| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3936535 | 53 (0.940) | 3 (0.060) | 3/246 | NT | 5.9% | coding (321/969 nt) | PP_3469 | hypothetical protein |
| ? | NC_002947 | = 3936553 | 46 (0.860) | coding (339/969 nt) | PP_3469 | hypothetical protein | |||||
CCAGATCACCCATAACCCGCAGTACGGAAAACACCTCCTTACCGCAGGCTTACACCTCATACGGCTACGAGCAACCGCCAGAGCCCACGCTCAAATTAACGGGTTTTACCGGCCAACCCCGATCAGTATCTGCACATTTATACCTGATGGGCAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3936381‑3936535‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcagtATTATAGGCACGGCGCCCACTGCCCATCAGGTATAAATGTGCAGATACTGATCGGGGTTGGCCGGTAAAACCCGTTAATTTGAGCGTGGGCTCTGGCGGTTGCTCGTAGCCGTATGAGGTGTAAGCCTGCGGTAAGGAGGTGTTT < NC_002947/3936553‑3936409 CCAGATCACCCATAACCCGCAGTACGGAAAACACCTCCTTACCGCAGGCTTACACCTCATACGGCTACGAGCAACCGCCAGAGCCCACGCTCAAATTAACGGGTTTTACCGGCCAACCCCGATCAGTATCTGCACATTTATACCTGATG < 6:146076/149‑1 AGATCACCCATAACCCGCAGTACGGAAAACACCTCCTTACCGCAGGCTTACACCTCATACGGCTACGAGCAACCGCCAGAGCCCACGCTCAAATTAACGGGTTTTACCGGCCAACCCCGATCAGTATCTGCACATTTATACCTGATGGG > 6:272168/1‑149 CTTACCGCAGGCTTACACCTCATACGGCTACGAGCAACCGCCAGAGCCCACGCTCAAATTAACGGGTTTTACCGGCCAACCCCGATCAGTATCTGCACATTTATACCTGATGGGCAGTATTATAGGCACGGCGCCCACTGCCCATCAGG > 5:137894/1‑149 CCGCAGGCTTACACCTCATACGGCTACGAGCAACCGCCAGAGCCCACGCTCAAATTAACGGGTTTTACCGGCCAACCCCGATCAGTATCTGCACATTTATACCTGATGGGCAGTATTATAGGCACGGCGCCCACTGCCCATCAGGTAT < 2:184867/148‑1 CCTCATACGGCTACGAGCAACCGCCAGAGCCCACGCTCAAATTAACGGGTTTTACCGGCCAACCCCGATCAGTATCTGCACATTTATACCTGATGGGCAGTATTATAGGCACGGCGCCCACTGCCCATCAGGTATAAATGTGCAGATAC < 6:137894/149‑1 ctGTATTATAGGCACGGCTCCCTCTGGCGATCAGGTATAAATGTGCAGATACTGATCGGGGTTGGCCGGTTAAACCCGTTAATTTCAGGGTGGGCTCTTGCGGTTGCTCGTAGCCGTATGAGGTGTAAGCCTGCGGTAAGGAGGTGTTT < 7:82553/147‑1 TATTATAGGCACGGCGCCCACTGCCCATCAGGTATAAATGTGCAGATACTGATCGGGGTTGGCCGGTAAAACCCGTTAATTTGAGCGTGGGCTCTGGCGGTTGCTCGTAGCCGTATGAGGTGTAAGCCTGCGGTAAGGAGGTGTTT < 3:314288/146‑1 TATTATAGGCACGGCGCCCACTGCCCATCAGGTATAAATGTGCAGATACTGATCGGGGTTGGCCGGTAAAACCCGTTAATTTGAGCGTGGGCTCTGGCGGTTGCTCGTAGCCGTATGAGGTGTAAGCCTGCGGTAAGGAGGTGTTT > 4:314288/1‑146 CCAGATCACCCATAACCCGCAGTACGGAAAACACCTCCTTACCGCAGGCTTACACCTCATACGGCTACGAGCAACCGCCAGAGCCCACGCTCAAATTAACGGGTTTTACCGGCCAACCCCGATCAGTATCTGCACATTTATACCTGATGGGCAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3936381‑3936535‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcagtATTATAGGCACGGCGCCCACTGCCCATCAGGTATAAATGTGCAGATACTGATCGGGGTTGGCCGGTAAAACCCGTTAATTTGAGCGTGGGCTCTGGCGGTTGCTCGTAGCCGTATGAGGTGTAAGCCTGCGGTAAGGAGGTGTTT < NC_002947/3936553‑3936409 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |