New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3729852 =	28 (0.490)	4 (0.070)	4/246	NT	12.6%	coding (341/435 nt)	PP_3296	putative transporter
	?	NC_002947	3729887 =	29 (0.540)					coding (376/435 nt)	PP_3296	putative transporter

CAGGCGCGACATCGACCGTCGACTCGTCGGGGGGAGCCTGGTTTTCGGCATAGGCTGGGGGCTTGCCGGCGTATGTCCGGGGCCGGTGCTGGTGTTACTCGCCGGGGGGTACTGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGC‑‑‑CGTCATCAGGGCAGGGTTTGACGGTAAACAATTGAGTTCTGATCGATATCAGAATAAGGCACTTACTGAGTGTAACTCTACTAAATGAATATTTAGCGTAGTTATTCC  >  NC_002947/3729739‑3730033                                                                                                                                                     |                                                                                                                                                      cAGGCGCGACATCGACCGTCGACTCGTCGGGGGGAGCCTGGTTTTCGGCATAGGCTGGGGGCTTGCCGGCGTATGTCCGGGGCCGGTGCTGGTGTTCCTCGCCGGGGGGTACTGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCg                                                                                                                                                       <  5:45991/149‑1 (MQ=255)      gcgACATCGACCGTCGACTCGTCGGGGGGAGCCTGGTTTTCGGCATAGGCTGGGGGCTTGCCGGCGTATGTCCGGGGCCGGTGCTGGTGTTACTCGCCGGGGGGTACTGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATg                                                                                                                                                  >  3:248319/1‑149 (MQ=255)       cgACATCGACCGTCGCCGCGTCGGGGGGAGCCTGGTTTTCGGCATAGGCTGGGGGCTTGCCGGCGTATGTCCGGGGCCGGTGCTGGGGTTACTCGCCGGGGGGTACTGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATgg                                                                                                                                                 <  3:359099/149‑1 (MQ=255)           aTCGACCGTCGACTCGTCGGGGGGAGCCTGGTTTTCGGCATAGGCTGGGGGCTTGCCGGCGTATGTCCGGGGCCGGTGCTGGTGTTACTCGCCGGGGGGTACTGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAgt                                                                                                                                             <  2:253262/149‑1 (MQ=255)                 cttattctgatatcgatcagaactcaattgtttaccgtcaaaccctgccctgatgacggctgcgaaacgcttccgcaacattaaacactcccataccGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTaa                                                                                                                                       >  6:113149‑M1/98‑149 (MQ=255)                 cGTCGACTCGTCGGGGGGAGCCTGGTTTTCGGCATAGGCTGGGGGCTTGCCGGCGTATGTCCGGGGCCGGTGCTGGTGTTACTCGCCGGGGGGTACTGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTaa                                                                                                                                       <  8:3463/149‑1 (MQ=255)                      aCTCGTCGGGGGGAGCCTGGTTTGCGGCATCGGCGGGGGGCTTGCCGGCGAATGTCCGGGGCCGGTGCTGGTGTTCCTCGCCGGGGGGTACTGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATGTTg                                                                                                                                  <  3:112969/149‑1 (MQ=255)                           tatcgatcagaactcaattgtttaccgtcaaaccctgccctgatgacggctgcgaaacgcttccgcaacattaaacactcccataccGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATg                                                                                                                                     >  5:327255‑M1/88‑141 (MQ=255)                           tatcgatcagaactcaattgtttaccgtcaaaccctgccctgatgacggctgcgaaacgcttccgcaacattaaacactcccataccGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATg                                                                                                                                     <  6:327255‑M1/54‑1 (MQ=255)                                gggAGCCTGGTTTTCGGCATAGGCTGGGGGCTTGCCGGCGTATGTCCGGGGCCGGTGCTGGTGTTACTCGCCGGGGGGTACTGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGAAGCGtt                                                                                                                        >  4:107115/1‑149 (MQ=255)                                     ccTGGTTTTCGGCATAGGCTGGGGGCTTGCCGGCGTATGTCCGGGGCCGGTGCTGGTGTTACTCGCCGGGGGGTACTGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGTAGCGTTTCg                                                                                                                     >  6:99066/1‑147 (MQ=255)                                                gCATAGGCTGGGGGCTTGCCGGCGTATGTCCGGGGCCGGTGCTGGTGTTACTCGCCGGGGGGTACTGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGC‑‑‑CGTCATcag                                                                                                     >  2:167747/1‑149 (MQ=255)                                                            ggCTTGCCGGCGTATGTCCGGGGCCGGTGCTGGTGTTACTCGCCGGGGGGTACTGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGC‑‑‑CGTCATCAGGGCAGGGTTTGa                                                                                         <  4:190414/149‑1 (MQ=255)                                                            ggCTGGCCGGCGTATGGCCGGGGCCGGGGCGGGGGGTACTCGCCGGGGGGTACTGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGC‑‑‑CGTCATCAGGGCAGGGTTTGa                                                                                         <  4:248319/149‑1 (MQ=255)                                                                 gCCGGCGTCCGTCCGGCGCCGGTGCTGGTGTCACTCGCCGGGGGGTACTGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGC‑‑‑CGTCATCAGGGCAGGGTTTGACGGt                                                                                     <  4:41928/148‑1 (MQ=255)                                                                     gCGTATGTCCGGGGCCGGTGCTGGTGTTACTCGCCGGGGGGTACTGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGC‑‑‑CGTCATcaggg                                                                                                   >  1:325534/1‑130 (MQ=255)                                                                       gTATGTCCGGGGCCGGTGCTGGTGTTACTCGCCGGGGGGTACTGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGC‑‑‑CGTCATCAGGGCAGGGTTTGACGGTAAACAAt                                                                              >  2:57256/1‑149 (MQ=255)                                                                        tATGTCCGGGGCCGGTGCTGGTGTTACTCGCCGGGGGGTACTGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGC‑‑‑CGTCATCAGGGCAGGGTTTGACGGTAAACAAtt                                                                             <  3:107115/149‑1 (MQ=255)                                                                          tGTCCGGGGCCGGTGCTGGTGTTACTCGCCGGGGGGTACTGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGC‑‑‑CGTCATCAGGGCAGGGTTTGACGGTAAACAATTGa                                                                           <  4:177775/149‑1 (MQ=255)                                                                                      gTGCGGGTGTTACTCGCCGGGGGGTACTGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGC‑‑‑CGTCATCAGGGCAGGGTTTGACGGTAAACAATTGAGTTCTGATCGat                                                               <  6:73924/149‑1 (MQ=255)                                                                                               cattaaacactcccataccggcaagcatcgcgagcacgaatagccaggcttgccGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGC‑‑‑CGTCATCAGGGCAGGGTTTGACGGTAAACAATTGAGTTCTGATCGata                                                              <  6:327255‑M2/87‑1 (MQ=255)                                                                                               cattaaacactcccataccggcaagcatcgcgagcacgaatagccaggcttgccGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGC‑‑‑CGTCATCAGGGCAGGGTTTGACGGTAAACAATTGAGTTCTGATCGata                                                              >  5:327255‑M2/55‑141 (MQ=255)                                                                                                 ttaaacactcccataccggcaagcatcgcgagcacgaatagccaggcttgccGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGC‑‑‑CGTCATCAGGGCAGGGTTTGACGGTAAACAATTGAGTTCTGATCGATATCAGAATAAg                                                    >  6:113149‑M2/53‑149 (MQ=255)                                                                                                 aCTCGCCGGGGGGTACTGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGTAGCGTTTCGCAGC‑‑‑CGTCATCAGGGCAGGGTTTGACGGTAAACAATTGAGTTCTGATCGATATCAGAATaa                                                     <  5:99066/148‑1 (MQ=255)                                                                                                 aCTCGCCGGGGGGTACTGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGC‑‑‑CGTCATCAGGGCAGGGTTTGACGGTAAACAATTGAGTTCTGATCGATATCAGAATAAg                                                    >  6:202708/1‑149 (MQ=255)                                                                                                  cTCGCCGGGGGGTACTGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGC‑‑‑CGTCATCAGGGCAGGGTTTGACGGTAAACAATTGAGTTCTGATCGATATCAGAATAAg                                                    <  1:167747/148‑1 (MQ=255)                                                                                                     gCCGGGGGGTACTGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGC‑‑‑CGTCATCAGGGCAGGGTTTGACGGTAAACAATTGAGTTCTGATCGATATCAGAATAAGGCAc                                                >  2:14032/1‑149 (MQ=255)                                                                                                            ggTACTGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGC‑‑‑CGTCATCAGGGCAGGGTTTGACGGTAAACAATTGAGTTCTGATCGATATCAGAATAAGGCACTTACTGa                                         <  1:57256/149‑1 (MQ=255)                                                                                                               aCTGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGC‑‑‑CGTCATCAGGGCAGGGTTTGACGGTAAACAATTGAGTTCTGATCGATATCAGAATAAGGCACTTACTGAgtg                                      >  1:308570/1‑149 (MQ=255)                                                                                                                cagggaaGCCTGGCGATTCGTGCTCGCGATGCTTGCCGGTATTGGTGTGTTTAATTTTGTGGAATCGTTTTGCAGCTTAGGTCATCAGGGCAGGGTTTGACGGTAAACAATTGAGTTCTGATCGATATCAGAATAAGGCACTTACTGAg                                        <  1:293505/144‑1 (MQ=255)                                                                                                                 tGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGC‑‑‑CGTCATCAGGGCAGGGTTTGACGGTAAACAATTg                                                                            >  6:308927/1‑109 (MQ=255)                                                                                                                 tGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGC‑‑‑CGTCATCAGGGCAGGGTTTGACGGTAAACAATTg                                                                            <  5:308927/109‑1 (MQ=255)                                                                                                                  GGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGC‑‑‑CGTCATCAGGGCAGGGTTTGACGGTAAACAATTGAGTTCTGATCGATATCAGAATAAGGCACTTACTGAGTGTaa                                   <  4:81952‑M1/149‑1 (MQ=255)                                                                                                                     AAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGC‑‑‑CGTCATCAGGGCAGGGTTTGACGGTAAACAATTGAGTTCTGATCGATATCAGAATAAGGCACTTACTGAGTGTAActc                                >  5:154370‑M1/1‑149 (MQ=255)                                                                                                                             cTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGC‑‑‑CGTCATCAGGGCAGGGTTTGACGGTAAACAATTGAGTTCTGATCGATATCAGAATaa                                                     <  2:186847/120‑1 (MQ=255)                                                                                                                              tATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGC‑‑‑CGTCATCAGGGCAGGGTTTGACGGTAAACAATTGAGTTCTGATCGATATCAGAATAAGGCACTTACTGAGTGTAACTCTACTAAAt                        >  8:41291/1‑148 (MQ=255)                                                                                                                                   gTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGC‑‑‑CGTCATCAGGGCAGGGTTTGACGGTAAACAATTGAGTTCTGATCGatat                                                             <  7:208057/106‑1 (MQ=255)                                                                                                                                   gTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGC‑‑‑CGTCATCAGGGCAGGGTTTGACGGTAAACAATTGAGTTCTGATCGatat                                                             >  8:208057/1‑106 (MQ=255)                                                                                                                                       tagccaggcttgccGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGC‑‑‑CGTCATCAGGGCAGGGTTTGACGGTAAACAATTGAGTTCTGATCGATATCAGAATAAGGCACTTACTGAGTGTAACTCTACTAAATGAATATTTAg              <  5:113149‑M2/135‑1 (MQ=255)                                                                                                                                            aTGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGC‑‑‑CGTCATCAGGGCAGGGTTTGACGGTAAACAATTGAGTTCTGATCGATATCAGAATAAGGCACTTACTGAGTGTAACTCTACTAAATGAATATTTAGCGTAg         >  6:101089/1‑149 (MQ=255)                                                                                                                                            aTGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGC‑‑‑CGTCATCAGGGCAGGGTTTGACGGTAAACAATTGAGTTCTGATCGATATCAGAATAAGGCACTTACTGAGTGTAACTCTACTAAATGAATATTTAGCGTAg         <  5:202708/149‑1 (MQ=255)                                                                                                                                             tGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGC‑‑‑CGTCATCAGGGCAGGGTTTGACGGTAAACAATTGAGTTCTGATCGATATCAGAATAAGGCACTTACTGAGTGTAACTCTACTAAATGAATATTTAGCGTAGt        <  2:308570/149‑1 (MQ=255)                                                                                                                                                ttgccGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGC‑‑‑CGTCATCAGGGCAGGGTTTGACGGTAAACAATTGAGTTCTGATCGATATCAGAATAAGGCACTTACTGAGTGTAACTCTACTAAATGAATATTTAGCGTAGGTAt     >  4:40753‑M2/6‑149 (MQ=255)                                                                                                                                                   ccGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGC‑‑‑CGTCATCAGGGCAGGGTTTGACGGTAAACAATTGAGTTCTGATCGATATCAGAATAAGGCACTTACTGAGTGTAACTCTACTAAATGAATATTTAGCGTAGTTATTcc  <  3:81952‑M2/147‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                      CAGGCGCGACATCGACCGTCGACTCGTCGGGGGGAGCCTGGTTTTCGGCATAGGCTGGGGGCTTGCCGGCGTATGTCCGGGGCCGGTGCTGGTGTTACTCGCCGGGGGGTACTGGCAAGCCTGGCTATTCGTGCTCGCGATGCTTGCCGGTATGGGAGTGTTTAATGTTGCGGAAGCGTTTCGCAGC‑‑‑CGTCATCAGGGCAGGGTTTGACGGTAAACAATTGAGTTCTGATCGATATCAGAATAAGGCACTTACTGAGTGTAACTCTACTAAATGAATATTTAGCGTAGTTATTCC  >  NC_002947/3729739‑3730033

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.