New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3941032 =	48 (0.850)	3 (0.060)	3/250	NT	5.9%	coding (168/531 nt)	PP_3475	type II secretion system pseudopilin PulG‑like signal peptide protein
	?	NC_002947	3941110 =	49 (0.900)					coding (90/531 nt)	PP_3475	type II secretion system pseudopilin PulG‑like signal peptide protein

GCTGAATGGTAAGGCCAACGGCGGCTTTACATACCTGGGGGTGCTGCTGCTGATTGCGGTCAGCAGCGTGGCCCTGGCGGCCACCGGCACGATCTGGGCGAGCGCCGCCCAGCGCGACCGCGAACGCCAGTTGCTGTGGGTCGGCAGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3941182‑3941032 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccagGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGCTCTT  >  NC_002947/3941110‑3941224                                                                                                                                                                                                                                                                            GCTGAATGGTAAGGCCAACGGCGGCTTTACATACCTGGGGGTGCTGCTGCTGATTGCGGTCAGCAGCGTGGCCCTGGCGGCCACCGGCACGATCTGGGCGAGCGCCGCCCAGCGCGACCGCGAACGCCAGTTGCTGTGGGTCGGCAGCC                                                                                                                       <  5:45556/149‑1   TGAATGGTAAGGCCAACGGCGGCTTTACATACCTGGGGGTGCTGCTGCTGATTGCGGTCAGCAGCGTGGCCCTGGCGGCCACCGGCACGATCTGGGCGAGCGCCGCCCAGCGCGACCGCGAACGCCAGTTGCTGTGGGTCGGCAGCCAG                                                                                                                     >  2:100628/1‑149   TGAATGGTAAGGCCAACGGCGGCTTTACATACCTGGGGGTGCTGCTGCTGATTGCGGTCAGCAGCGTGGCCCTGGCGGCCACCGGCACGATCTGGGCGAGCGCCGCCCAGCGCGACCGCGAACGCCAGTTGCTGTGGGTCGGCAGCCAG                                                                                                                     >  3:34780/1‑149                                                                         CCTGGCGGCCACCGGCACGATCTGGGCGAGCGCCGCCCAGCGCGACCGCGAACGCCAGTTGCTGTGGGTCGGCAGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCCTACCATT                                                >  2:314723/1‑148                                                                          CTGGCGGCCACCGGCACGATCTGGGCGAGCGCCGCCCAGCGCGACCGCGAACGCCAGTTGCTGTGGGTCGGCAGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTA                                                     >  3:98288/1‑142                                                                          CTGGCGGCCACCGGCACGATCTGGGCGAGCGCCGCCCAGCGCGACCGCGAACGCCAGTTGCTGTGGGTCGGCAGCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTA                                                     <  4:98288/142‑1                                                                                                                                                   GCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGCTCTT  >  5:52100/1‑120                                                                                                                                                   GCCAGGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGCTCTT  <  6:52100/120‑1                                                                                                                                                                                                                                                                            GCTGAATGGTAAGGCCAACGGCGGCTTTACATACCTGGGGGTGCTGCTGCTGATTGCGGTCAGCAGCGTGGCCCTGGCGGCCACCGGCACGATCTGGGCGAGCGCCGCCCAGCGCGACCGCGAACGCCAGTTGCTGTGGGTCGGCAGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3941182‑3941032 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccagGGCCACGCTGCTGACCGCAATCAGCAGCAGCACCCCCAGGTATGTAAAGCCGCCGTTGGCCTTACCATTCAGCGAAGAGGCTGCCATCACGCGCCCTCCCTGTGGCACCGCTCTT  >  NC_002947/3941110‑3941224

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.