380‑M1/72‑73 (MQ=255) gTAGCCCGATTCCAGTGAAGCTGTCCAGGCGTGGCCGTCGAGGTTCAGCGTGTCGCCACGCTCGGAGCGGGCGCGGCCATCCAGGCGGGTGTATTACAACACCGCGTCCAGGTACGCGCCCTGTGGCCCGACCAGCGTCCAGTAGGTGc < 6:183193/149‑1 (MQ=255) cccGATTCCAGTGAAGCTGTCCAGGCGTGGCCGTCGAGGTTCAGCGTGTCGCCACGCTCGGAGCGGGCGCGGCCATCCAGGCGGGTGTATTGCAACACCGCGTCCAGGTACGCGCCCTGTGGCCCGACCAGCGTCCAGTAGGTGCCCAc > 1:8526/1‑149 (MQ=255) aGTGAAGCTGTCCAGGCGTGGCCGTCGAGGTTCAGCGTGTCGCCACGCTCGGAGCGGGCGCGGCCATCCAGGCGGGTGTATTGCAACACCGCGTCCAGGTACGCGCCCTGTGGCCCGACCAGCGTCCAGTAGGTGCCCACGCTATCGc > 3:54777/1‑148 (MQ=255) aGTGAAGCTGTCCAGGCGTGGCCGTCGAGGTTCAGCGTGTCGCCACGCTCGGAGCGGGCGCGGCCATCCAGGCGGGTGTATTGCAACACCGCGTCCAGGTACGCGCCCTGTGGCCCGACCAGCGTCCAGTAGGTGCCCACGCTATCGc > 3:50011/1‑148 (MQ=255) gAAGCTGTCCCGGCGTGGCCGTCGAGGTTCCGCGGGTCGCCACGCTCGGAGCGGGCGCGGCCCTCCCGGCGGGTGTATTGCAACACCGCGTCCAGGTCCGCGCCCTGTGGCCCGCCCAGCGTCCCGTAGGGGCCCACGCGCTCGCCagc > 3:211455/1‑147 (MQ=255) gAAGCTGTCCAGGCGTGGCCGTCGAGGTTCAGCGTGTCGCCACGCTCGGAGCGGGCGCGGCCATCCAGGCGGGTGTATTGCAACACCGCGTCCAGGTACGCGCCCTGTGGCCCGACCAGCGTCCAGTAGGTGCCCACGCTATCGCCATc > 3:206976/1‑149 (MQ=255) aaGCTGTCCAGGCGTGGCCGTCGAGGTTCAGCGTGTCGCCACGCTCGGAGCGGGCGCGGCCATCCAGGCGGGTGTATTGCAACACCGCGTCCAGGTACGCGCCCTGTGGCCCGACCAGCGTCCAGTAGGTGCCCACGCTATCGCCATc < 4:260646/148‑1 (MQ=255) aGGCGTGGCCGTCGAGGTTCAGCGTGTCGCCACGCTCGGAGCGGGCGCGGCCATCCAGGCGGGTGTATTGCAACACCGCGTCCAGGTACGCGCCCTGTGGCCCGACCAGCGTCCAGTAGGTGCCCACGCTATCGCCATCGa < 5:227976/141‑1 (MQ=255) aGGCGTGGCCGTCGAGGTTCAGCGTGTCGCCACGCTCGGAGCGGGCGCGGCCATCCAGGCGGGTGTATTGCAACACCGCGTCCAGGTACGCGCCCTGTGGCCCGACCAGCGTCCAGTAGGTGCCCACGCTATCGCCATCGa > 6:227976/1‑141 (MQ=255) aGGCGTGGCCGTCGAGGTTCAGCGTGTCGCCACGCTCGGAGCGGGCGCGGCCATCCAGGCGGGTGTATTGCAACACCGCGTCCAGGTACGCGCCCTGTGGCCCGACCAGCGTCCAGTAGGTGCCCACGCTATCGCCATCGAGCTTCAgg < 7:76791/149‑1 (MQ=255) cGTCGAGGTTCAGCGTGTCGCCACGCTCGGAGCGGGCGCGGCCATCCAGGCGGGTGTATTGCAACACCGCGTCCAGGTACGCGCCCTGTGGCCCGACCAGCGTCCAGTAGGTGCCCACGCTATCGCCATCGAGCTTCAGGTCGCCCACg > 8:152229/1‑149 (MQ=255) gTCGAGGTTCAGCGTGTCGCCACGCTCGGAGCGGGCGCGGCCATCCAGGCGGGTGTATTGCAACACCGCGTCCAGGTACGCGCCCTGTGGCCCGACCAGCGTCCAGTAGGTGCCCACGCTATCGCCATCGAGCTTCAGGTCGCCCACGc > 1:325458/1‑149 (MQ=255) tCGAGGTTCAGCGTGTCGCCACGCTCGGAGCGGGCGCGGCCATCCAGGCGGGTGTATTGCAACACCGCGTCCAGGTACGCGCCCTGTGGCCCGACCAGCGTCCAGTAGGTGCCCACGCTATCGCCATCGAGCTTCAGGTCGCCCACGCt > 4:129119/1‑149 (MQ=255) cgaGCGTGGCGACACGCTCGGAGCGGGCGCGGCCATCCAGGCGGGTGTATTGCAACACCGCGTCCAGGTACGCGCCCTGTGGCCCGACCAGCGTCCAGTAGGTGCCCACGCTATCGCCATCGAGCTTCAGGTCGCCCCCGCTGCGGTCg > 2:285803/3‑149 (MQ=255) catcGTGTCGCCACGCTCGGAGCGGGCGCGGCCAGCCCGTCGGGGTTATTGCAACACCGCGTCCAGGTACGCGCCCTGTGGCCCGACCAGCGTCCAGTAGGTGCCCACGCTCTCGCCATCGAGCTTCAGGTCGCCCACGCTGCGGTCGt < 4:211455/146‑1 (MQ=255) aGCGTGTAGCCACTCTCGGAGCGTGCGCGGCCATCCAGGCGGGTGTATTGCAACACCGCGTCCAGGTACGCGCCCTGTGGCCCGACCAGCGTCCAGTAGGTGCCCACGCTATCGCCATCGAGCTTCAGGTCGCCCACGCTGCGGTCGt < 4:206976/148‑1 (MQ=255) ccACGCTCGGAGCGGGCGCGGCCATCCAGGCGGGTGTATTGCAACACCGCGTCCAGGTACGCGCCCTGTGGCCCGACCAGCGTCCAGTAGGTGCCCACGCTATCGCCATCGAGCTTCAGGTCGCCCACGCTGCGGTCGTGAACGGcc < 6:144222/147‑1 (MQ=255) ccACGCTCGGAGCGGGCGCGGCCATCCAGGCGGGTGTATTGCAACACCGCGTCCAGGTACGCGCCCTGTGGCCCGACCAGCGTCCAGTAGGTGCCCACGCTATCGCCATCGAGCTTCAGGTCGCCCACGCTGCGGTCGTGAACGGcc > 5:144222/1‑147 (MQ=255) cACGCTCGGAGCGGGCGCGGCCATCCAGGCGGGTGTATTGCAACACCGCGTCCAGGTACGCGCCCTGTGGCCCGACCAGCGTCCAGTAGGTGCCCACGCTATCGCCATCGAGCTTCAGGTCGCCCACGCTGCGGTCGTGAACGGCCAgg > 4:97538/1‑149 (MQ=255) gCTCGGAGCGGGCGCGGCCATCCAGGCTGGTGTATTGCAACACCGCGTCCAGGTACGCGCCCTGTGGCCCGACCAGCGTCCAGTAg < 7:188009/86‑1 (MQ=255) gCTCGGAGCGGGCGCGGCCATCCAGGCGGGTGTATTGCAACACCGCGTCCAGGTACGCGCCCTGTGGCCCGACCAGCGTCCAGTAg > 8:188009/1‑86 (MQ=255) ggAGCGGGCGCGGCCATCCAGGCGGGTGTATTGCAACACCGCGTCCAGGTACGCGCCCTGTGGCCCTACCAGCGTCCAGTAGGTGCCCACGCTATCGCCATCGAGCTTCAGGTCGCCCACGCTGCGGTCGTGAACGGCCAGGGCaaa < 4:54777/147‑1 (MQ=255) ggAGCGGGCGCGGCCATCCAGGCGGGTGTATTGCAACACCGCGTCCAGGTACGCGCCCTGTGGCCCGACCAGCGTCCAGTAGGTGCCCACGCTATCGCCATCGAGCTTCAGGTCGCCCACGCTGCGGTCGTGAACGGCCAGGGCaaa < 7:152229/147‑1 (MQ=255) ggAGCGGGCGCGGCCATCCAGGCGGGTGTATTGCAACACCGCGTCCAGGTACGCGCCCTGTGGCCCGACCAGCGTCCAGTAGGTGCCCACGCTATCGCCATCGAGCTTCAGGTCGCCCACGCTGCGGTCGTGAACGGCCAGGGCaaa < 4:50011/147‑1 (MQ=255) gAGCGGGCGCGGCCATCCAGGCGGGTGTATTGCAACACCGCGTCCAGGTACGCGCCCCGTGGCCCGACCAGCGTCCAGTAGGTGCCCACGCTATCGCCATCGAGCTTCAGGTCGCCCACg < 3:199635/120‑1 (MQ=255) gAGCGGGCGCGGCCATCCAGGCGGGTGTATTGCAACACCGCGTCCAGGTACGCGCCCCGTGGCCCGACCAGCGTCCAGTAGGTGCCCACGCTATCGCCATCGAGCTTCAGGTCGCCCACg > 4:199635/1‑120 (MQ=255) | GGCGCTTTCCAGCGCGACCTTTTGCGCAATCAACTGAGCTTGCGGTTCCACGCGCCAGCGCTCGGACAGGGTGATGGGGTAGCCCGATTCCAGTGAAGCTGTCCAGGCGTGGCCGTCGAGGTTCAGCGTGTCGCCACGCTCGGAGCGGGCGCGGCCATCCAGGCGGGTGTATTGCAACACCGCGTCCAGGTACGCGCCCTGTGGCCCGACCAGCGTCCAGTAGGTGCCCACGCTATCGCCATCGAGCTTCAGGTCGCCCACGCTGCGGTCGTGAACGGCCAGGGCAAA > NC_002947/3451314‑3451601 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |