| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3572273 = | 55 (0.970) | 3 (0.060) | 3/246 | NT | 6.2% | coding (309/444 nt) | PP_3153 | hypothetical protein |
| ? | NC_002947 | 3572311 = | 39 (0.730) | coding (347/444 nt) | PP_3153 | hypothetical protein | |||||
CTCCTGCCCGACTTTTCATCAACGCCAGTTAAGGTTAACGGTCGTGGGCGCCTTGCCCGTGACGGTCGCCCACTGCTGCACTGCCTGGCCTTGGGCATTGCCAATGACCTTGTATTTGCCGGGAGGCAATTGCACATACAGCAGCGGCCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3572426‑3572273‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccggcaAATACAAGGTCATTGGCAATGCCCAAGGCCAGGCAGTGCAGCAGTGGGCGACCGTCACGGGCAAGGCGCCCACGACCGTTAACCTTAACTGGCGTTGATGAAAAGTCGGG > NC_002947/3572311‑3572420 CTCCTGCCCGACTTTTCATCAACGCCAGTTAAGGTTAACGGTCGTGGGCGCCTTGCCCGTGACGGTCGCCCACTGCTGCACTGCCTGGCCTTGGGCATTGCCAATGACCTTGTATTTGCCGGGAGGCAATTGCACATACAGCAGCGGC < 2:25015/148‑1CTCCTGCCCGACTTTTCATCAACGCCAGTTAAGGTTAACGGTCGTGGGCGCCTTGCCCGTGACGGTCGCCCACTGCTGCACTGCCTGGCCTTGGGCATTGCCAATGACCTTGTATTTGCCGGGAGGCAATTGCACATACAGCAGCGGC < 4:34146/148‑1 CTGCCCGACTTTTCATCAACGCCAGTTAAGGTTTACGGTCGTGGGCGCCATGCCCCTGACGGTCGCCCACTGCAGCACTGCCTGGCCTTGGGGATTGCCAAAGACCTTTTATTTGACGGGAGGCAATTTCACATACAGCAGCGGCCCGG > 8:314619/1‑149 CAGTTAAGGTTAACGGTCGTGGGCGCCTTGCCCGTGACGGTCGCCCACTGCTGCACTGCCTGGCCTTGGGCATTGCCAATGACCTTGTATTTGCCGGGAGGCAATTGCACATACAGCAGCGGCCC > 1:36609/1‑125 CAGTTAAGGTTAACGGTCGTGGGCGCCTTGCCCGTGACGGTCGCCCACTGCTGCACTGCCTGGCCTTGGGCATTGCCAATGACCTTGTATTTGCCGGGAGGCAATTGCACATACAGCAGCGGCCC < 2:36609/125‑1 GTGACGGTCGCCCACTGCTGCACTGCCTGGCCTTGGGCATTGCCAATGACCTTGTATTTGCCGGGAGGCAATTGCACATACAGCAGCGGCCCG > 3:73951/1‑93 GTGACGGTCGCCCACTGCTGCACTGCCTGGCCTTGGGCATTGCCAATGACCTTGTATTTGCCGGGAGGCAATTGCACATACAGCAGCGGCCCG < 4:73951/93‑1 CTTGTATTTGCCGGGAGGCAATTGCACATACAGCAGCGGCCCGGCAAATACAAGGTCATTGGCAATGCCCAAGGCCAGGCAGTGCAGCAGTGGGCGACCGTCACGGGCAAGGCGCCCACGACCGTTAA > 5:78219/1‑128 CTTGTATTTGCCGGGAGGCAATTGCACATACAGCAGCGGCCCGGCAAATACAAGGTCATTGGCAATGCCCAAGGCCAGGCAGTGCAGCAGTGGGCGACCGTCACGGGCAAGGCGCCCACGACCGTTAA < 6:78219/128‑1 GCCGGGAGGCAATTGCACATACAGCAGCGGCCCGGCAAATACAAGGTCATTGGCAATGCCCAAGGCCAGGCAGTGCAGCAGTGGGCGACCGTCACGGGCAAGGCGCCCACGACCGTTAACCTTAACTGGCGTTGATGAAAAGTCGGG > 2:306495/1‑147 CTCCTGCCCGACTTTTCATCAACGCCAGTTAAGGTTAACGGTCGTGGGCGCCTTGCCCGTGACGGTCGCCCACTGCTGCACTGCCTGGCCTTGGGCATTGCCAATGACCTTGTATTTGCCGGGAGGCAATTGCACATACAGCAGCGGCCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3572426‑3572273‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccggcaAATACAAGGTCATTGGCAATGCCCAAGGCCAGGCAGTGCAGCAGTGGGCGACCGTCACGGGCAAGGCGCCCACGACCGTTAACCTTAACTGGCGTTGATGAAAAGTCGGG > NC_002947/3572311‑3572420 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |