New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3852476	48 (0.850)	6 (0.110)	5/242	NT	10.9%	intergenic (+22/‑137)	PP_3399/alkB	minor curlin subunit CsgB/alpha‑ketoglutarate‑ and Fe(II)‑dependent dioxygenase
	?	NC_002947	= 3852493	53 (1.010)					intergenic (+39/‑120)	PP_3399/alkB	minor curlin subunit CsgB/alpha‑ketoglutarate‑ and Fe(II)‑dependent dioxygenase

CAGCATCAACGTCGCCTACGTGACCCAGGGAGGCCAAAGCAACAAGGCGTTCGTCGACCAGAGTGGTGTCGCCCAATCCGCCACCATCACCCAGCTGGGCAGCGCGAACCTGGCCACTGTGACCCAGCAGTAAACCGCTCCCCCTTGAACCGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3852322‑3852476 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaccgcggCACCAGGGAGAGGAGCACCGCGGTTCAAGG  <  NC_002947/3852493‑3852464                                                                                                                                                                                           CAGCATCAACGTCGCCTACGTGACCCAGGGAGGCCAAAGCAACAAGGCGTTCGTCGACCAGAGTGGTGTCGCCCAATCCGCCACCATCACCCAGCTGGGCAGCGCGAACCTGGCCACTGTGACCCAGCAGTAAACCGCTCCCCCTTGAA                                      <  1:61188/149‑1    CATCAACGTCGCCTACGTGACCCAGGGAGGCCAAAGCAACAAGGCGTTCGTCGTCCAGAGTGGTGTCGCCCAATCCGCCACCATCACCCAGCTGGGCAGCGCGAACCTGGCCACTGTGACCCAGCAGTAAACCGCTCCCCCTTGAACCG                                   >  1:276297/1‑149    CATCAACGTCGCCTACGTGACCCAGGGAGGCCAAAGCAACAAGGCGTTCGTCGACCAGAGTGGTGTCGCCCAATCCGCCACCATCACCCAGCTGGGCAGCGCGAACCTGGCCACTGTGACCCAGCAGTAAACCGCTCCCCCTTGAACCG                                   >  5:118983/1‑149                         CCAGGGAGGCCAAAGCAACAAGGCGTTCGTCGACCAGAGTGGTGTCGCCCAATCCGCCACCATCACCCAGCTGGGCAGCGCGAACCTGGCCACTGTGACCCAGCAGTAAACCGCTCCCCCTTGAACCGCGGCACCAGGGAGAGGAGCAC              >  4:54245/1‑149                                   CAAAGCAACAAGGCGTTCGTCGACCAGAGTGGTGTCGCCCAATCCGCCACCATCACCCAGCTGGGCAGCGCGAACCTGGCCACTGTGACCCAGCAGTAAACCGCTCCCCCTTGAACCGCGGCACCAGGGAGAGGAGCACCGCGGTTCAA    <  3:54245/149‑1                                                        GACCAGAGTGGTGTCGCCCAATCCGCCACCATCACCCAGCTGGGCAGCGCGAACCTGGCCACTGTGACCCAGCAGTAAACCGCTCCCCCTTGAACCGCGGCACCAGGGAGAGGAGCACCGCGGTTCAAGG  >  5:167264/1‑130                                                        GACCAGAGTGGTGTCGCCCAATCCGCCACCATCACCCAGCTGGGCAGCGCGAACCTGGCCACTGTGACCCAGCAGTAAACCGCTCCCCCTTGAACCGCGGCACCAGGGAGAGGAGCACCGCGGTTCAAGG  <  6:167264/130‑1                                                        GACCAGAGTGGTGTCGCCCAATCCGCCACCATCACCCAGCTGGGCAGCGCGAACCTGGCCACTGTGACCCAGCAGTAAACCGCTCCCCCTTGAACCGCGGCACCAGGGAGAGGAGCACCGCGGTTCAAG   <  1:39417/129‑1                                                        GACCAGAGTGGTGTCGCCCAATCCGCCACCATCACCCAGCTGGGCAGCGCGAACCTGGCCACTGTGACCCAGCAGTAAACCGCTCCCCCTTGAACCGCGGCACCAGGGAGAGGAGCACCGCGGTTCAAG   >  2:39417/1‑129                                                                                                                                                                                           CAGCATCAACGTCGCCTACGTGACCCAGGGAGGCCAAAGCAACAAGGCGTTCGTCGACCAGAGTGGTGTCGCCCAATCCGCCACCATCACCCAGCTGGGCAGCGCGAACCTGGCCACTGTGACCCAGCAGTAAACCGCTCCCCCTTGAACCGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3852322‑3852476 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaccgcggCACCAGGGAGAGGAGCACCGCGGTTCAAGG  <  NC_002947/3852493‑3852464

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.