New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3729852 =	28 (0.490)	4 (0.070)	4/246	NT	12.6%	coding (341/435 nt)	PP_3296	putative transporter
	?	NC_002947	3729887 =	29 (0.540)					coding (376/435 nt)	PP_3296	putative transporter

GAGTTACACTCAGTAAGTGCCTTATTCTGATATCGATCAGAACTCAATTGTTTACCGTCAAACCCTGCCCTGATGACGGCTGCGAAACGCTTCCGCAACATTAAACACTCCCATACCGGCAAGCATCGCGAGCACGAATAGCCAGGCTTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3730003‑3729852 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcttgccGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGCCGTCATCAGGGCAGGGTTTGACGGTAAACAATTGAGTTCTGATCGATATCAGAATAAGGCACTTACTGAGTGTAACTCTACTAAATGAATATTTAGCGTAGTTATTCC  >  NC_002947/3729887‑3730033                                                                                                                                                                                                                                                                                                             GAGTTACACTCAGTAAGTGCCTTATTCTGATATCGATCAGAACTCAATTGTTTACCGTCAAACCCTGCCCTGATGACGGCTGCGAAACGCTTCCGCAACATTAAACACTCCCATACCGGCAAGCATCGCGAGCACGAATAGCCAGGCTT                                                                                                                                                        >  5:154370/1‑149    TTACACTCAGTAAGTGCCTTATTCTGATATCGATCAGAACTCAATTGTTTACCGTCAAACCCTGCCCTGATGACGGCTGCGAAACGCTTCCGCAACATTAAACACTCCCATACCGGCAAGCATCGCGAGCACGAATAGCCAGGCTTGCC                                                                                                                                                     <  4:81952/149‑1                                                                                                   CATTAAACACTCCCATACCGGCAAGCATCGCGAGCACGAATAGCCAGGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGCCGTCATCAGGGCAGGGTTTGACGGTAAACAATTGAGTTCTGATCGATA                                                              >  5:327255/1‑141                                                                                                   CATTAAACACTCCCATACCGGCAAGCATCGCGAGCACGAATAGCCAGGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGCCGTCATCAGGGCAGGGTTTGACGGTAAACAATTGAGTTCTGATCGATA                                                              <  6:327255/141‑1                                                                                                     TTAAACACTCCCATACCGGCAAGCATCGCGAGCACGAATAGCCAGGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGCCGTCATCAGGGCAGGGTTTGACGGTAAACAATTGAGTTCTGATCGATATCAGAATAAG                                                    >  6:113149/1‑149                                                                                                                                           TAGCCAGGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGCCGTCATCAGGGCAGGGTTTGACGGTAAACAATTGAGTTCTGATCGATATCAGAATAAGGCACTTACTGAGTGTAACTCTACTAAATGAATATTTAG              <  5:113149/149‑1                                                                                                                                                    TTGCCGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGCCGTCATCAGGGCAGGGTTTGACGGTAAACAATTGAGTTCTGATCGATATCAGAATAAGGCACTTACTGAGTGTAACTCTACTAAATGAATATTTAGCGTAGGTAT     >  4:40753/1‑149                                                                                                                                                       CCGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGCCGTCATCAGGGCAGGGTTTGACGGTAAACAATTGAGTTCTGATCGATATCAGAATAAGGCACTTACTGAGTGTAACTCTACTAAATGAATATTTAGCGTAGTTATTCC  <  3:81952/149‑1                                                                                                                                                                                                                                                                                                             GAGTTACACTCAGTAAGTGCCTTATTCTGATATCGATCAGAACTCAATTGTTTACCGTCAAACCCTGCCCTGATGACGGCTGCGAAACGCTTCCGCAACATTAAACACTCCCATACCGGCAAGCATCGCGAGCACGAATAGCCAGGCTTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3730003‑3729852 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcttgccGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGCCGTCATCAGGGCAGGGTTTGACGGTAAACAATTGAGTTCTGATCGATATCAGAATAAGGCACTTACTGAGTGTAACTCTACTAAATGAATATTTAGCGTAGTTATTCC  >  NC_002947/3729887‑3730033

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.