New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3956843 =	51 (0.900)	4 (0.070)	4/250	NT	7.7%	coding (3542/5844 nt)	mnxG	manganese‑oxidizing multicopper oxidase
	?	NC_002947	3956902 =	47 (0.860)					coding (3483/5844 nt)	mnxG	manganese‑oxidizing multicopper oxidase

CCATCAACCCGCCCGTGCGCGGCAAGGCGTCGAACCTGCTCGAAGCCATCGTCGAGAAACGCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3956909‑3956843 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACTGGGCATTGGGAATGCCGTCCGGCCCTGCGCCTACGTACACCCCAGCTTCATAGGCATGCTGGAAGTCACTGTACTCCAGGAAGAAC  >  NC_002947/3956902‑3957031                                                                                                                                                                                                       CCATCAACCCGCCCGTGCGCGGCAAGGCGTCGAACCTGCTCGAAGCCATCGTCGAGAAACGCGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACTGGGCATTGGGAATGCCGTCCGGCCCTGCGCCTACGTAC                                                  >  7:296505/1‑149  CATCAACCCGCCCGTGCGCGGCAAGGCGTCGAACCTGCTCGAAGCCATCGTCGAGAAACGCGGCGGGTTGATGACGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACTGGGCATTGGGAATGCCGTCCGGCCCTGCGCCTACGTACA                                                 >  6:76347/1‑149                          GGCGTCGAACCTGCTCGAAGCCATCGTCGAGAAACGCGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACTGGGCATTGGGAATGCCGTCCGGCCCTGCGCCTACGTACACCCCAGCTTCATAGGCATGCTGGA                         <  8:296505/149‑1                                                 TCGTCGAGAAACGCGGCGGGTTGATGACGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACTGGGCATTGGGAATGCCGTCCGGCCCTGCGCCTACGTACACCCCAGCTTCATAGGCATGCTGGAAGTCACTGTACTCCAGGAAGAAC  <  5:76347/149‑1                                                                                                                                                                                                       CCATCAACCCGCCCGTGCGCGGCAAGGCGTCGAACCTGCTCGAAGCCATCGTCGAGAAACGCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3956909‑3956843 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACTGGGCATTGGGAATGCCGTCCGGCCCTGCGCCTACGTACACCCCAGCTTCATAGGCATGCTGGAAGTCACTGTACTCCAGGAAGAAC  >  NC_002947/3956902‑3957031

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.