| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4020885 = | 49 (0.860) | 3 (0.060) | 3/250 | NT | 6.4% | coding (1596/2067 nt) | PP_3546 | two‑component system sensor histidine kinase/response regulator |
| ? | NC_002947 | 4020924 = | 40 (0.730) | coding (1635/2067 nt) | PP_3546 | two‑component system sensor histidine kinase/response regulator | |||||
GGCGCAAGGCCGTCTGGTCTTCAACCAACAGAATGCGTTTTGCAGCCTCGCTGCTTCTTTGCAAGAGCGTGCGCGGAGGTTTGCTGATTGGCGCCTGGGCTTGCTCGTGGTGGCGGGGTAACAGCAGCTCGATGCGGGTACCCTCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4021033‑4020885‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccaCCACGAGCAAGCCCAGGCGCCAATCAGCAAACCTCCGCGCACGCTCTTGCAAAGAAGCAGCGAGGCTGCAAAACGCATTCTGTTGGTTGAAGACCAGACGGCCTTGCGCCTGGTGATTGGCGAAGTGTTGGAAGAGCTGGGCTATCGG > NC_002947/4020924‑4021071 GGCGCAAGGCCGTCTGGTCTTCAACCAACAGAATGCGTTTTGCAGCCTCGCTGCTTCTTTGCAAGAGCGTGCGCGGAGGTTTGCTGATTGGCGCCTGGGCTTGCTCGTGGTGGCGGGGTAACAGCAGCTCGATGCGGTAACACTCGCCA > 4:197214/1‑149GGCGCAAGGCCGTCTGGTCTTCAACCAACAGAATGCGTTTTGCAGCCTCGCTGCTTCTTTGCAAGAGCGTGCGCGGAGGTTTGCTGATTGGCGCCTGGGCTTGCTCGTGGTGGCGGGGTAACAGCAGCTCGATGCGGGTACCCTCGCCA < 3:112581/149‑1 GGTGGCGGGGTAACAGCAGCTCGATGCGGGTACCCTCGCCACCACGAGCAAGCCCAGGCGCCAATCAGCAAACCTCCGCGCACGCTCTTGCAAAGAAGCAGCGAGGCTGCAAAAC > 7:213480/1‑115 GGTGGCGGGGTAACAGCAGCTCGATGCGGGTACCCTCGCCACCACGAGCAAGCCCAGGCGCCAATCAGCAAACCTCCGCGCACGCTCTTGCAAAGAAGCAGCGAGGCTGCAAAAC < 8:213480/115‑1 GGGGTAACAGCAGCTCGATGCGGGTACCCTCGCCACCACGAGCAAGCCCAGGCGCCAATCAGCAAACCTCCGCGCACGCTCTTGCAAAGAAGCAGCGAGGCTGCAAAACGCATTCTGTTGGTTGAAGACCAGACGGCCTTGCGCCTGGT > 1:135114/1‑149 CCACCACGAGCAAGCCCAGGCGCCAATCAGCAAACCTCCGCGCACGCTCTTGCAAAGAAGCAGCGAGGCTGCAAAACGCATTCTGTTGGTTGAAGACCAGACGGCCTTGCGCCTGGTGATTGGCGAAGTGTTGGAAGAGCTGGGCTATC < 1:97298/149‑1 CCACCACGAGCAAGCCCAGGCGCCAATCAGCAAACCTCCGCGCACGCTCTTGCAAAGAAGCAGCGAGGCTGCAAAACGCATTCTGTTGGTTGAAGACCAGACGGCCTTGCGCCTGGTGATTGGCGAAGTGTTGGAAGAGCTGGGCTATC < 4:162702/149‑1 CACCACGAGCAAGCCCAGGCGCCAATCAGCAAACCTCCGCGCACGCTCTTGCAAAGAAGCAGCGAGGCTGCAAAACGCATTCTGTTGGTTGAAGACCAGACGGCCTTGCGCCTGGTGATTGGCGAAGTGTTGGAAGAGCTGGGCTATCG > 7:138934/1‑149 ACCACGAGCAAGCCCAGGCGCCAATCAGCAAACCTCCGCGCACGCTCTTGCAAAGAAGCAGCGAGGCTGCAAAACGCATTCTGTTGGTTGAAGACCAGACGGCCTTGCGCCTGGTGATTGGCGAAGTGTTGGAAGAGCTGGGCTATCGG < 5:188422/149‑1 ACCACGAGCAAGCCCAGGCGCCAATCAGCAAACCTCCGCGCACGCTCTTGCAAAGAAGCAGCGAGGCTGCAAAACGCATTCTGTTGGTTGAAGACCAGACGGCCTTGCGCCTGGTGATTGGCGAAGTGTTGGAAGAGCTGGG < 2:123287/142‑1 ACCACGAGCAAGCCCAGGCGCCAATCAGCAAACCTCCGCGCACGCTCTTGCAAAGAAGCAGCGAGGCTGCAAAACGCATTCTGTTGGTTGAAGACCAGACGGCCTTGCGCCTGGTGATTGGCGAAGTGTTCGAAGAGCTGGG > 1:123287/1‑142 GGCGCAAGGCCGTCTGGTCTTCAACCAACAGAATGCGTTTTGCAGCCTCGCTGCTTCTTTGCAAGAGCGTGCGCGGAGGTTTGCTGATTGGCGCCTGGGCTTGCTCGTGGTGGCGGGGTAACAGCAGCTCGATGCGGGTACCCTCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4021033‑4020885‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccaCCACGAGCAAGCCCAGGCGCCAATCAGCAAACCTCCGCGCACGCTCTTGCAAAGAAGCAGCGAGGCTGCAAAACGCATTCTGTTGGTTGAAGACCAGACGGCCTTGCGCCTGGTGATTGGCGAAGTGTTGGAAGAGCTGGGCTATCGG > NC_002947/4020924‑4021071 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |