New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3956843 =	51 (0.900)	4 (0.070)	4/250	NT	7.7%	coding (3542/5844 nt)	mnxG	manganese‑oxidizing multicopper oxidase
	?	NC_002947	3956902 =	47 (0.860)					coding (3483/5844 nt)	mnxG	manganese‑oxidizing multicopper oxidase

GCTTGCCGTCCGGGCCGACCTTGTTCGGGTCATACACGCGCAGGGCCAGCGGCTCGTTGCGGTAGTTGACGACGAACATCCCCGGGTCATCCACCGAGATCGCCTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACTGGGCATTGGGAATGCCGTCCGGCCCTGCGCCTACGTACA  >  NC_002947/3956703‑3956984                                                                                                                                             |                                                                                                                                              gCTTGCCGTCCGGGCCGACCTTGTTCGGGTCATACACGCGCAGGGCCAGCGGCTCGTTGCGGTAGTTGACGACGAACATCCCCGGGTCATCCACCGAGATCGCCTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGt                                                                                                                                       <  7:245383/149‑1 (MQ=255)   ttGCCGTCCGGGCCGACCTTGTTCGGGTCATACACGCGCAGGGCCAGCGGCTCGTTGCGGTAGTTGACGACGCACATCCCCGGGTCATCCACCGAGATCGCCTGCGGGCATGGCCGGCTTGGGCAGCCCGGTGTGAGACCGCCGCGtta                                                                                                                                     >  7:268763/1‑148 (MQ=255)           gttcttcctggagtacagtgacttccagcatgcctatgaagctggggtgtacgtaggcgcagggccggacggcattcccaatgcccagtcgtacccggccactgccgacagcttccgttacgtcatcaacCCGCCGCGTTTCTcgacga                                                                                                                             <  5:76347‑M1/19‑1 (MQ=255)            gggCCGACCTTGTTCGGGTCATACACGCGCAGGGCCAGCGGCTCGTTGCGGTAGTTGACGACGAACATCCCCGGGTCATCCACCGAGATCGCCTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGAt                                                                                                                            <  8:69734/149‑1 (MQ=255)            gggCCGACCTTGTTCGGGTCATACACGCGCAGGGCCAGCGGCTCGTTGCGGTAGTTGACGACGAACATCCCCGGGTCATCCACCGAGATCGCCTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGAt                                                                                                                            <  7:73659/149‑1 (MQ=255)             ggCCGACCTTGTTCGGGTCATACACGCGCAGGGCCAGCGGCTCGTTGCGGTAGTTGACGACGAACATCCCCGGGTCATCCACCGAGATCTCCTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGttt                                                                                                                                     <  8:265187/139‑1 (MQ=255)             ggCCGACCTTGTTCGGGTCATACACGCGCAGGGCCAGCGGCTCGTTGCGGTAGTTGACGACGAACATCCCCGGGTCATCCACCGAGATCGCCTGCGGGCATGGCCGGCTTGGCCAGCCCGGGTTGAGACCGCCGCGttt                                                                                                                                     >  7:265187/1‑139 (MQ=255)                           gggTCATACACGCGCAGGGCCAGCGGCTCGTTGCGGTAGTTGACGACGAACATCCCCGGGTCATCCACCGAGATCGCCTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGtt                                                                                                             >  4:336818/1‑149 (MQ=255)                             gTCATACACGCGCAGGGCCAGCGGCTCGTTGCGGTAGTTGACGACGAACATCCCCGGGTCATCCACCGAGATCGCCTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTc                                                                                                            >  8:123097/1‑148 (MQ=255)                             gTCATACACGCGCAGGGCCAGCGGCTCGTTGCGGTAGTTGACGACGAACATCCCCGGGTCATCCACCGAGATCGCCTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTc                                                                                                            >  5:24198/1‑148 (MQ=255)                                 tACACGCGCAGGGCCAGCGGCTCGTTGCGGTAGTTGACGACGAACATCCCCGGGTCATCCACCGAGATCGCCTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGc                                                                                                       >  3:262210/1‑149 (MQ=255)                                  tccagcatgcctatgaagctggggtgtacgtaggcgcagggccggacggcattcccaatgcccagtcgtacccggccactgccgacagcttccgttacgccatcaacCCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGcc                                                                                                      <  8:296505‑M1/42‑1 (MQ=255)                                   cacGCGCAGGGCCAGCGGCTCGTTGCGGTAGTTGACGACGAACATCCCCGGGTCATCCACCGAGATCGCCTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCt                                                                                                     >  3:295460/1‑149 (MQ=255)                                         cAGGGCCAGCGGCTCGTTGCGGTAGTTGACGACGAACATCCCCGGGTCATCCACCGAGATCGCCTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCcgc                                                                                               <  7:123097/149‑1 (MQ=255)                                                    gCTCGTTGCGGTAGTTGACGACGAACATCCCCGGGTCATCCACCGAGATCGCCTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCAcgggcggg                                                                                    <  4:316862/149‑1 (MQ=255)                                                    gCTCGTTGCGGTAGTTGACGACGAACATCCCCGGGTCATCCACCGAGATCGCCTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCAcgggcggg                                                                                    <  1:193135/149‑1 (MQ=255)                                                      tCGTTGCGGTAGTTGACGACGAACATCCCCGGGTCATCCACCGAGATCGCCTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGtt                                                                                  >  4:178176/1‑149 (MQ=255)                                                         ttGCGGTAGTTGACGACGAACATCCCCGGGTCATCCACCGAGATCGCCTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAgg                                                                                                               >  6:123211/1‑117 (MQ=255)                                                         ttGCGGTAGTTGACGACGAACATCCCCGGGTCATCCACCGAGATCGCCTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAgg                                                                                                               <  5:123211/117‑1 (MQ=255)                                                          tgtacgtaggcgcagggccggacggcattcccaatgcccagtcgtacccggccactgccgacagcttccgttacgtcatcaacCCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATg                                                                              >  6:76347‑M1/84‑149 (MQ=255)                                                           gtacgtaggcgcagggccggacggcattcccaatgcccagtcgtacccggccactgccgacagcttccgttacgccatcaacCCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATgg                                                                             >  7:296505‑M1/83‑149 (MQ=255)                                                              gTAGTTGACGACGAACATCCCCGGGTCATCCACCGAGATCGCCTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGt                                                                          <  3:215660/149‑1 (MQ=255)                                                              gTAGTTGACGACGAACATCCCCGGGTCATCCACCGAGATCGCCTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGt                                                                          <  4:262210/149‑1 (MQ=255)                                                                  ttGACGACGAACATCCCCGGGTCATCCACCGAGATCGCCTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACg                                                                      <  3:336818/149‑1 (MQ=255)                                                                     acgacgAACATCCCCGGGTCATCCACCGAGCTCGCCTGCGGGCATGGCCGGCTGGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGGTGATGGCGTAACGGaa                                                                   <  8:276569/149‑1 (MQ=255)                                                                      cgacgaACATCCCCGGGTCATCCACCGAGATCGCCTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAg                                                                  <  4:295460/149‑1 (MQ=255)                                                                       gacgaACATCCCCGGGTCATCCACCGAGATCGCCTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTc                                                                                                            <  3:332932/106‑1 (MQ=255)                                                                       gacgaACATCCCCGGGTCATCCACCGAGATCGCCTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTc                                                                                                            >  4:332932/1‑106 (MQ=255)                                                                          gaACATCCCCGGGTCATCCACCGAGATCGCCTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGt                                                              >  7:319671/1‑149 (MQ=255)                                                                             cATCCCCGGGTCATCCACCGAGATCGCCTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCgg                                                           >  1:233662/1‑149 (MQ=255)                                                                                   cGGGTCATCCACCGAGATCGCCTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTgg                                                     >  1:82119/1‑149 (MQ=255)                                                                                       tCATCCACCGAGATCGCCTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCgg                                                 <  2:14465/149‑1 (MQ=255)                                                                                            cACCGAGATCGCCTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTAc                                             <  6:24198/148‑1 (MQ=255)                                                                                             aCCGAGATCGCCTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGa                                           >  8:196185/1‑149 (MQ=255)                                                                                             aCCGAGATCGCCTGCGGGCAGGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTTGACGAGGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTTGCCGGGTACGa                                           <  8:268763/149‑1 (MQ=255)                                                                                              ccGAGATCGCCTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGt                                               >  2:100987/1‑144 (MQ=255)                                                                                              ccGAGATCGCCTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGt                                               <  1:100987/144‑1 (MQ=255)                                                                                               cGAGATCGCCTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACt                                         >  5:336845/1‑149 (MQ=255)                                                                                                     cGCCTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACTGGGCAt                                   >  3:290248/1‑149 (MQ=255)                                                                                                       ccTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGCCTGGGCATTg                                 >  4:271491/1‑149 (MQ=255)                                                                                                       ccTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACTGGGCATTg                                 <  2:82119/149‑1 (MQ=255)                                                                                                        cTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGt                                               <  3:192226/134‑1 (MQ=255)                                                                                                        cTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGt                                               >  4:192226/1‑134 (MQ=255)                                                                                                        cTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACTGGGCATTgg                                <  2:233662/149‑1 (MQ=255)                                                                                                        cTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACTGGGCATTgg                                >  6:83969/1‑149 (MQ=255)                                                                                                                  ggCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTg                                                      >  3:211409/1‑117 (MQ=255)                                                                                                                  ggCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTg                                                      <  4:211409/117‑1 (MQ=255)                                                                                                                   gCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACTGGGCATTGGGAATGCCGTc                      <  8:319671/148‑1 (MQ=255)                                                                                                                    ccGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACTGGGCATTGGGAATGCCGTCCg                    <  6:336845/149‑1 (MQ=255)                                                                                                                    ccGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACTGGGCATTGGGAATGCCGTCCg                    <  4:290248/149‑1 (MQ=255)                                                                                                                     cGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACTGGGCATTGGGAATGCCGTCCgg                   >  3:166109/1‑149 (MQ=255)                                                                                                                         ttGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACTGGGCATTGGGAATGCCGTCCGGCCCt               >  8:192993/1‑149 (MQ=255)                                                                                                                              cAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACTGGGCATTGGGAATGCCGTCCGGCCCTGCGcc          <  4:166109/149‑1 (MQ=255)                                                                                                                                 cccGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATg                                                                              <  2:29024/78‑1 (MQ=255)                                                                                                                                      gTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACTGGGCATTGGGAATGCCGTCCGGCCCTGCGCCTACGTaca  >  1:253136/1‑149 (MQ=255)                                                                                                                                             |                                                                                                                                              GCTTGCCGTCCGGGCCGACCTTGTTCGGGTCATACACGCGCAGGGCCAGCGGCTCGTTGCGGTAGTTGACGACGAACATCCCCGGGTCATCCACCGAGATCGCCTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACTGGGCATTGGGAATGCCGTCCGGCCCTGCGCCTACGTACA  >  NC_002947/3956703‑3956984

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.