New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3572273 =	55 (0.970)	3 (0.060)	3/246	NT	6.2%	coding (309/444 nt)	PP_3153	hypothetical protein
	?	NC_002947	3572311 =	39 (0.730)					coding (347/444 nt)	PP_3153	hypothetical protein

TTATGACCTGCACGTAGAGCTTTCGACCGGCCCGGAAGGCAAGTTCCAGAGCGGGGCTACCGTCGATATCCAGA‑ATGCCCAGGGCCAGCCCGTACTCAGTGTCAGCGATGCCGGGCCGCTGCTGTATGTGCAATTGCCTCCCGGCAAATACAAGGTCATTGGCAATGCCCAAGGCCAGGCAGTGCAGCAGTGGGCGACCGTCACGGGCAAGGCGCCCACGACCGTTAACCTTAACTGGCGTTGATGAAAAGTCGGGCAGGAGTACGCCTGTGCTCCTGCCTGGGGT  >  NC_002947/3572165‑3572450                                                                                                                                                    |                                                                                                                                            ttATGACCTGCACGTAGAGCTTTCGCCCGGCCCGGAAGGCAAGTTCCAGAGCGGGGCTACCGTCGATATCCAGA‑ATGCCCAGGGCCAGCCCGTACTCAGTGTCAGCGATGCCGGGCCGCTGCTGTATGTGCAATTGCCTCCCGGCaaa                                                                                                                                            >  7:259123/1‑148 (MQ=255)     gACCTGCACGTAGAGCTTTCGACCGGCCCGGAAGGCAAGTTCCAGAGCGGGGCTACCGTCGATATCCAGA‑ATGCCCAGGGCCAGCCCGTACTCAGTGTCAGCGATGCCGGGCCGCTGCTGTATGTGCAATTGCCTCCCGGCaaa                                                                                                                                            <  1:75613/144‑1 (MQ=255)     gACCTGCACGTAGAGCTTTCGACCGGCCCGGAAGGCAAGTTCCAGAGCGGGGCTACCGTCGATATCCAGA‑ATGCCCAGGGCCAGCCCGTACTCAGTGTCAGCGATGCCGGGCCGCTGCTGTATGTGCAATTGCCTCCCGGCaaa                                                                                                                                            >  2:75613/1‑144 (MQ=255)      aCCTGCACGTAGAGCTTTCGACCGGCCCGGAAGGCAAGTTCCAGAGCGGGGCTACCGTCGATATCCAGA‑AAGCCCAGGGCCAGCCCGTACTCAGTGTCAGCGATGCCGGGCCGCTGCTGTATGTGCAATTGCCTCCCGGCAAATACAAg                                                                                                                                      <  5:338964/149‑1 (MQ=255)       ccTGCACGTAGAGCTTTCGACCTGCCCTGAAGGCAAGTTCCAGAGCGGGGCTACCTTCGATATCCAGA‑ATGCCCAGGGCCAGCCCGTACTCAGTGTCAGCGATGCCGGGCCGCTGCTGTATGTGTAATTGCCTCCCGGCAAATACAAg                                                                                                                                      <  3:199021/148‑1 (MQ=255)       ccTGCACGTAGAGCTTTCGACCGGCCCGGAAGGCAAGTTCCAGAGCGGGGCTACCGTCGATATCCAGA‑ATGCCCAGGGCCAGCCCGTACTCAGTGTCAGCGATGCCGGGCCGCTGCTGTATGTGCAATTGCCTCCCGGCAAATACAAgg                                                                                                                                     >  7:111943/1‑149 (MQ=255)       ccTGCACGTAGAGCTTTCGACCGGCCCGGAAGGCAAGTTCCAGAGCGGGGCTACCGTCGATATCCAGA‑ATGCCCAGGGCCAGCCCGTACTCAGTGTCAGCGATGCCGGGCCGCTGCTGTATGTGCAATTGCCTCCCGGCAAATACAAgg                                                                                                                                     >  5:12308/1‑149 (MQ=255)        cTGCACGTAGAGCTTTCGACCGGCCCGGAAGGCAAGTTCCAGAGCGGGGCTACCGTCGATATCCAGA‑ATGCCCAGGGCCAGCCCGTACTCAGTGTCAGCGATGCCGGGCCGCTGCTGTATGTGCAATTGCCTCCCGGCAAATACAAGGt                                                                                                                                    >  5:92230/1‑149 (MQ=255)                agagCTTTCGACCGGCCCGGAAGGCAAGTTCCAGAGCGGGGCTACCGTCGATATCCAGA‑ATGCCCAGGGCCAGCCCGTACTCAGTGTCAGCGATGCCGGGCCGCTGCTGTATGTGCAATTGCCTCCCGGCAAATACaa                                                                                                                                       <  6:286360/138‑1 (MQ=255)                agagCTTTCGACCGGCCCGGAAGGCAAGTTCCAGAGCGGGGCTACCGTCGATATCCAGA‑ATGCCCAGGGCCAGCCCGTACTCAGTGTCAGCGATGCCGGGCCGCTGCTGTATGTGCAATTGCCTCCCGGCAAATACaa                                                                                                                                       >  5:286360/1‑138 (MQ=255)                  agCTTTCGACCGGCCCGGAAGGCAAGTTCCAGAGCGGGGCTACCGTCGATATCCAGA‑ATGCCCAGGGCCAGCCCGTACTCAGTGTCAGCGATGCCGGGCCGCTGCTGTATGTGCAATTGCCTCCCGGCAAATACAAGGTCATTGGCAAt                                                                                                                          <  6:12308/149‑1 (MQ=255)                  agCTTTCGACCGGCCCGGAAGGCAAGTTCCAGAGCGGGGCTACCGTCGATATCCAGA‑ATGCCCAGGGCCAGCCCGTACTCAGTGTCAGCGATGCCGGGCCGCTGCTGTATGTGCAATTGCCTCCCGGCAAATACAAGGTCATTGGCAAt                                                                                                                          <  8:111943/149‑1 (MQ=255)                    cTTTCGACCGGCCCGGAAGGCAAGTTCCAGAGCGGGGCTACCGTCGATATCCAGA‑ATGCCCAGGGCCAGCCCGTACTCAGTGTCAGCGATGCCGGGCCGCTGCTGTATGTGCAATTGCCTCCCGGCAAATACAAGGTCATTgg                                                                                                                              >  8:253143/1‑143 (MQ=255)                    cTTTCGACCGGCCCGGAAGGCAAGTTCCAGAGCGGGGCTACCGTCGATATCCAGA‑ATGCCCAGGGCCAGCCCGTACTCAGTGTCAGCGATGCCGGGCCGCTGCTGTATGTGCAATTGCCTCCCGGCAAATACAAGGTCATTgg                                                                                                                              <  7:253143/143‑1 (MQ=255)                    cTTTCGACCGGCCCGGAAGGCAAGTTCCAGAGCGGGGCTACCGTCGATATCCAGA‑ATGCCCAGGGCCAGCCCGTACTCAGTGTCAGCGATGCCGGGCCGCTGCTGTATGTGCAATTGCCTCCCGGCAAATACAAGGTCATTGGCAATGc                                                                                                                        <  1:118468/149‑1 (MQ=255)                    cTTTCGACCGGCCCGGAAGGCAAGTTCCAGAGCGGGGCTACCGTCGATATCCAGA‑ATGCCCAGGGCCAGCCCGTACTCAGTGTCAGCGATGCCGGGCCGCTGCTGTATGTGCAATTGCCTCCCGGCAAATACAAGGTCATTGGCAATGc                                                                                                                        >  8:31320/1‑149 (MQ=255)                        cGACCGGCCCGGAAGGCAAGTTCCAGAGCGGGGCTACCGTCGATATCCAGA‑ATGCCCAGGGCCAGCCCGTACTCAGTGTCAGCGATGCCGGGCCGCTGCTGTATGTGCAATTGCCTCCCGGCAAATACAAGGt                                                                                                                                    <  3:152159/133‑1 (MQ=255)                        cGACCGGCCCGGAAGGCAAGTTCCAGAGCGGGGCTACCGTCGATATCCAGA‑ATGCCCAGGGCCAGCCCGTACTCAGTGTCAGCGATGCCGGGCCGCTGCTGTATGTGCAATTGCCTCCCGGCAAATACAAGGt                                                                                                                                    >  4:152159/1‑133 (MQ=255)                         gACCGGCCCGGAAGGCAAGTTCCAGAGCGGGGCTACCGTCGATATCCAGA‑ATGCCCAGGGCCAGCCCGTACTCAGTGTCAGCGATGCCGGGCCGCTGCTGTATGTGCAATTGCCTCCCGGCAAATACAAGGTCATTGGCAATGCCCaa                                                                                                                    <  5:333189/148‑1 (MQ=255)                         gACCGGCCCGGAAGGCAAGTTCCAGAGCGGGGCTACCGTCGATATCCAGA‑ATGCCCAGGGCCAGCCCGTACTCAGTGTCAGCGATGCCGGGCCGCTGCTGTATGTGCAATTGCCTCCCGGCAAATACAAGGTCATTGGCAATGCCCAAg                                                                                                                   <  7:31320/149‑1 (MQ=255)                          aCCGGCCCGGAAGGCAAGTTCCAGAGCGGGGCTACCGTCGATATCCAGA‑ATGCCCAGGGCCAGCCCGTACTCAGTGTCAGCGATGCCGGGCCGCTGCTGTATGTGCAATTGCCTCCCGGCAAATACAAGGTCATTGGCAATGCCCAAgg                                                                                                                  <  5:125429/149‑1 (MQ=255)                            ttaacggtcgtgggcgccttgcccgtgacggtcgcccactgctgcactgcctggccttgggcattgccaatgaccttgtattTGCCGGGCCGCTGCTGTATGTGCAATTGCCTCCCGGCAAATACAAg                                                                                                                                      <  6:78219‑M1/46‑1 (MQ=255)                            ttaacggtcgtgggcgccttgcccgtgacggtcgcccactgctgcactgcctggccttgggcattgccaatgaccttgtattTGCCGGGCCGCTGCTGTATGTGCAATTGCCTCCCGGCAAATACAAg                                                                                                                                      >  5:78219‑M1/83‑128 (MQ=255)                              gCCCGGAAGGCAAGTTCCAGAGCGGGGCTACCGTCGATATCCAGAGATGCCCAGGGCCAGCCCGTACTCAGTGTCAGCGATGCCGGGCCGCTGCTGTATGTGCAATTGCCTCCCGGCAAATACAAGGTc                                                                                                                                   >  1:256909/1‑129 (MQ=255)                              gCCCGGAAGGCAAGTTCCAGAGCGGGGCTACCGTCGATATCCAGA‑ATGCCCAGGGCCAGCCCGTACTCAGTGTCAGCGATGCCGGGCCGCTGCTGTATGTGCAATTGCCTCCCGGCAAATACAAGGTc                                                                                                                                   <  2:256909/128‑1 (MQ=255)                                         aaGTTCCAGAGCGGGGCTACAGTCCATATCCAGA‑ATGCCAAGGGCCAGCCCGTACTCAGTGTCCGCGATGCCCGGCCGCTGCTGTATGTGCAATTGCCTCCCCGCAAATACAAGGTCATTGGCAATGCCCAAGGACAGGCAGTgaagca                                                                                                   >  7:142848/1‑149 (MQ=255)                                              ccAGAGCGGGGCTACCGTCGATATCCAGA‑ATGCCCAGGGCCAGCCCGTACTCAGTGTCAGCGATGCCGGGCCGCTGCTGTATGTGCAATTGCCTCCCGGCAAATACAAGGTCATTGGCAATGCCCAAGGCCAGGCAGTGCAGCAGTgg                                                                                               <  8:227260/148‑1 (MQ=255)                                               cAGAGCGGGGCTACCGTCGATATCCAGA‑ATGCCCAGGGCCAGCCCGTACTCAGTGTCAGCGATGCCGGGCCGCTGCTGTATGTGCAATTGCCTCCCGGCAAATACAAGGTCATTGGCAATGCCCAAGGCCAGGCAGTGCAGCAGTGGGc                                                                                             >  3:247246/1‑149 (MQ=255)                                                       ggCTACCGTCGATATCCAGA‑ATGCCCAGGGCCAGCCCGTACTCAGTGTCAGCGATGCCGGGCCGCTGCTGTATGTGCAATTGCCTCCCGGCAAATACAAGGTCATTGGCAATGCCCAAGGCCAGGCAGTGCAGCAGTGGGCGACCGTCa                                                                                     >  8:106569/1‑149 (MQ=255)                                                             cGTCGATATCCAGA‑ATGCCCAGGGCCAGCCCGTACTCAGTGTCAGCGATGCCGGGCCGCTGCTGTATGTGCAATTGCCTCCCGGCAAATACAAGGTCATTGGCAATGCCCAAGGCCAGGCAGTGCAGCAGTGGGCGACCGTCACGGGc                                                                                >  4:76228/1‑148 (MQ=255)                                                                     tCCAGA‑ATGCCCAGGGCCAGCCCGTACTCAGTGTCAGCGATGCCGGGCCGCTGCTGTATGTGCAATTGCCTCCCGGCAAATACAAGGTCATTGGCAATGCCCAAGGCCAGGCAGTGCAGCAGTGGGCGACCGTCACGGGCAAGGCGcc                                                                        <  3:76228/148‑1 (MQ=255)                                                                        aGA‑ATGCCCAGGGCCAGCCCGTACTCAGTGTCAGCGATGCCGGGCCGCTGCTGTATGTGCAATTGCCTCCCGGCAAATACAAGGTCATTGGCAATGCCCAAGGCCAGGCAGTGCAGCAGTGGGCGACCGTCACGGGCAAGGCGCCCAc                                                                     >  5:171185/1‑148 (MQ=255)                                                                          a‑aTGCCCAGGGCCAGCCCGTACTCAGTGTCAGCGATGCCGGGCCGCTGCTGTATGTGCAATTGCCTCCCGGCAAATACAAGGTCATTGGCAATGCCCAAGGCCAGGCAGTGCAGCAGTGGGCGACCGTCACGGGCAAGGCGCCCACGAc                                                                  >  2:38957/1‑149 (MQ=255)                                                                             tGCCCAGGGCCAGCCCGTACTCAGTGTCAGCGATGCCGGGCCGCTGCTGAATGTGCAATTGCCTCCCGGCAAATACAAGGTCATTGGCAATGCCCAAGGCCAGGCAGTGCAGCAGTGGGCGACCGTCACGGGCAAGGCGCCCACGACCg                                                                <  7:106569/149‑1 (MQ=255)                                                                                  aGGGCCAGCCCGTACTCAGTGTCAGCGATGCCGGGCCGCTGCTGTATGTGCAATTGCCTCCCGGCAAATACAAGGTCATTGGCAATGCCCAAGGCCAGGCAGTGCAGCAGTGGGCGACCGTCACGGGCAAg                                                                             >  4:58369/1‑131 (MQ=255)                                                                                  aGGGCCAGCCCGTACTCAGTGTCAGCGATGCCGGGCCGCTGCTGTATGTGCAATTGCCTCCCGGCAAATACAAGGTCATTGGCAATGCCCAAGGCCAGGCAGTGCAGCAGTGGGCGACCGTCACGGGCAAg                                                                             <  3:58369/131‑1 (MQ=255)                                                                                        aGCCCGTACTCCGTGGCAGCGATGCCGGGCCGCTGCTGTATGTGCAATTGCCTCCCGGCAAATACAAGGTCATTGGCAATGCCCAAGGCCAGGCAGTGCAGCAGTGGGCGACCGTCACGGGCAAGGCGCCCACGACCGTTAACCTTAAc                                                     <  4:37196/149‑1 (MQ=255)                                                                                         gCCCGTACTCAGTGTCAGCGATGCCGGGCCGCTGCTGTATGTGCAATTGCCTCCCGGCAAATACAAGGTCATTGGCAATGCCCAAGGCCAGGCAGTGCAGCAGTGGGCGACCGTCACGGGCAAGGCGCCCACGACCGTTAACCTTAACt                                                    >  8:139093/1‑149 (MQ=255)                                                                                                   aGTGTCAGCGATGCCGGGCCGCTGCTGTATGTGCAATTGCCTCCCGGCAAATACAAGGTCATTGGCAATGCCCAAGGCCAGGCAGTGCAGCAGTGGGCGACCGTCACGGGCAAGGCGCCCACGACCGTTAACCTTAACTGGCGTtgat                                           <  6:171185/148‑1 (MQ=255)                                                                                                   aGTGGCAGCGATTCCGGGCCGCTGCTGTATGTGCAATTTCCTCCCGGCAAATACAAGGTCATTGGCAATGCCCAAGGCCAGGCAGTGCAGCAGTGGGCGACCGTCACGGGCAAGGCGCCCACGACCGTTAACCTTAACTGGCGTtga                                            <  8:259123/147‑1 (MQ=255)                                                                                                      cttgtatttgccgggaggcaattgcacatacagcagcggcccggcaAATACAAGGTCATTGGCAATGCCCAAGGCCAGGCAGTGCAGCAGTGGGCGACCGTCACGGGCAAGGCGCCCACGACCGTTaa                                                            <  6:78219‑M2/82‑1 (MQ=255)                                                                                                      cttgtatttgccgggaggcaattgcacatacagcagcggcccggcaAATACAAGGTCATTGGCAATGCCCAAGGCCAGGCAGTGCAGCAGTGGGCGACCGTCACGGGCAAGGCGCCCACGACCGTTaa                                                            >  5:78219‑M2/47‑128 (MQ=255)                                                                                                       tCAGCGATGCCGGGCCGCTGCTGTATGTGCAATTGCCTCCCGGCAAATACAAGGTCATTGGCAATGCCCAAGGCCAGGCAGTGCAGCAGTGGGCGACCGTCACGGGCAAGGCGCCCACGACCGTTAACCTTAACTGGCGTTGATGaaa                                       <  6:92230/148‑1 (MQ=255)                                                                                                               gccgggaggcaattgcacatacagcagcggcccggcaAATACAAGGTCATTGGCAATGCCCAAGGCCAGGCAGTGCAGCAGTGGGCGACCGTCACGGGCAAGGCGCCCACGACCGTTAACCTTAACTGGCGTTGATGAAAAGTCggg                                >  2:306495‑M2/38‑147 (MQ=255)                                                                                                                CCGGGCCGCTGCTGTATGTGAAATTGCCTCCCGTCAAATAAAAGGTCTTTGGCAATCCCCAAGGCCAGGCAGTGCTGCAGTGGGCGACCGTCAGGGGCATGGCGCCCACGACCGTAAACCTTAACTGGCGTTGATGAAAAGTCGGGCAg                             >  8:314619‑M1/1‑149 (MQ=255)                                                                                                                 CGGGCCGCTGCTGTATGTGCAATTGCCTCCCGGCAAATACAAGGTCATTGGCAATGCCCAAGGCCAGGCAGTGCAGCAGTGGGCGACCGTCAc                                                                                    <  4:73951‑M1/93‑1 (MQ=255)                                                                                                                 CGGGCCGCTGCTGTATGTGCAATTGCCTCCCGGCAAATACAAGGTCATTGGCAATGCCCAAGGCCAGGCAGTGCAGCAGTGGGCGACCGTCAc                                                                                    >  3:73951‑M1/1‑93 (MQ=255)                                                                                                                  GGGCCGCTGCTGTATGTGCAATTGCCTCCCGGCAAATACAAGGTCATTGGCAATGCCCAAGGCCAGGCAGTGCAGCAGTGGGCGACCGTCACGGGCAAGGCGCCCACGACCGTTAACCTTAACTg                                                   <  2:36609‑M1/125‑1 (MQ=255)                                                                                                                  GGGCCGCTGCTGTATGTGCAATTGCCTCCCGGCAAATACAAGGTCATTGGCAATGCCCAAGGCCAGGCAGTGCAGCAGTGGGCGACCGTCACGGGCAAGGCGCCCACGACCGTTAACCTTAACTg                                                   >  1:36609‑M1/1‑125 (MQ=255)                                                                                                                    GCCGCTGCTGTATGTGCAATTGCCTCCCGGCAAATACAAGGTCATTGGCAATGCCCAAGGCCAGGCAGTGCAGCAGTGGGCGACCGTCACGGGCAAGGCGCCCACGACCGTTAACCTTAACTGGCGTTGATGAAAAGTCGGGCAGGAg                          <  4:34146‑M1/148‑1 (MQ=255)                                                                                                                    GCCGCTGCTGTATGTGCAATTGCCTCCCGGCAAATACAAGGTCATTGGCAATGCCCAAGGCCAGGCAGTGCAGCAGTGGGCGACCGTCACGGGCAAGGCGCCCACGACCGTTAACCTTAACTGGCGTTGATGAAAAGTCGGGCAGGAg                          <  2:25015‑M1/148‑1 (MQ=255)                                                                                                                                   gCAATTGCCTCCCGGCAAATACAAGGTCATTGGCAATGCCCAAGGCCAGGCAGTGCAGCAGTGGTCGACCGTCACGGGCAAGGCGCCCACGACCGTTAACCTTAACTGGCGTTGATGAAAAGTCGGGCAGGAGTACGCCTGTGCTcct           <  4:247246/148‑1 (MQ=255)                                                                                                                                     aaTTGCCTCCCGGCAAATACAAGGTCATTGGCAATGCCCAAGGCCAGGCAGTGCAGCAGTGGGCGACCGTCACGGGCAAGGCGCCCACGACCGTTAACCTTAACTGGCGTTGATGAAAAGTCGGGCAGGa                           >  2:163342/1‑130 (MQ=255)                                                                                                                                     aaTTGCCTCCCGGCAAATACAAGGTCATTGGCAATGCCCAAGGCCAGGCAGTGCAGCAGTGGGCGACCGTCACGGGCAAGGCGCCCACGACCGTTAACCTTAACTGGCGTTGATGAAAAGTCGGGCAGGa                           <  1:163342/130‑1 (MQ=255)                                                                                                                                          ccTCCCGGCAAATACAAGGTCATTGGCAATGCCCAAGGCCAGGCAGTGCAGCAGTGGGCGACCGTCACGGGCAAGGCGCCCACGACCGTTAACCTTAACTGGCGTTGATGAAAAGTCggg                                >  4:119738/1‑120 (MQ=255)                                                                                                                                            tCCCGGCAAATACAAGGTCATTGGCAATGCCCAAGGCCAGGCAGTGCAGCAGTGGGCGCCCGTCACGGGCAAGGCGCCCACGACCGTTAACCTTAACTGGCGTTGATGAAAAGTCGGGCAGGAGTACGCCTGTGCTCCTGCCTGGggt  >  1:201471/1‑148 (MQ=255)                                                                                                                                                    |                                                                                                                                            TTATGACCTGCACGTAGAGCTTTCGACCGGCCCGGAAGGCAAGTTCCAGAGCGGGGCTACCGTCGATATCCAGA‑ATGCCCAGGGCCAGCCCGTACTCAGTGTCAGCGATGCCGGGCCGCTGCTGTATGTGCAATTGCCTCCCGGCAAATACAAGGTCATTGGCAATGCCCAAGGCCAGGCAGTGCAGCAGTGGGCGACCGTCACGGGCAAGGCGCCCACGACCGTTAACCTTAACTGGCGTTGATGAAAAGTCGGGCAGGAGTACGCCTGTGCTCCTGCCTGGGGT  >  NC_002947/3572165‑3572450

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.