New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3956843 =	51 (0.900)	4 (0.070)	4/250	NT	7.7%	coding (3542/5844 nt)	mnxG	manganese‑oxidizing multicopper oxidase
	?	NC_002947	3956902 =	47 (0.860)					coding (3483/5844 nt)	mnxG	manganese‑oxidizing multicopper oxidase

GCTCGTTGCGGTAGTTGACGACGAACATCCCCGGGTCATCCACCGAGATCGCCTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACTGGGCATTGGGAATGCCGTCCGGCCCTGCGCCTACGTACACCCCAGCTTCATAGGCATGCTGGAAGTCACTGTACTCCAGGAAGAACTCGCGGTAGCTGTCGTTCT  >  NC_002947/3956754‑3957050                                                                                                                                                     |                                                                                                                                                     gCTCGTTGCGGTAGTTGACGACGAACATCCCCGGGTCATCCACCGAGATCGCCTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCAcgggcggg                                                                                                                                                      <  1:193135/149‑1 (MQ=255) gCTCGTTGCGGTAGTTGACGACGAACATCCCCGGGTCATCCACCGAGATCGCCTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCAcgggcggg                                                                                                                                                      <  4:316862/149‑1 (MQ=255)   tCGTTGCGGTAGTTGACGACGAACATCCCCGGGTCATCCACCGAGATCGCCTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGtt                                                                                                                                                    >  4:178176/1‑149 (MQ=255)       tgtacgtaggcgcagggccggacggcattcccaatgcccagtcgtacccggccactgccgacagcttccgttacgtcatcaacCCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATg                                                                                                                                                >  6:76347‑M1/84‑149 (MQ=255)        gtacgtaggcgcagggccggacggcattcccaatgcccagtcgtacccggccactgccgacagcttccgttacgccatcaacCCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATgg                                                                                                                                               >  7:296505‑M1/83‑149 (MQ=255)           gTAGTTGACGACGAACATCCCCGGGTCATCCACCGAGATCGCCTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGt                                                                                                                                            <  3:215660/149‑1 (MQ=255)           gTAGTTGACGACGAACATCCCCGGGTCATCCACCGAGATCGCCTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGt                                                                                                                                            <  4:262210/149‑1 (MQ=255)               ttGACGACGAACATCCCCGGGTCATCCACCGAGATCGCCTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACg                                                                                                                                        <  3:336818/149‑1 (MQ=255)                  acgacgAACATCCCCGGGTCATCCACCGAGCTCGCCTGCGGGCATGGCCGGCTGGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGGTGATGGCGTAACGGaa                                                                                                                                     <  8:276569/149‑1 (MQ=255)                   cgacgaACATCCCCGGGTCATCCACCGAGATCGCCTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAg                                                                                                                                    <  4:295460/149‑1 (MQ=255)                       gaACATCCCCGGGTCATCCACCGAGATCGCCTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGt                                                                                                                                >  7:319671/1‑149 (MQ=255)                          cATCCCCGGGTCATCCACCGAGATCGCCTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCgg                                                                                                                             >  1:233662/1‑149 (MQ=255)                                cGGGTCATCCACCGAGATCGCCTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTgg                                                                                                                       >  1:82119/1‑149 (MQ=255)                                    tCATCCACCGAGATCGCCTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCgg                                                                                                                   <  2:14465/149‑1 (MQ=255)                                         cACCGAGATCGCCTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTAc                                                                                                               <  6:24198/148‑1 (MQ=255)                                          aCCGAGATCGCCTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGa                                                                                                             >  8:196185/1‑149 (MQ=255)                                          aCCGAGATCGCCTGCGGGCAGGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTTGACGAGGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTTGCCGGGTACGa                                                                                                             <  8:268763/149‑1 (MQ=255)                                           ccGAGATCGCCTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGt                                                                                                                 >  2:100987/1‑144 (MQ=255)                                           ccGAGATCGCCTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGt                                                                                                                 <  1:100987/144‑1 (MQ=255)                                            cGAGATCGCCTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACt                                                                                                           >  5:336845/1‑149 (MQ=255)                                                  cGCCTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACTGGGCAt                                                                                                     >  3:290248/1‑149 (MQ=255)                                                    ccTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGCCTGGGCATTg                                                                                                   >  4:271491/1‑149 (MQ=255)                                                    ccTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACTGGGCATTg                                                                                                   <  2:82119/149‑1 (MQ=255)                                                     cTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGt                                                                                                                 >  4:192226/1‑134 (MQ=255)                                                     cTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGt                                                                                                                 <  3:192226/134‑1 (MQ=255)                                                     cTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACTGGGCATTgg                                                                                                  >  6:83969/1‑149 (MQ=255)                                                     cTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACTGGGCATTgg                                                                                                  <  2:233662/149‑1 (MQ=255)                                                               ggCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTg                                                                                                                        <  4:211409/117‑1 (MQ=255)                                                               ggCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTg                                                                                                                        >  3:211409/1‑117 (MQ=255)                                                                gCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACTGGGCATTGGGAATGCCGTc                                                                                        <  8:319671/148‑1 (MQ=255)                                                                 ccGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACTGGGCATTGGGAATGCCGTCCg                                                                                      <  4:290248/149‑1 (MQ=255)                                                                 ccGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACTGGGCATTGGGAATGCCGTCCg                                                                                      <  6:336845/149‑1 (MQ=255)                                                                  cGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACTGGGCATTGGGAATGCCGTCCgg                                                                                     >  3:166109/1‑149 (MQ=255)                                                                      ttGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACTGGGCATTGGGAATGCCGTCCGGCCCt                                                                                 >  8:192993/1‑149 (MQ=255)                                                                           cAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACTGGGCATTGGGAATGCCGTCCGGCCCTGCGcc                                                                            <  4:166109/149‑1 (MQ=255)                                                                              cccGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATg                                                                                                                                                <  2:29024/78‑1 (MQ=255)                                                                                  ccatcaacccgcccgtgcgcggcaaggcgtcgaacctgctcgaagccatcgtcgagaaacgcggcggGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACTGGGCATTGGGAATGCCGTCCGGCCCTGCGCCTACGTac                                                                     >  7:296505‑M2/68‑149 (MQ=255)                                                                                   gTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACTGGGCATTGGGAATGCCGTCCGGCCCTGCGCCTACGTaca                                                                    >  1:253136/1‑149 (MQ=255)                                                                                   catcaacccgcccgtgcgcggcaaggcgtcgaacctgctcgaagccatcgtcgagaaacgcggcggGTTGATGACGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACTGGGCATTGGGAATGCCGTCCGGCCCTGCGCCTACGTaca                                                                    >  6:76347‑M2/67‑149 (MQ=255)                                                                                                cgTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACTGGGCATTGGGAATGCCGTCCGGCCCTGCGCCTACGTACACCCCAGCTTCATa                                                       <  7:192993/149‑1 (MQ=255)                                                                                                 gTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACTGGGCATTGGGAATGCCGTCCGGCCCTGCGCCTACGTACACCCCAGCTTCATAg                                                      <  3:312381/149‑1 (MQ=255)                                                                                                    tctcGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACTGGGCATTGGGAATGCCGTCCGGCCCTGCGCCTACGTACACCCCAGCTTCATAGGCa                                                   >  6:141869/1‑149 (MQ=255)                                                                                                      tcGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACTGGGCATTGGGAATGCCGTCCGGCCCTGCGCCTACg                                                                        >  4:233194/1‑126 (MQ=255)                                                                                                      tcGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACTGGGCATTGGGAATGCCGTCCGGCCCTGCGCCTACg                                                                        <  3:233194/126‑1 (MQ=255)                                                                                                        gacgaTGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACTGGGCATTGGGAATGCCGTCCGGCCCTGCGCCTACGTACACCCCAGCTTCATAGGCATGCt                                               <  7:196185/149‑1 (MQ=255)                                                                                                         acgaTGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACTGGGCATTGGGAATGCCGTCCGGCCCTGCGCCTACGTACACCCCAGCTTCATAg                                                      >  4:124718/1‑141 (MQ=255)                                                                                                         acgaTGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACTGGGCATTGGGAATGCCGTCCGGCCCTGCGCCTACGTACACCCCAGCTTCATAg                                                      <  3:124718/141‑1 (MQ=255)                                                                                                           ggcgtcgaacctgctcgaagccatcgtcgagaaacgcggcggGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACTGGGCATTGGGAATGCCGTCCGGCCCTGCGCCTACGTACACCCCAGCTTCATAGGCATGCTGGa                                            <  8:296505‑M2/107‑1 (MQ=255)                                                                                                            aTGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACTGGGCATTGGGAATGCCGTCCGGCCCTGCGCCTACGTACACCCCAGCTTCATAGGCATGCTGGaa                                           <  3:178176/149‑1 (MQ=255)                                                                                                               gCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACTGGGCATTGGGAATGCCGTCCGGCCCTGCGCCTACGTACACCCCAGCTTc                                                          >  7:153229/1‑131 (MQ=255)                                                                                                               gCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACTGGGCATTGGGAATGCCGTCCGGCCCTGCGCCTACGTACACCCCAGCTTc                                                          <  8:153229/131‑1 (MQ=255)                                                                                                                 ttCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACTGGGCATTGGGAATGCCGTCCGGCCCTGCGCCTACGTACACCCCAGCTTCATAGGCATGCTGGAAGTCAc                                      >  3:220587/1‑149 (MQ=255)                                                                                                                            tCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACTGGGCATTGGGAATGCCGTCCGGCCCTGCGCCTACGTACACCCCAGCTTCATAgg                                                     >  8:5878/1‑123 (MQ=255)                                                                                                                            tCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACTGGGCATTGGGAATGCCGTCCGGCCCTGCGCCTACGTACACCCCAGCTTCATAgg                                                     <  7:5878/123‑1 (MQ=255)                                                                                                                                  tcgtcgagaaacgcggcggGTTGATGACGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACTGGGCATTGGGAATGCCGTCCGGCCCTGCGCCTACGTACACCCCAGCTTCATAGGCATGCTGGAAGTCACTGTACTCCAGGAAGAAc                     <  5:76347‑M2/130‑1 (MQ=255)                                                                                                                                   cTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACTGGGCATTGGGAATGCCGTCCGGCCCTGCGCCTACGTACACCCCAGCTTCATAGGCATGCTGGAAGTCACTGTACTCCAGGAAGAACt                    >  8:180470/1‑149 (MQ=255)                                                                                                                                             aCGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACTGGGCATTGGGAATGCCGTCCGGCCCTGCGCCTACGTACACCCCAGCTTCATAGGCATGCTGGAAGTCACTGTACTCCAGGAAGAACTCGCGGTAGCt          <  2:253136/149‑1 (MQ=255)                                                                                                                                                     gTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACTGGGCATTGGGAATGCCGTCCGGCCCTGCGCCTACGTACACCCCAGCTTCATAGGCATGCTGGAAGTCACTGTACTCCAGGAAGAACTCGCGGTAGCTGTCGTTCt  >  6:184723/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                     GCTCGTTGCGGTAGTTGACGACGAACATCCCCGGGTCATCCACCGAGATCGCCTGCGGGCATGGCCGGCTTGGGCAGCCCGGGTTGAGACCGCCGCGTTTCTCGACGATGGCTTCGAGCAGGTTCGACGCCTTGCCGCGCACGGGCGGGTTGATGGCGTAACGGAAGCTGTCGGCAGTGGCCGGGTACGACTGGGCATTGGGAATGCCGTCCGGCCCTGCGCCTACGTACACCCCAGCTTCATAGGCATGCTGGAAGTCACTGTACTCCAGGAAGAACTCGCGGTAGCTGTCGTTCT  >  NC_002947/3956754‑3957050

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.