New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3729852 =	28 (0.490)	4 (0.070)	4/246	NT	12.6%	coding (341/435 nt)	PP_3296	putative transporter
	?	NC_002947	3729887 =	29 (0.540)					coding (376/435 nt)	PP_3296	putative transporter

CGGCCTTGCTGGGAAGTAAGATACAGCTGCCTGCCAGGCGCGACATCGACCGTCGACTCGTCGGGGGGAGCCTGGTTTTCGGCATAGGCTGGGGGCTTGCCGGCGTATGTCCGGGGCCGGTGCTGGTGTTACTCGCCGGGGGGTACTGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGCCGTCATCAGGGCAGGGTTTGACGGTAAACAATTGAGTTCTGATCGATATCAGAATAAGGCACTTACTGAGTGTAA  >  NC_002947/3729705‑3730000                                                                                                                                                    |                                                                                                                                                     ggaataactacgctaaatattcatttagtagagttacactcagtaagtgccttattctgatatcgatcagaactcaattgtttaccgtcaaaccctgccctgatgacggctgcgaaacgcttccgcaacattaaacactcccataccgg                                                                                                                                                     <  3:81952‑M1/2‑1 (MQ=255)    atacctacgctaaatattcatttagtagagttacactcagtaagtgccttattctgatatcgatcagaactcaattgtttaccgtcaaaccctgccctgatgacggctgcgaaacgcttccgcaacattaaacactcccataccGGCaa                                                                                                                                                  >  4:40753‑M1/145‑149 (MQ=255)             ctaaatattcatttagtagagttacactcagtaagtgccttattctgatatcgatcagaactcaattgtttaccgtcaaaccctgccctgatgacggctgcgaaacgcttccgcaacattaaacactcccataccGGCAAGCCTGGCTa                                                                                                                                         <  5:113149‑M1/14‑1 (MQ=255)              aaGTAAGATACAGCTGCCTGCCAGGCGCGACATCGACCGTCGACTCGTCGGGGGGAGCCTGGTTTTCGGCATAGGCTGGGGGCTTGCCGGCGTATGTCCGGGGCCGGTGCTGGTGTTACTCGCCGGGGGGTACTGGCAAGCCTGGCTAt                                                                                                                                        <  4:212632/149‑1 (MQ=255)                gTAAGATACAGCTGCCTGCCAGGCGCGACATCGACCGTCGACTCGTCGGGGGGAGCCTGGTTTTCGGCATAGGCTGGGGGCTTGCCGGCGTATGTCCGGGGCCGGTGCTGGTGTTACTCGCCGGGGGGTACTGGCAAGCCTGGCTATTc                                                                                                                                      >  6:45991/1‑149 (MQ=255)                           ctgcctgcCAGGCGCGACATCGACCGTCGACTCGTCGGGGGGAGCCTGGTTTTCGGCATAGGCTGGGGGCTTGCCGGCGTATGTCCGGGGCCGGTGCTGGTGTTACTCGCCGGGGGGTACTGGCAAGCCTGGCTATTCGTGCTCGCGAt                                                                                                                           >  3:190414/1‑149 (MQ=255)                            tgcctgccAGGCGCGACATCGACCGTCGACTCGTCGGGGGGAGCCTGGTTTTCGGCATAGGCTGGGGGCTTGCCGGCGTATGTCCGGGGCCGGTGCTGGTGTTACTCGCCGGGGGGTACTGGCAAGCCTGGCTATTCGTGCTCGCGATg                                                                                                                          >  3:177775/1‑149 (MQ=255)                                 gccAGGCGCGACATCGACCGTCGACTCGTCGGGGGGAGCCTGGTTTTCGGCATAGGCTGGGGGCTTGCCGGCGTATGTCCGGGGCCGGTGCTGGTGTTACTCGCCGGGGGGTACTGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGc                                                                                                                     >  7:3463/1‑149 (MQ=255)                                 gccAGGCGCGACATCGACCGTCGACTCGTCGGGGGGAGCCTGGTTTTCGGCATAGGCTGGGGGCTTGCCGGCGTATGTCCGGGGCCGGTGCTGGTGTTACTAGCCGGGGGGTACTGGCAAGCGTGGCTATTCGTGCTAGCGATGCTTGc                                                                                                                     >  5:73924/1‑149 (MQ=255)                                   cAGGCGCGACATCGACCGTCGACTCGTCGGGGGGAGCCTGGTTTTCGGCATAGGCTGGGGGCTTGCCGGCGTATGTCCGGGGCCGGTGCTGGTGTTCCTCGCCGGGGGGTACTGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCg                                                                                                                   <  5:45991/149‑1 (MQ=255)                                        gcgACATCGACCGTCGACTCGTCGGGGGGAGCCTGGTTTTCGGCATAGGCTGGGGGCTTGCCGGCGTATGTCCGGGGCCGGTGCTGGTGTTACTCGCCGGGGGGTACTGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATg                                                                                                              >  3:248319/1‑149 (MQ=255)                                         cgACATCGACCGTCGCCGCGTCGGGGGGAGCCTGGTTTTCGGCATAGGCTGGGGGCTTGCCGGCGTATGTCCGGGGCCGGTGCTGGGGTTACTCGCCGGGGGGTACTGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATgg                                                                                                             <  3:359099/149‑1 (MQ=255)                                             aTCGACCGTCGACTCGTCGGGGGGAGCCTGGTTTTCGGCATAGGCTGGGGGCTTGCCGGCGTATGTCCGGGGCCGGTGCTGGTGTTACTCGCCGGGGGGTACTGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAgt                                                                                                         <  2:253262/149‑1 (MQ=255)                                                   cttattctgatatcgatcagaactcaattgtttaccgtcaaaccctgccctgatgacggctgcgaaacgcttccgcaacattaaacactcccataccGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTaa                                                                                                   >  6:113149‑M1/98‑149 (MQ=255)                                                   cGTCGACTCGTCGGGGGGAGCCTGGTTTTCGGCATAGGCTGGGGGCTTGCCGGCGTATGTCCGGGGCCGGTGCTGGTGTTACTCGCCGGGGGGTACTGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTaa                                                                                                   <  8:3463/149‑1 (MQ=255)                                                        aCTCGTCGGGGGGAGCCTGGTTTGCGGCATCGGCGGGGGGCTTGCCGGCGAATGTCCGGGGCCGGTGCTGGTGTTCCTCGCCGGGGGGTACTGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATGTTg                                                                                              <  3:112969/149‑1 (MQ=255)                                                             tatcgatcagaactcaattgtttaccgtcaaaccctgccctgatgacggctgcgaaacgcttccgcaacattaaacactcccataccGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATg                                                                                                 <  6:327255‑M1/54‑1 (MQ=255)                                                             tatcgatcagaactcaattgtttaccgtcaaaccctgccctgatgacggctgcgaaacgcttccgcaacattaaacactcccataccGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATg                                                                                                 >  5:327255‑M1/88‑141 (MQ=255)                                                                  gggAGCCTGGTTTTCGGCATAGGCTGGGGGCTTGCCGGCGTATGTCCGGGGCCGGTGCTGGTGTTACTCGCCGGGGGGTACTGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGAAGCGtt                                                                                    >  4:107115/1‑149 (MQ=255)                                                                       ccTGGTTTTCGGCATAGGCTGGGGGCTTGCCGGCGTATGTCCGGGGCCGGTGCTGGTGTTACTCGCCGGGGGGTACTGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGTAGCGTTTCg                                                                                 >  6:99066/1‑147 (MQ=255)                                                                                  gCATAGGCTGGGGGCTTGCCGGCGTATGTCCGGGGCCGGTGCTGGTGTTACTCGCCGGGGGGTACTGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGCCGTCATcag                                                                    >  2:167747/1‑149 (MQ=255)                                                                                              ggCTTGCCGGCGTATGTCCGGGGCCGGTGCTGGTGTTACTCGCCGGGGGGTACTGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGCCGTCATCAGGGCAGGGTTTGa                                                        <  4:190414/149‑1 (MQ=255)                                                                                              ggCTGGCCGGCGTATGGCCGGGGCCGGGGCGGGGGGTACTCGCCGGGGGGTACTGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGCCGTCATCAGGGCAGGGTTTGa                                                        <  4:248319/149‑1 (MQ=255)                                                                                                   gCCGGCGTCCGTCCGGCGCCGGTGCTGGTGTCACTCGCCGGGGGGTACTGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGCCGTCATCAGGGCAGGGTTTGACGGt                                                    <  4:41928/148‑1 (MQ=255)                                                                                                       gCGTATGTCCGGGGCCGGTGCTGGTGTTACTCGCCGGGGGGTACTGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGCCGTCATcaggg                                                                  >  1:325534/1‑130 (MQ=255)                                                                                                         gTATGTCCGGGGCCGGTGCTGGTGTTACTCGCCGGGGGGTACTGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGCCGTCATCAGGGCAGGGTTTGACGGTAAACAAt                                             >  2:57256/1‑149 (MQ=255)                                                                                                          tATGTCCGGGGCCGGTGCTGGTGTTACTCGCCGGGGGGTACTGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGCCGTCATCAGGGCAGGGTTTGACGGTAAACAAtt                                            <  3:107115/149‑1 (MQ=255)                                                                                                            tGTCCGGGGCCGGTGCTGGTGTTACTCGCCGGGGGGTACTGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGCCGTCATCAGGGCAGGGTTTGACGGTAAACAATTGa                                          <  4:177775/149‑1 (MQ=255)                                                                                                                        gTGCGGGTGTTACTCGCCGGGGGGTACTGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGCCGTCATCAGGGCAGGGTTTGACGGTAAACAATTGAGTTCTGATCGat                              <  6:73924/149‑1 (MQ=255)                                                                                                                                   aCTCGCCGGGGGGTACTGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGTAGCGTTTCGCAGCCGTCATCAGGGCAGGGTTTGACGGTAAACAATTGAGTTCTGATCGATATCAGAATaa                    <  5:99066/148‑1 (MQ=255)                                                                                                                                   aCTCGCCGGGGGGTACTGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGCCGTCATCAGGGCAGGGTTTGACGGTAAACAATTGAGTTCTGATCGATATCAGAATAAg                   >  6:202708/1‑149 (MQ=255)                                                                                                                                    cTCGCCGGGGGGTACTGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGCCGTCATCAGGGCAGGGTTTGACGGTAAACAATTGAGTTCTGATCGATATCAGAATAAg                   <  1:167747/148‑1 (MQ=255)                                                                                                                                       gCCGGGGGGTACTGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGCCGTCATCAGGGCAGGGTTTGACGGTAAACAATTGAGTTCTGATCGATATCAGAATAAGGCAc               >  2:14032/1‑149 (MQ=255)                                                                                                                                              ggTACTGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGCCGTCATCAGGGCAGGGTTTGACGGTAAACAATTGAGTTCTGATCGATATCAGAATAAGGCACTTACTGa        <  1:57256/149‑1 (MQ=255)                                                                                                                                                 aCTGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGCCGTCATCAGGGCAGGGTTTGACGGTAAACAATTGAGTTCTGATCGATATCAGAATAAGGCACTTACTGAgtg     >  1:308570/1‑149 (MQ=255)                                                                                                                                                   tGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGCCGTCATCAGGGCAGGGTTTGACGGTAAACAATTg                                           <  5:308927/109‑1 (MQ=255)                                                                                                                                                   tGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGCCGTCATCAGGGCAGGGTTTGACGGTAAACAATTg                                           >  6:308927/1‑109 (MQ=255)                                                                                                                                                    GGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGCCGTCATCAGGGCAGGGTTTGACGGTAAACAATTGAGTTCTGATCGATATCAGAATAAGGCACTTACTGAGTGTaa  <  4:81952‑M1/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                     CGGCCTTGCTGGGAAGTAAGATACAGCTGCCTGCCAGGCGCGACATCGACCGTCGACTCGTCGGGGGGAGCCTGGTTTTCGGCATAGGCTGGGGGCTTGCCGGCGTATGTCCGGGGCCGGTGCTGGTGTTACTCGCCGGGGGGTACTGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGCCGTCATCAGGGCAGGGTTTGACGGTAAACAATTGAGTTCTGATCGATATCAGAATAAGGCACTTACTGAGTGTAA  >  NC_002947/3729705‑3730000

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.