New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 4146453 =64 (1.130)3 (0.060) 3/244 NT 5.3% coding (536/2184 nt) PP_3651 two‑component system sensor histidine kinase/response regulator
?NC_002947 4146516 = 47 (0.880)coding (599/2184 nt) PP_3651 two‑component system sensor histidine kinase/response regulator

AGCGTGGTCACCAACCAGCGCCTGAACTTTCTCGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCACTATCACCTGCATGACTTCGGCCGCCTGGCTGTCAGCCGCCTGCGCAGCGGCCTGGCCCTGGTGATCAAT  >  NC_002947/4146368‑4146655
                                                                                                                                                    |                                                                                                                                            
aGCGTGGTCACCAACCAGCGCCTGAACTTTCTCGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGa                                                                                                                                              >  7:335811/1‑149 (MQ=255)
 catgcaggtgatagtggcccaccaggcgtggtgaaccgggggtcactgcatcgccgcaaatggtgaaaccgtcctcgtcggggtCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGa                                                                                                                                              >  8:223646‑M1/85‑148 (MQ=255)
   gTGGTCACCAACCAGCGCCTGAACTTTCTCGATCCCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGAccc                                                                                                                                           <  6:303771/149‑1 (MQ=255)
         accaaccaGCGCCTGAACTTTCTCGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCcgacga                                                                                                                                     <  4:124528/149‑1 (MQ=255)
           caaccaGCGCCTGAACTTTCTCGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAgg                                                                                                                                   <  2:361278/149‑1 (MQ=255)
                     cTGAACTTTCTCGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCAc                                                                                                                         >  7:292208/1‑149 (MQ=255)
                      tGAACTTTCTCGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCAc                                                                                                                         >  1:238056/1‑148 (MQ=255)
                         aCTTTCTCGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCAtt                                                                                                                     <  5:360222/149‑1 (MQ=255)
                           tttCTCGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTCTCCAGCTCCGCCTATGCGGTTATGGACCCCGACGAGCACGGTTTAACCATTTg                                                                                                                   >  8:275845/1‑149 (MQ=255)
                             tctcGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTg                                                                                                                   <  7:275845/147‑1 (MQ=255)
                             tctcGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTAAGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTgcg                                                                                                                 >  5:294094/1‑149 (MQ=255)
                                 gATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTgcggc                                                                                                               <  2:40334/147‑1 (MQ=255)
                                 gATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGa                                                                                                             <  5:181113/149‑1 (MQ=255)
                                  aTACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGAt                                                                                                            >  5:87469/1‑149 (MQ=255)
                                   tACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATg                                                                                                           <  4:55145/149‑1 (MQ=255)
                                     cccTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCa                                                                                                         <  8:292208/149‑1 (MQ=255)
                                      ccTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGAGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAg                                                                                                        >  3:67482/1‑149 (MQ=255)
                                          gggCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGAc                                                                                                    <  4:67482/149‑1 (MQ=255)
                                              gAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGAccccc                                                                                                >  8:172623/1‑149 (MQ=255)
                                                gCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCgg                                                                                              >  8:79665/1‑149 (MQ=255)
                                                       ccGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTcacca                                                                                       >  4:20481/1‑149 (MQ=255)
                                                       ccGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTcacca                                                                                       >  6:158055/1‑149 (MQ=255)
                                                        cGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTca                                                                                          >  3:33842/1‑145 (MQ=255)
                                                        cGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTca                                                                                          <  4:33842/145‑1 (MQ=255)
                                                               accgtccCGGACCAGATACTTTCCATCACCACCCGCAAGCTGGTCGTGCACATTGGCCTGTCCTGCTGCGCCTATGCGGTGCTGGACGCCGACGAGGAGGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCtggt                                                                              <  6:309624/149‑1 (MQ=255)
                                                                 cgaccCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCtggtgg                                                                            <  2:238056/149‑1 (MQ=255)
                                                                     ccGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGtt                                                                                            >  4:129928/1‑130 (MQ=255)
                                                                     ccGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGtt                                                                                            <  3:129928/130‑1 (MQ=255)
                                                                       ggACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCAc                                                                       >  3:179177/1‑148 (MQ=255)
                                                                        gACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCACTa                                                                     >  5:277726/1‑149 (MQ=255)
                                                                        gACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATCCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCACTa                                                                     <  5:151947/149‑1 (MQ=255)
                                                                             gATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCACTATCAcc                                                                <  3:20481/149‑1 (MQ=255)
                                                                               tCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGt                                                                                                       <  8:16908/109‑1 (MQ=255)
                                                                               tCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGt                                                                                                       >  7:16908/1‑109 (MQ=255)
                                                                                 aTGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCACTATCACCTGc                                                             <  6:277726/148‑1 (MQ=255)
                                                                                  tGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCa                                                                        >  8:340970/1‑136 (MQ=255)
                                                                                  tGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCa                                                                        <  7:340970/136‑1 (MQ=255)
                                                                                  tGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCACTATCACCTGCAt                                                           <  3:122537/149‑1 (MQ=255)
                                                                                    tccatcaccgcataggcgcagctggacaggccaaggtgctcgaccagcatgcgggtggtgatggACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCACTATCACCTGCATg                                                          >  8:223646‑M2/65‑148 (MQ=255)
                                                                                      catcaccgcataggcgcagctggacaggccaaggtgctcgaccagcatgcgggtggtgatggACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCACTATCACCTGCATGACt                                                       >  1:11059‑M2/63‑149 (MQ=255)
                                                                                      CATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCACTATCACCTGCATGACt                                                       >  4:179177‑M1/1‑149 (MQ=255)
                                                                                        TCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCACTATCACCTGCATGACTTc                                                     >  5:158055‑M1/1‑149 (MQ=255)
                                                                                        TCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCACTATCACCTGCATGACTTc                                                     >  8:335811‑M1/1‑149 (MQ=255)
                                                                                          accgcataggcgcagctggacaggccaaggtgctcgaccagcatgcgggtggtgatggACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCACTATCACCTGCATGACTTCg                                                    <  2:11059‑M2/90‑1 (MQ=255)
                                                                                          ACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCACTATCACCTGCATGACTTCgg                                                   >  7:172623‑M1/1‑149 (MQ=255)
                                                                                            CACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCAc                                                                                                                         <  7:140648‑M1/78‑1 (MQ=255)
                                                                                            CACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCAc                                                                                                                         >  8:140648‑M1/1‑78 (MQ=255)
                                                                                              cccGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCACTATCACCTGCATGACTTCGgccgc                                               <  1:140417/149‑1 (MQ=255)
                                                                                                      cTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTCAGAGGGCCACTATCACCTGCATGACTTCGGCCGCCTGGCTg                                        >  1:302209/1‑149 (MQ=255)
                                                                                                            gAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCACTATCACCTGCATGACTTCGGCCGCCTGGCTGTCAgccg                                 >  3:211927/1‑149 (MQ=255)
                                                                                                             aGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCACTATCACCTGCATGACTTCGGCCGCCTGGCTGTCAgccgc                                <  5:28491/149‑1 (MQ=255)
                                                                                                              gCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGAc                                                                                                    <  3:123087/81‑1 (MQ=255)
                                                                                                              gCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGAc                                                                                                    >  4:123087/1‑81 (MQ=255)
                                                                                                                 ccTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGAAGGTTTAACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCGACTATCAGCTGCATGACTTCGGCCGCCTGGCTGTCAGCCGACTgc                            >  7:247825/1‑149 (MQ=255)
                                                                                                                  cTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCa                                                                        >  4:200365/1‑104 (MQ=255)
                                                                                                                  cTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCa                                                                        <  3:200365/104‑1 (MQ=255)
                                                                                                                       ccTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCACTATCACCTGCATGACTTc                                                     <  4:307751/118‑1 (MQ=255)
                                                                                                                       ccTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCACTATCACCTGCATGACTTc                                                     >  3:307751/1‑118 (MQ=255)
                                                                                                                         tGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCACTATCACCTGCATGACTTCGGCCGCCTGGCTGTCAGCCGCCTGCGCAGCGGc                    >  2:161138/1‑149 (MQ=255)
                                                                                                                                           cGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCACTATCACCTGCATGACTTCGGCCGCCTGGCTGTCAGCCGCCTGCGCAGCGGCCTGGCCCTGGTGATCAAt  <  1:161138/149‑1 (MQ=255)
                                                                                                                                            ggtgatggACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTCGGCCACTATCACCTGCATGACTTCGGCCGCCTGGCTCTCAGCCGCCTGCGCAGCCGCCTGGCCCTGGTGATCAAt  >  4:342056‑M2/9‑148 (MQ=255)
                                                                                                                                                    |                                                                                                                                            
AGCGTGGTCACCAACCAGCGCCTGAACTTTCTCGATACCCTCGGGCGAGCCGTGACCGAGGCGACCGACCCGGACCAGATCATGGCCATCACCACCCGCATGCTGGTCGAGCACCTTGGCCTGTCCAGCTGCGCCTATGCGGTGATGGACCCCGACGAGGACGGTTTCACCATTTGCGGCGATGCAGTGACCCCCGGTTCACCACGCCTGGTGGGCCACTATCACCTGCATGACTTCGGCCGCCTGGCTGTCAGCCGCCTGCGCAGCGGCCTGGCCCTGGTGATCAAT  >  NC_002947/4146368‑4146655

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.