New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4146453 =	64 (1.130)	3 (0.060)	3/244	NT	5.3%	coding (536/2184 nt)	PP_3651	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	4146516 =	47 (0.880)					coding (599/2184 nt)	PP_3651	two‑component system sensor histidine kinase/response regulator

CCGAAGTCATGCAGGTGATAGTGGCCCACCAGGCGTGGTGAACCGGGGGTCACTGCATCGCCGCAAATGGTGAAACCGTCCTCGTCGGGGTCCATCACCGCATAGGCGCAGCTGGACAGGCCAAGGTGCTCGACCAGCATGCGGGTGGTGATGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4146606‑4146453 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgatggACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCACTATCACCTGCATGACTTCGGCCGCCTGGCTGTCAGCCGCCTGCGCAGCGGCCTGGCCCTGGTGATCAAT  >  NC_002947/4146516‑4146655                                                                                                                                                                                                                                                                                                        CCGAAGTCATGCAGGTGATAGTGGCCCACCAGGCGTGGTGAACCGGGGGTCACTGCATCGCCGCAAATGGTGAAACCGTCCTCGTCGGGGTCCATCACCGCATAGGCGCAGCTGGACAGGCCAAGGTGCTCGACCAGCATGCGGGTGGT                                                                                                                                                   >  7:172623/1‑149   GAAGTCATGCAGGTGATAGTGGCCCACCAGGCGTGGTGAACCGGGGGTCACTGCATCGCCGCAAATGGTGAAACCGTCCTCGTCGGGGTCCATCACCGCATAGGCGCAGCTGGACAGGCCAAGGTGCTCGACCAGCATGCGGGTGGTGA                                                                                                                                                 >  5:158055/1‑149   GAAGTCATGCAGGTGATAGTGGCCCACCAGGCGTGGTGAACCGGGGGTCACTGCATCGCCGCAAATGGTGAAACCGTCCTCGTCGGGGTCCATCACCGCATAGGCGCAGCTGGACAGGCCAAGGTGCTCGACCAGCATGCGGGTGGTGA                                                                                                                                                 >  8:335811/1‑149     AGTCATGCAGGTGATAGTGGCCCACCAGGCGTGGTGAACCGGGGGTCACTGCATCGCCGCAAATGGTGAAACCGTCCTCGTCGGGGTCCATCACCGCATAGGCGCAGCTGGACAGGCCAAGGTGCTCGACCAGCATGCGGGTGGTGATG                                                                                                                                               >  4:179177/1‑149                                                                      GTGAAACCGTCCTCGTCGGGGTCCATCACCGCATAGGCGCAGCTGGACAGGCCAAGGTGCTCGACCAGCATGCGGGTG                                                                                                                                                     <  7:140648/78‑1                                                                      GTGAAACCGTCCTCGTCGGGGTCCATCACCGCATAGGCGCAGCTGGACAGGCCAAGGTGCTCGACCAGCATGCGGGTG                                                                                                                                                     >  8:140648/1‑78                                                                                           TCCATCACCGCATAGGCGCAGCTGGACAGGCCAAGGTGCTCGACCAGCATGCGGGTGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCACTATCACCTGCATG                                                          >  8:223646/1‑148                                                                                             CATCACCGCATAGGCGCAGCTGGACAGGCCAAGGTGCTCGACCAGCATGCGGGTGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCACTATCACCTGCATGACT                                                       >  1:11059/1‑149                                                                                                 ACCGCATAGGCGCAGCTGGACAGGCCAAGGTGCTCGACCAGCATGCGGGTGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCACTATCACCTGCATGACTTCG                                                    <  2:11059/148‑1                                                                                                                                                   GGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTCGGCCACTATCACCTGCATGACTTCGGCCGCCTGGCTCTCAGCCGCCTGCGCAGCCGCCTGGCCCTGGTGATCAAT  >  4:342056/1‑148                                                                                                                                                                                                                                                                                                        CCGAAGTCATGCAGGTGATAGTGGCCCACCAGGCGTGGTGAACCGGGGGTCACTGCATCGCCGCAAATGGTGAAACCGTCCTCGTCGGGGTCCATCACCGCATAGGCGCAGCTGGACAGGCCAAGGTGCTCGACCAGCATGCGGGTGGTGATGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4146606‑4146453 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgatggACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCACTATCACCTGCATGACTTCGGCCGCCTGGCTGTCAGCCGCCTGCGCAGCGGCCTGGCCCTGGTGATCAAT  >  NC_002947/4146516‑4146655

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.