New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3936535	53 (0.940)	3 (0.060)	3/246	NT	5.9%	coding (321/969 nt)	PP_3469	hypothetical protein
	?	NC_002947	= 3936553	46 (0.860)					coding (339/969 nt)	PP_3469	hypothetical protein

AAACACCTCCTTACCGCAGGCTTACACCTCATACGGCTACGAGCAACCGCCAGAGCCCACGCTCAAATTAACGGGTTTTACCGGCCAACCCCGATCAGTATCTGCACATTTATACCTGATGGGCAGTGGGCGCCGTGCCTATAATACTGCCCTCATGCGCTTCTGTTCTCCTGACTATCTAAGTCCATTTTCGAAAGGTGGGATCAACGCTTACGTTTACTGCAACA‑ATGACCCCACAAATTACTCAGATCAATCGGGTCGCGTCAGGACACCTCACCTAGGTACCGCC  >  NC_002947/3936409‑3936697                                                                                                                                                 |                                                                                                                                                  aaaCACCTCCTTACCGCAGGCTTACACCTCATACGGCTACGAGCAACCGCCAGAGCCCACGCTCAAATTAACGGGTTTTACCGGCCAACCCCGATCAGTATCTGCACATTTATACCTGATGGGCAGTGGGCGCCGTGCCTATAATa                                                                                                                                                  <  3:314288‑M2/146‑2 (MQ=255) aaaCACCTCCTTACCGCAGGCTTACACCTCATACGGCTACGAGCAACCGCCAGAGCCCACGCTCAAATTAACGGGTTTTACCGGCCAACCCCGATCAGTATCTGCACATTTATACCTGATGGGCAGTGGGCGCCGTGCCTATAATa                                                                                                                                                  >  4:314288‑M2/1‑145 (MQ=255) aaaCACCTCCTTACCGCAGGCTTACACCTCATACGGCTACGAGCAACCGCAAGAGCCCACCCTGAAATTAACGGGTTTAACCGGCCAACCCCGATCAGTATCTGCACATTTATACCTGATCGCCAGAGGGAGCCGTGCCTATAATacag                                                                                                                                               <  7:82553‑M2/149‑5 (MQ=255)      cctcctTACCGCAGGCTTACACCTCATACGGATACGAGCAACCGCCAGAGCCCACGCTCAAATTAACGGGTTTTACCGGCCCACCCCGATCAGTATCTGCACATTTATACCTGATGGGCAGTGGGCGCCGTGCCTATAATACTTCCCt                                                                                                                                           >  2:206472/1‑148 (MQ=255)         cctTACCGCAGGCTTACACCTCATACGGCTACGAGCAACCGCCAGAGCCCACGCTCAAATTAACGGGTTTTACCGGCCAACCCCGATCAGTATCTGCACATTTATACCTGATGGGCAGTGGGCGCCGTGCCTATAATACTGCCCTCATg                                                                                                                                       >  7:103383/1‑149 (MQ=255)          ctTACCGCAGGCTTACACCTCATACGGCTACGAGCAACCGCCAGAGCCCACGCTCAAATTAACGGGTTTTACCGGCCAACCCCGATCAGTATCTGCACATTTATACCTGATGGGCAGTGGGCGCCGTGCCTATAATACTGCCCTc                                                                                                                                          >  6:138152/1‑145 (MQ=255)          ctTACCGCAGGCTTACACCTCATACGGCTACGAGCAACCGCCAGAGCCCACGCTCAAATTAACGGGTTTTACCGGCCAACCCCGATCAGTATCTGCACATTTATACCTGATGGGCAGTGGGCGCCGTGCCTATAATACTGCCCTc                                                                                                                                          <  5:138152/145‑1 (MQ=255)               cGCAGGCTTACACCTCATACGGCTACGAGCAACCGCCAGAGCCCACGCTCAAATTAACGGGTTTTACCGGCCAACCCCGATCAGTATCTGCACATTTATACCTGATGGGCAGTGGGCGCCGTGCCTATAATACTGCCCTc                                                                                                                                          <  4:148159/140‑1 (MQ=255)               cGCAGGCTTACACCTCATACGGCTACGAGCAACCGCCAGAGCCCACGCTCAAATTAACGGGTTTTACCGGCCAACCCCGATCAGTATCTGCACATTTATACCTGATGGGCAGTGGGCGCCGTGCCTATAATACTGCCCTc                                                                                                                                          >  3:148159/1‑140 (MQ=255)                gCAGGCTTACACCTCATACGGCTACGAGCAACCGCCAGAGCCCACGCTCAAATTAACGGGTTTTACCGGCCAACCCCGATCAGTATCTGCACATTTATACCTGATGGGCAGTGGGCGCCGTGCCTATAATACTGCCCTCATGCGCTTCt                                                                                                                                <  5:157150/149‑1 (MQ=255)                 cAGGCTTACACCTCATACGGCTACGAGCAACCGCCAGAGCCCACGCTCAAATTAACGGGTTTTACCGGCCAACCCCGATCAGTATCTGCACATTTATACCTGATGGGCAGTGGGCGCCGTGCCTATAATACTGCCCTCATGCGCTTCTg                                                                                                                               >  6:148015/1‑149 (MQ=255)                      ttACACCTCATACGGCTACGAGCAACCGCCAGAGCCCACGCTCAAATTAACGGGTTTTACCGGCCAACCCCGATCAGTATCTGCACATTTATACCTGATGGGCAGTGGGCGCCGTGCCTATAATACTGCCCTCATGCGCTTCTGTtctc                                                                                                                          >  5:18510/1‑149 (MQ=255)                      ttACACCTCATACGGCTACGAGCAACCGCCAGAGCCCACGCTCAAATTAACGGGTTTTACCGGCCAACCCCGATCAGTATCTGCACATTTATACCTGATGGGCAGTGGGCGCCGTGCCTATAATACTGCCCTCATGCGCTTCTGTtctc                                                                                                                          >  4:255947/1‑149 (MQ=255)                         cacCTCATACGGCTACGAGCAACCGCCAGAGCCCACGCTCAAATTAACGGGTTTTACCGGCCAACCCCGATCAGTATCTGCACATTTATACCTGATGGGCAGTGGGCGCCGTGCCTATAATACTGCCCTCATGCGCTTCTGTTCTCCt                                                                                                                        <  6:18510/148‑1 (MQ=255)                                tACGGCTACGAGCAACCGCCAGAGCCCACGCTCAAATTAACGGGTTTTACCGGCCAACCCCGATCAGTATCTGCACATTTATACCTGATGGGCAGTGGGCGCCGTGCCTATAATACTGCCCTCATGCGCTTCTGTTCTCCTGACTATCt                                                                                                                <  8:55870/149‑1 (MQ=255)                                  cGGCTACGAGCAACCGCCAGAGCCCACGCTCAAATTAACGGGTTTTACCGGCCAACCCCGATCAGTATCTGCACATTTATACCTGATGGGCAGTGGGCGCCGTGCCTATAATACTGCCCTCATGCGCTTCTGTTCTCCTGACTATCt                                                                                                                >  2:209234/1‑147 (MQ=255)                                   gtcTACGAGCAACCGCCAGAGCCCACGCTCAAATTAACGGGTTTTACCGGCCAACCCCGATCAGTATCTGCACATTTATACCTGATGGGCAGTGGGCGCCGTGCCTATAATACTGCCCTCATGCGCTTCTGTTCTCCTGACTATCTAAg                                                                                                             <  4:207686/147‑1 (MQ=255)                                   ggCTACGAGCAACCGCCAGAGCCCACGCTCAAATTAACGGGTTTTACCGGCCAACCCCGATCAGTATCTGCACATTTATACCTGATGGGCAGTGGGCGCCGTGCCTATAATACTGCCCTCATGCGCTTCTGTTCTCCTGACTATCTAAg                                                                                                             <  5:272168/149‑1 (MQ=255)                                    gCTACGAGCAACCGCCAGAGTCCACGCTCAAATTAACGGGTTTTACCGGCCAACCCCGATCAGTATCTTCACATTTATACCTGATGGGCAGTGGGCGCCGTGCCTATAATACTGCCCTCATGCGCTTCTGTTCTCCTGACTATCTAAGt                                                                                                            <  5:254784/149‑1 (MQ=255)                                         gAGCAACCGCCAGAGCCCACGCTCAAATTAACGGGTTTTACCGGCCAACCCCGATCAGTATCTGCACATTTATACCTGATGGGCAGTGGGCGCCGTGCCTATAATACTGCCCTCATGCGCTTCTGTTCTCCTGACTATCTaa                                                                                                              >  5:328197/1‑142 (MQ=255)                                         gAGCAACCGCCAGAGCCCACGCTCAAATTAACGGGTTTTACCGGCCAACCCCGATCAGTATCTGCACATTTATACCTGATGGGCAGTGGGCGCCGTGCCTATAATACTGCCCTCATGCGCTTCTGTTCTCCTGACTATCTaa                                                                                                              <  6:328197/142‑1 (MQ=255)                                         gAGCAACCGCCAGAGCCCACGCTCAAATTAACGGGTTTTACCGGCCAACCCCGATCAGTATCTGCACATTTATACCTGATGGGCAGTGGGCGCCGTGCCTATAATACTGCCCTCATGCGCTTCTGTTCTCCTGACTATCTAAGTCCAtt                                                                                                       <  3:255947/149‑1 (MQ=255)                                         gAGCAACCGCCAGAGCCCACGCTCAAATTAACGGGTTTTACCGGCCAACCCCGATCAGTATCTGCACATTTATACCTGATGGGCAGTGGGCGCCGTGCCTATAATACTGCCCTCATGCGCTTCTGTTCTCCTGACTATCTAAGTCCAtt                                                                                                       >  3:11113/1‑149 (MQ=255)                                          aGCAACCGCCAGAGCCCACGCTGAAATTAACGGGTTTTACCGTCCAACGCCGATCAGTATCTGCACATTTATACCTGATGGGCAGTGGGCGCCGTGCCTATAATACTGCCCTCATGCGCTTCTGTTCTCCTGACTATCTTAGTCCAttt                                                                                                      <  8:82553/149‑1 (MQ=255)                                               ccGCCAGAGCCCACGCTCAAATTAACGGGTTTTACCGGCCAACCCCGATCAGTATCTGCACATTTATACCTGATGGGCAGTGGGCGCCGTGCCTATAATACTGCCCTCATGCGCTTCTGTTCTCCTGACTATCTAAGTCCATTTTCGaa                                                                                                 <  8:103383/149‑1 (MQ=255)                                                  ccAGAGCCCACGCTCAAATTAACGGGTTTTACCGGCCAACCCCGATCAGTATCTGCACATTTATACCTGATGGGCAGTGGGCGCCGTGCCTATAATACTGCCCTCATGCGCTTCt                                                                                                                                <  6:45581/115‑1 (MQ=255)                                                  ccAGAGCCCACGCTCAAATTAACGGGTTTTACCGGCCAACCCCGATCAGTATCTGCACATTTATACCTGATGGGCAGTGGGCGCCGTGCCTATAATACTGCCCTCATGCGCTTCt                                                                                                                                >  5:45581/1‑115 (MQ=255)                                                   cAGAGCCCACGCTCAAATTAACGGGTTTTACCGGCCAACCCCGATCAGTATCTGCACATTTATACCTGATGGGCAGTGGGCGCCGTGCCTATAATACTGCCCTCATGCGCTTCTGTTCTCCTGACTATCTAAGTCCATTTTCGAAAGGt                                                                                             <  1:234280/149‑1 (MQ=255)                                                    agagCCCACGCTCAAATTAACGGGTTTTACCGGCCAACCCCGATCAGTATCTGCACATTTATACCTGATGGGCAGTGGGCGCCGTGCCTATAATACTGCCCTCATGCGCTTCTGTTCTCCTGACTATCTAAGTCCATTTTCGAAAGGTg                                                                                            <  5:148015/149‑1 (MQ=255)                                                       gCCCACGCTCAAATTAACGGGTTTTACCGGCCAACCCCGATCAGTATCTGCACATTTATACCTGATGGGCAGTGGGCGCCGTGCCTATAATACTGCCCTCATGCGCTTCTGTTCTCCTGACTATCTAAGTCCATTTTCGAAAGGTggg                                                                                          <  8:70641/148‑1 (MQ=255)                                                         ccACGCTCAAATTAACGGGTTTTACCGGCCAACCCCGATCAGTATCTGCACATTTATACCTGATGGGCAGTGGGCGCCGTGCCTATAATACTGCCCTCATGCGCTTCTGTtctc                                                                                                                          <  6:232383/114‑1 (MQ=255)                                                         ccACGCTCAAATTAACGGGTTTTACCGGCCAACCCCGATCAGTATCTGCACATTTATACCTGATGGGCAGTGGGCGCCGTGCCTATAATACTGCCCTCATGCGCTTCTGTtctc                                                                                                                          <  6:237795/114‑1 (MQ=255)                                                         ccACGCTCAAATTAACGGGTTTTACCGGCCAACCCCGATCAGTATCTGCACATTTATACCTGATGGGCAGTGGGCGCCGTGCCTATAATACTGCCCTCATGCGCTTCTGTtctc                                                                                                                          >  5:237795/1‑114 (MQ=255)                                                         ccACGCTCAAATTAACGGGTTTTACCGGCCAACCCCGATCAGTATCTGCACATTTATACCTGATGGGCAGTGGGCGCCGTGCCTATAATACTGCCCTCATGCGCTTCTGTtctc                                                                                                                          >  5:232383/1‑114 (MQ=255)                                                                      aaCGGGTTTTACCGGCCAACCCCGATCAGTATCTGCACATTTATACCTGATGGGCAGTGGGCGCCGTGCCTATAATACTGCCCTCATGCGCTTCTGTTCTCCTGACTATCTAAGTCCATTTTCGAAAGGTGGGATCAACGCTTACGtt                                                                           >  6:326350/1‑148 (MQ=255)                                                                                   ggCCAACCCCGATCAGTATCTGCACATTTATACCTGATGGGCAGTGGGCGCCGTGCCTATAATACTGCCCTCATGCGCTTCTGTTCTCCTGACTATCTAAGTCCATTTTCGAAAGGTGGGATCAACGCTTACGTTTACTGCAACA‑ATGa                                                            <  1:209234/149‑1 (MQ=255)                                                                                    gCCAACCCCGATCAGTATCTGCACATTTATACCTGATGGGCAGTGGGCGCCGTGCCTATAATACTGCCCTCATGCGCTTCTGTTCTCCTGACTATCTAAGTCCATTTTCGAAAGGTGGGATCAACGCTTACGTTTACTGCAACA‑ATGAc                                                           >  4:186737/1‑149 (MQ=255)                                                                                             gATCAGTATCTGCACATTTATACCTGATGGGCAGTGGGCGCCGTGCCTATAATACTGCCCTCATGCGCTTCTGTTCTCCTGACTATCTAAGTCCATTTTCGAAAGGTGGGATCAACGCTTACGTTTACTGCAACA‑ATGACCCCACAAAt                                                  <  5:326350/149‑1 (MQ=255)                                                                                                  gTATCTGCACATTTATACCTGATGGGCAGTGGGCGCCGTGCCTATAATactgcccatcaggtataaatgtgcagatactgatcggggttggccggtaaaacccgttaatttgagcgtgggctctggcggttgctcgtagccgtatgagg                                              <  6:137894‑M2/149‑102 (MQ=255)                                                                                                  gTATCTGCACATTTATACCTGATGGGCAGTGGGCGCCGTGCCTATAATACTGCCCTCATGCGCTTCTGTTCTCCTGACTATCTAAGTCCATTTTCGAAAGGTGGGATCAACGCTTACGTTTACTGCAACA‑ATGACCCCACAAATTACt                                              >  5:333074/1‑148 (MQ=255)                                                                                                  gTATCTGCACATTTATACCTGATGGGCAGTGGGCGCCGTGCCTATAATACTGCCCTCATGCGCTTCTGTTCTCCTGACTATCTAAGTCCATTTTCGAAAGGTGGGATCAACGCTTACGTTTACTGCAACA‑ATGACCCCACAAATTACTc                                             <  3:186737/149‑1 (MQ=255)                                                                                                        gCACATTTATACCTGATGGGCAGTGGGCGCCGTGCCTATAATACTGCCCTCATGCGCTTCTGTTCTCCTGACTATCTAAGTCCATTTTCGAAAGGTGGGATCAACGCTTACGTTTACTGCAACA‑ATGACCCCACAAATTACTCAGATc                                        >  8:257762/1‑148 (MQ=255)                                                                                                         cacaTTTATACCTGATGGGCAGTGGGCGCCGTGCCTATAATACTGCCCTCATGCGCTTCTGTTCTCCTGACTATCTAAGTCCATTTTCGAAAGGTGGGATCAACGCTTACGTTTACTGCAACA‑ATGACCCCACAAATTACTCAGAt                                         <  4:11113/146‑1 (MQ=255)                                                                                                            aTTTATACCTGATGGGCAGTGGGCGCCGTGCCTATAATACTGCCCTCATGCGCTTCTGTTCTCCTGACTATCTAAGTCCATTTTCGAAAGGTGGGATCAACGCTTACGTTTACTGCAACA‑ATGACCCCACAAATTACTCa                                            >  8:224070/1‑140 (MQ=255)                                                                                                            aTTTATACCTGATGGGCAGTGGGCGCCGTGCCTATAATACTGCCCTCATGCGCTTCTGTTCTCCTGACTATCTAAGTCCATTTTCGAAAGGTGGGATCAACGCTTACGTTTACTGAAACA‑ATGACCCCACAAATTACTCa                                            <  7:224070/140‑1 (MQ=255)                                                                                                                ataCCTGATGGGCAGTGGGCGCCGTGCCTATAATactgcccatcaggtataaatgtgcagatactgatcggggttggccggtaaaacccgttaatttgagcgtgggctctggcggttgctcgtagccgtatgaggtgtaagcctgcgg                                 <  2:184867‑M2/148‑115 (MQ=255)                                                                                                                 taCCTGATGGGCAGTGGGCGCCGTGCCTATAATACTGCCCTCATGCGCTTCTGTTCTCCTGACTATCTAAGTCCATTTTCGAAAGGTGGGATCAACGCTTACGTTTACTGCAACA‑ATGACCCCACAAATTACTCAGATCAATCGGGTc                               <  7:257762/148‑1 (MQ=255)                                                                                                                   ccTTATGGGCATTTGGCGCCGTGCCTATAATACTTCCCTCATGCGGTTCTGTTCTCCTGACTATCTAAGTCCATTTTCGAAAGGTGGGATCAACGCTTACGTTTACTGCAACATATGACCCCACAAATTACTCAGATCAATCGGGTcgc                             <  1:236520/149‑1 (MQ=255)                                                                                                                   ccTGATGGGCAGTGGGCGCCGTGCCTATAATactgcccatcaggtataaatgtgcagatactgatcggggttggccggtaaaacccgttaatttgagcgtgggctctggcggttgctcgtagccgtatgaggtgtaagcctgcggtaag                             >  5:137894‑M2/1‑31 (MQ=255)                                                                                                                   ccTGATGGGCAGTGGGATCCTTGCCTATAATACTGCCCTCATGCGCTTCTGTTCTCCTGACTATCTAAGTCCATTTTCGAAATGTGGGATCAACGCTTACGTTTACTGCAACA‑ATGACCCCACAAATTACTCAGATCAATCGGGTcgc                             <  1:206472/148‑1 (MQ=255)                                                                                                                    cTGATGGGCAGTGGGCGCCGTGCCTATAATACTGCCCTCATGCGCTTCTGTTCTCCTGACTATCTAAGTCCATTTTCGAAAGGTGGGATCAACGCTTACGTTTACTGCAACA‑ATGACCCCACAAATTACTCAGATCAATCGGGTCGCGt                           >  2:148132/1‑149 (MQ=255)                                                                                                                      gATGGGCAGTGGGCGCCGTGCCTATAATACTGCCCTCATGCGCTTCTGTTCTCCTGACTATCTAAGTCCATTTTCGAAAGGTGGGATCAACGCTTACGTTTACTGCAACA‑ATGACCCCACAAATTACTCAGATCAATCGGGTCGCGt                           >  8:211725/1‑147 (MQ=255)                                                                                                                          ggCAGTGGGCGCCGTGCCTATAATACTGCCCTCATGCGCTTCTGTTCTCCTGACTATCTAAGTCCATTTTCGAAAGGTGGGATCAACGCTTACGTTTACTGCAACA‑ATGACCCCACAAATTACTCAGATCAATCGGGTCGCGTCAGGac                     >  8:235382/1‑149 (MQ=255)                                                                                                                                   cgcCGTGCCTATAATACTGCCCTCATGCGCTTCTGTTCTCCTGACTATCTAAGTCCATTTTCGAAAGGTGGGATCAACGCTTACGTTTACTGCAACA‑ATGACCCCACAAATTACTCAGATCAATCGGGTCGCGTCa                         <  1:99216/136‑1 (MQ=255)                                                                                                                                   cgcCGTGCCTATAATACTGCCCTCATGCGCTTCTGTTCTCCTGACTATCTAAGTCCATTTTCGAAAGGTGGGATCAACGCTTACGTTTACTGCAACA‑ATGACCCCACAAATTACTCAGATCAATCGGGTCGCGTCa                         >  2:99216/1‑136 (MQ=255)                                                                                                                                     ccGTGCCTATAATACTGCCCTCATGCGCTTCTGTTCTCCTGACTATCTAAGTCCATTTTCGAAAGGTGGGATCAACGCTTACGTTTACTGCAACA‑ATGACCCCACAAATTACTCAGATCAATCGGGTCGCGTCAGGACACCTCACCTAg          <  1:148132/149‑1 (MQ=255)                                                                                                                                        tGCCTATAATACTGCCCTCATGCGCTTCTGTTCTCCTGACTATCTAATTCCATTTTCGAAAGGTGGGATCAACGCTTACGTTTACTGCAACA‑ATGACCCCACAAATTACTCAGATCAATCGGGTCGCGTCATTACACCTCACCTAGGTa       <  6:333074/149‑1 (MQ=255)                                                                                                                                           cTATAATACTGCCCTCATGCGCTTCTGTTCTCCTGACTATCTAAGTCCATTTTCGAAAGGTGGGATCAACGCTTACGTTTACTGCAACA‑ATGACCCCACAAATTACTCAGATCAATCGGGTCGCGTCAGGACACCTCACCTAGGTACCg    >  1:208504/1‑149 (MQ=255)                                                                                                                                              taataCTGCCCTCATGCGCTTCTGTTCTCCTGACTATCTAAGTCCATTTTCGAAAGGTGGGATCAACGCTTACGTTTACTGCAACA‑ATGACCCCACAAATTACTCAGATCAATCGGGTCGCGTCAGGACACCTCACCTAGGTACCGcc  <  7:211725/148‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                  AAACACCTCCTTACCGCAGGCTTACACCTCATACGGCTACGAGCAACCGCCAGAGCCCACGCTCAAATTAACGGGTTTTACCGGCCAACCCCGATCAGTATCTGCACATTTATACCTGATGGGCAGTGGGCGCCGTGCCTATAATACTGCCCTCATGCGCTTCTGTTCTCCTGACTATCTAAGTCCATTTTCGAAAGGTGGGATCAACGCTTACGTTTACTGCAACA‑ATGACCCCACAAATTACTCAGATCAATCGGGTCGCGTCAGGACACCTCACCTAGGTACCGCC  >  NC_002947/3936409‑3936697

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.